Wall clock time and date at job start Mon Mar 30 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99782 * 2 1 4 4 H 1.08998 * 109.47283 * 33.89557 * 3 2 1 5 5 C 1.50701 * 109.46770 * 153.88932 * 3 2 1 6 6 H 1.08002 * 119.99755 * 119.72830 * 5 3 2 7 7 C 1.37882 * 120.00348 * 300.00057 * 5 3 2 8 8 N 1.31513 * 120.00053 * 179.72693 * 7 5 3 9 9 Si 1.86801 * 119.99596 * 359.72619 * 7 5 3 10 10 H 1.48498 * 109.47191 * 89.99928 * 9 7 5 11 11 H 1.48500 * 109.47016 * 209.99840 * 9 7 5 12 12 H 1.48502 * 109.47406 * 329.99549 * 9 7 5 13 13 C 1.50698 * 109.47300 * 273.89139 * 3 2 1 14 14 C 1.38228 * 119.99857 * 314.50680 * 13 3 2 15 15 C 1.38240 * 119.99842 * 179.79140 * 14 13 3 16 16 C 1.38230 * 120.00032 * 0.43845 * 15 14 13 17 17 C 1.50700 * 120.00407 * 179.83538 * 16 15 14 18 18 C 1.52999 * 109.47294 * 239.98058 * 17 16 15 19 19 C 1.53001 * 109.46918 * 359.97438 * 17 16 15 20 20 C 1.52996 * 109.47045 * 119.97551 * 17 16 15 21 21 C 1.38241 * 119.99854 * 359.81737 * 16 15 14 22 22 C 1.38232 * 120.00198 * 359.97438 * 21 16 15 23 23 H 1.08995 * 109.47258 * 305.00295 * 1 2 3 24 24 H 1.08998 * 109.46977 * 65.00090 * 1 2 3 25 25 H 1.08995 * 109.47106 * 184.99937 * 1 2 3 26 26 H 1.00901 * 110.99747 * 123.95581 * 2 1 3 27 27 H 0.96998 * 119.99813 * 179.97438 * 8 7 5 28 28 H 1.07998 * 120.00189 * 359.97438 * 14 13 3 29 29 H 1.08001 * 119.99669 * 180.27577 * 15 14 13 30 30 H 1.08999 * 109.46857 * 60.00052 * 18 17 16 31 31 H 1.09004 * 109.46646 * 179.97438 * 18 17 16 32 32 H 1.08993 * 109.47206 * 299.99857 * 18 17 16 33 33 H 1.08997 * 109.47215 * 59.99275 * 19 17 16 34 34 H 1.08994 * 109.47614 * 180.02562 * 19 17 16 35 35 H 1.09011 * 109.46879 * 300.00086 * 19 17 16 36 36 H 1.09003 * 109.46878 * 60.00718 * 20 17 16 37 37 H 1.09004 * 109.47261 * 180.02562 * 20 17 16 38 38 H 1.09003 * 109.47673 * 300.00331 * 20 17 16 39 39 H 1.08003 * 119.99637 * 179.97438 * 21 16 15 40 40 H 1.07997 * 120.00099 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3293 2.0163 0.5731 5 6 3.3666 1.3832 0.6253 6 1 4.2187 1.7173 0.0520 7 6 3.5341 0.9620 1.9275 8 7 4.7314 0.9672 2.4714 9 14 2.0602 0.3842 2.9191 10 1 1.8798 -1.0778 2.7316 11 1 2.2869 0.6745 4.3577 12 1 0.8421 1.0967 2.4565 13 6 2.0855 1.8750 -1.4175 14 6 2.6207 1.0689 -2.4046 15 6 2.6993 1.5292 -3.7058 16 6 2.2510 2.7990 -4.0180 17 6 2.3400 3.3022 -5.4356 18 6 3.2128 4.5582 -5.4771 19 6 2.9602 2.2208 -6.3227 20 6 0.9376 3.6385 -5.9465 21 6 1.7205 3.6071 -3.0297 22 6 1.6380 3.1452 -1.7294 23 1 -0.3633 0.5895 0.8417 24 1 -0.3633 0.4343 -0.9314 25 1 -0.3633 -1.0237 0.0896 26 1 1.8306 -0.5262 0.7814 27 1 4.8492 0.6713 3.3877 28 1 2.9748 0.0784 -2.1599 29 1 3.1134 0.8977 -4.4778 30 1 4.2119 4.3185 -5.1133 31 1 3.2775 4.9219 -6.5027 32 1 2.7711 5.3286 -4.8452 33 1 2.3386 1.3260 -6.2930 34 1 3.0251 2.5849 -7.3480 35 1 3.9594 1.9812 -5.9586 36 1 0.4959 4.4090 -5.3145 37 1 1.0019 4.0021 -6.9720 38 1 0.3158 2.7437 -5.9169 39 1 1.3706 4.5993 -3.2736 40 1 1.2232 3.7764 -0.9575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259483611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:01 Heat of formation + Delta-G solvation = -3.049986 kcal Electronic energy + Delta-G solvation = -18215.204103 eV Core-core repulsion = 15607.506410 eV Total energy + Delta-G solvation = -2607.697693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74369 -38.34917 -36.34252 -34.37388 -31.84805 -31.51436 -28.92855 -28.14328 -28.02132 -25.49240 -24.62467 -23.01027 -21.83786 -19.90986 -18.97258 -17.68860 -17.13971 -16.24083 -15.79289 -15.36138 -15.18369 -15.05310 -14.99062 -14.75282 -14.36753 -14.02709 -13.93230 -13.56088 -13.14584 -12.89753 -12.86040 -12.68478 -12.56909 -12.47321 -12.16537 -12.09285 -11.83738 -11.71976 -11.45451 -11.29455 -11.19590 -10.91402 -9.62611 -9.32114 -9.16112 -8.39151 -6.46976 0.66771 0.71956 1.18989 1.25367 1.33700 2.17858 2.86349 3.06617 3.67185 3.79287 3.94450 4.20980 4.26335 4.33671 4.35173 4.49728 4.50299 4.57645 4.73574 4.77824 4.83826 4.85717 4.94298 4.96710 4.97574 5.08435 5.09291 5.16784 5.25141 5.31009 5.35556 5.42910 5.46773 5.52758 5.74312 5.88568 5.97372 6.12334 6.34276 6.43459 6.51188 6.68119 7.16554 8.76295 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035220 B = 0.005809 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.801845 B = 4819.199961 C = 5070.483900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.694 5.694 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.513 4.513 6 H 0.034 0.966 7 C 0.020 3.980 8 N -0.936 5.936 9 Si 0.932 3.068 10 H -0.253 1.253 11 H -0.288 1.288 12 H -0.251 1.251 13 C -0.060 4.060 14 C -0.102 4.102 15 C -0.131 4.131 16 C -0.086 4.086 17 C -0.026 4.026 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.139 4.139 23 H 0.013 0.987 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.325 0.675 27 H 0.270 0.730 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.136 0.864 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 3.651 -15.284 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.329 5.329 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.552 4.552 6 H 0.053 0.947 7 C -0.179 4.179 8 N -0.576 5.576 9 Si 0.757 3.243 10 H -0.178 1.178 11 H -0.215 1.215 12 H -0.176 1.176 13 C -0.061 4.061 14 C -0.120 4.120 15 C -0.149 4.149 16 C -0.086 4.086 17 C -0.026 4.026 18 C -0.194 4.194 19 C -0.199 4.199 20 C -0.190 4.190 21 C -0.136 4.136 22 C -0.158 4.158 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.147 0.853 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.154 0.846 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.154 0.846 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.965 3.534 -15.804 18.510 hybrid contribution -0.140 -0.147 2.170 2.180 sum -9.105 3.388 -13.634 16.741 Atomic orbital electron populations 1.22373 0.88332 1.01875 1.00377 1.60872 1.07298 1.15762 1.48995 1.18423 0.93411 0.86213 0.90696 0.97871 1.21193 0.93162 1.43413 0.97395 0.94745 1.25862 0.98555 0.95047 0.98471 1.70018 1.23906 1.48422 1.15211 0.86094 0.80272 0.80115 0.77840 1.17820 1.21514 1.17583 1.19974 0.96697 0.94289 0.95148 1.20948 0.98559 0.99629 0.92880 1.21338 1.01104 0.96613 0.95846 1.19994 0.98853 0.93790 0.95964 1.19509 0.97014 0.96135 0.89936 1.21880 0.98801 0.96149 1.02534 1.21943 1.00351 0.98095 0.99523 1.21853 0.94315 1.01400 1.01476 1.21006 1.00644 1.00113 0.91824 1.21132 1.01869 0.95485 0.97286 0.96806 0.91536 0.90192 0.85334 0.92094 0.87570 0.84633 0.93792 0.90568 0.92537 0.92410 0.90757 0.93009 0.92491 0.90718 0.93145 0.84575 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 10.09 127.69 1.29 2.00 16 2 N -0.69 -30.64 5.72 -522.48 -2.99 -33.63 16 3 C 0.22 10.70 1.60 43.42 0.07 10.77 16 4 H 0.00 0.19 6.56 -2.39 -0.02 0.17 16 5 C -0.51 -29.84 9.19 25.60 0.24 -29.60 16 6 H 0.03 2.26 7.98 -2.91 -0.02 2.23 16 7 C 0.02 1.15 5.39 84.66 0.46 1.61 16 8 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 9 Si 0.93 43.28 24.43 68.60 1.68 44.96 16 10 H -0.25 -10.90 6.93 99.48 0.69 -10.21 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.25 -11.08 5.38 99.48 0.54 -10.55 16 13 C -0.06 -2.65 4.76 -19.87 -0.09 -2.74 16 14 C -0.10 -4.20 9.27 22.27 0.21 -3.99 16 15 C -0.13 -4.42 8.98 22.27 0.20 -4.22 16 16 C -0.09 -2.56 4.76 -19.87 -0.09 -2.65 16 17 C -0.03 -0.57 0.85 -52.93 -0.05 -0.61 16 18 C -0.14 -2.75 8.29 71.98 0.60 -2.15 16 19 C -0.14 -2.76 7.13 71.98 0.51 -2.25 16 20 C -0.13 -2.45 8.29 71.98 0.60 -1.85 16 21 C -0.12 -3.73 8.71 22.27 0.19 -3.54 16 22 C -0.14 -5.34 9.67 22.27 0.22 -5.12 16 23 H 0.01 0.49 6.72 -2.39 -0.02 0.48 16 24 H 0.07 2.26 8.12 -2.39 -0.02 2.25 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.33 14.97 4.66 -89.69 -0.42 14.55 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.11 4.67 7.89 -2.91 -0.02 4.65 16 29 H 0.14 3.90 5.90 -2.91 -0.02 3.88 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.13 7.39 -2.39 -0.02 1.11 16 33 H 0.06 1.13 7.51 -2.39 -0.02 1.11 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.08 7.52 -2.38 -0.02 1.06 16 36 H 0.06 1.04 7.39 -2.39 -0.02 1.02 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.14 3.49 7.10 -2.91 -0.02 3.47 16 40 H 0.11 4.18 8.00 -2.91 -0.02 4.15 16 Total: -1.00 -65.30 310.40 3.72 -61.58 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.40 Total: 29.21 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 4.34 Total: -44.36 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -2.69 Total: -91.37 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.68 Total: 44.96 kcal Total: -65.30 3.72 -61.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259483611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.526 kcal (2) G-P(sol) polarization free energy of solvation -65.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds