Wall clock time and date at job start Mon Mar 30 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99929 * 2 1 4 4 H 1.08989 * 109.47466 * 34.02292 * 3 2 1 5 5 C 1.53004 * 109.46782 * 154.02478 * 3 2 1 6 6 C 1.50706 * 109.46833 * 294.99565 * 5 3 2 7 7 H 1.07999 * 120.00212 * 0.02562 * 6 5 3 8 8 C 1.37876 * 119.99819 * 180.02562 * 6 5 3 9 9 N 1.31517 * 120.00213 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00073 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47213 * 89.99526 * 10 8 6 12 12 H 1.48496 * 109.47325 * 210.00259 * 10 8 6 13 13 H 1.48503 * 109.46932 * 329.99978 * 10 8 6 14 14 C 1.50702 * 109.47011 * 274.01583 * 3 2 1 15 15 C 1.38227 * 120.00288 * 314.11350 * 14 3 2 16 16 C 1.38234 * 120.00055 * 179.80891 * 15 14 3 17 17 C 1.38241 * 120.00007 * 0.41491 * 16 15 14 18 18 C 1.50694 * 120.00459 * 179.79027 * 17 16 15 19 19 C 1.52997 * 109.47252 * 300.02579 * 18 17 16 20 20 C 1.53007 * 109.46811 * 60.02359 * 18 17 16 21 21 C 1.38242 * 119.99782 * 359.81442 * 17 16 15 22 22 C 1.38235 * 119.99418 * 134.38256 * 14 3 2 23 23 H 1.08995 * 109.47221 * 184.43651 * 1 2 3 24 24 H 1.09005 * 109.46912 * 304.43853 * 1 2 3 25 25 H 1.08999 * 109.46743 * 64.43304 * 1 2 3 26 26 H 1.00900 * 111.00147 * 123.95343 * 2 1 3 27 27 H 1.08999 * 109.47738 * 54.99643 * 5 3 2 28 28 H 1.09005 * 109.46813 * 175.00208 * 5 3 2 29 29 H 0.97000 * 119.99978 * 180.02562 * 9 8 6 30 30 H 1.08002 * 120.00271 * 359.97438 * 15 14 3 31 31 H 1.07991 * 120.00423 * 180.20737 * 16 15 14 32 32 H 1.08997 * 109.47367 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.47254 * 59.99702 * 19 18 17 34 34 H 1.09004 * 109.47179 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.46934 * 299.99780 * 19 18 17 36 36 H 1.09000 * 109.46664 * 180.02562 * 20 18 17 37 37 H 1.08997 * 109.47026 * 300.00051 * 20 18 17 38 38 H 1.08999 * 109.46828 * 60.00060 * 20 18 17 39 39 H 1.07991 * 120.00004 * 179.97438 * 21 17 16 40 40 H 1.08001 * 120.00363 * 359.97438 * 22 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3306 2.0159 0.5749 5 6 3.3889 1.3828 0.6318 6 6 3.2849 0.9957 2.0846 7 1 2.3214 0.7643 2.5141 8 6 4.4198 0.9369 2.8653 9 7 5.5930 1.2192 2.3424 10 14 4.2909 0.4564 4.6659 11 1 4.4258 -1.0167 4.7960 12 1 5.3729 1.1224 5.4346 13 1 2.9715 0.8816 5.1985 14 6 2.0826 1.8761 -1.4174 15 6 2.6232 1.0738 -2.4047 16 6 2.6995 1.5352 -3.7055 17 6 2.2429 2.8022 -4.0174 18 6 2.3303 3.3071 -5.4345 19 6 3.7934 3.3205 -5.8818 20 6 1.5243 2.3875 -6.3541 21 6 1.7065 3.6063 -3.0290 22 6 1.6268 3.1434 -1.7289 23 1 -0.3633 -1.0245 0.0795 24 1 -0.3633 0.5812 0.8476 25 1 -0.3633 0.4435 -0.9270 26 1 1.8306 -0.5261 0.7814 27 1 4.0298 0.6712 0.1112 28 1 3.8159 2.3825 0.5519 29 1 6.3915 1.1775 2.8916 30 1 2.9836 0.0855 -2.1603 31 1 3.1188 0.9072 -4.4775 32 1 1.9255 4.3178 -5.4858 33 1 4.1983 2.3098 -5.8305 34 1 3.8566 3.6853 -6.9071 35 1 4.3676 3.9756 -5.2267 36 1 1.5879 2.7524 -7.3793 37 1 1.9292 1.3768 -6.3028 38 1 0.4820 2.3779 -6.0354 39 1 1.3502 4.5963 -3.2726 40 1 1.2080 3.7717 -0.9568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259493410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:44 Heat of formation + Delta-G solvation = -2.831956 kcal Electronic energy + Delta-G solvation = -17788.856076 eV Core-core repulsion = 15181.167837 eV Total energy + Delta-G solvation = -2607.688239 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.32111 -36.65072 -34.53317 -32.74936 -30.45751 -30.33740 -28.43619 -27.11939 -25.22415 -23.51945 -22.55943 -22.15059 -20.15277 -19.29522 -16.57315 -15.88533 -15.20864 -14.99472 -14.61931 -14.23715 -13.98606 -13.61818 -13.43657 -13.30940 -12.90016 -12.63912 -12.36102 -12.25796 -11.82460 -11.71628 -11.35141 -11.15404 -11.11638 -10.94228 -10.88712 -10.57856 -10.46584 -10.31244 -10.22654 -9.51995 -9.16966 -8.44136 -8.36746 -7.89357 -7.72793 -6.05433 -4.09725 1.87706 1.95616 3.28086 3.35034 3.37214 4.27472 4.41278 4.82527 4.91900 5.04486 5.25665 5.32391 5.46216 5.48377 5.54442 5.61631 5.63897 5.81218 5.84029 5.87032 5.93733 5.98963 6.05853 6.13090 6.26081 6.27633 6.33489 6.36206 6.51534 6.61302 6.76923 6.96227 7.06204 7.25789 7.47511 7.56905 7.60407 7.92921 8.01808 8.23544 8.31863 8.95975 9.54724 11.05084 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.005024 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.155059 B = 5572.026552 C = 6042.130519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.685 5.685 3 C 0.125 3.875 4 H 0.039 0.961 5 C 0.028 3.972 6 C -0.527 4.527 7 H 0.053 0.947 8 C 0.062 3.938 9 N -0.889 5.889 10 Si 0.891 3.109 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.275 1.275 14 C -0.054 4.054 15 C -0.085 4.085 16 C -0.122 4.122 17 C -0.095 4.095 18 C -0.053 4.053 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.124 4.124 22 C -0.122 4.122 23 H 0.056 0.944 24 H 0.015 0.985 25 H 0.053 0.947 26 H 0.357 0.643 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.262 0.738 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.111 0.889 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 2.293 -13.269 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.319 5.319 3 C 0.015 3.985 4 H 0.057 0.943 5 C -0.010 4.010 6 C -0.565 4.565 7 H 0.071 0.929 8 C -0.140 4.140 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.055 4.055 15 C -0.103 4.103 16 C -0.140 4.140 17 C -0.096 4.096 18 C -0.071 4.071 19 C -0.201 4.201 20 C -0.199 4.199 21 C -0.142 4.142 22 C -0.141 4.141 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.072 0.928 26 H 0.178 0.822 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.277 2.226 -13.891 15.838 hybrid contribution -0.171 0.100 2.022 2.032 sum -7.448 2.325 -11.868 14.204 Atomic orbital electron populations 1.22149 0.89835 1.00288 0.99599 1.60387 1.05844 1.14609 1.51016 1.20683 0.99603 0.88216 0.89975 0.94267 1.19268 0.89031 0.97999 0.94657 1.21139 0.93132 1.47178 0.95070 0.92908 1.24980 0.95384 0.95184 0.98422 1.69967 0.98130 1.48409 1.36207 0.86614 0.77717 0.78664 0.85124 1.20554 1.21192 1.19990 1.20174 0.95706 0.93314 0.96293 1.20996 0.97557 1.00004 0.91721 1.20902 1.01106 0.95492 0.96530 1.19666 1.00490 0.94820 0.94581 1.20048 0.96209 0.99104 0.91752 1.21854 0.95530 1.02278 1.00417 1.21845 1.00020 0.99691 0.98386 1.20849 1.01381 0.99061 0.92940 1.21013 1.00984 0.96056 0.96024 0.92561 0.96633 0.92840 0.82185 0.95355 0.95915 0.92871 0.85611 0.86985 0.91058 0.92422 0.92898 0.92504 0.92895 0.92465 0.92723 0.87079 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.53 60.07 0.63 1.15 16 2 N -0.69 -13.26 6.14 -115.25 -0.71 -13.97 16 3 C 0.12 2.62 2.19 -68.86 -0.15 2.47 16 4 H 0.04 0.85 7.52 -51.94 -0.39 0.46 16 5 C 0.03 0.71 4.48 -27.88 -0.12 0.58 16 6 C -0.53 -14.32 8.11 -34.44 -0.28 -14.60 16 7 H 0.05 1.39 7.51 -52.49 -0.39 1.00 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 10 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C -0.05 -1.04 4.80 -104.63 -0.50 -1.54 16 15 C -0.08 -1.54 9.28 -39.59 -0.37 -1.90 16 16 C -0.12 -1.91 8.71 -39.58 -0.34 -2.26 16 17 C -0.10 -1.39 4.78 -104.62 -0.50 -1.89 16 18 C -0.05 -0.61 3.09 -91.77 -0.28 -0.89 16 19 C -0.14 -1.55 9.01 37.16 0.33 -1.21 16 20 C -0.14 -1.44 9.01 37.16 0.33 -1.11 16 21 C -0.12 -1.90 9.67 -39.58 -0.38 -2.28 16 22 C -0.12 -2.12 9.67 -39.58 -0.38 -2.50 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.02 0.25 7.95 -51.93 -0.41 -0.16 16 25 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 26 H 0.36 7.34 7.30 -39.29 -0.29 7.06 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.13 2.36 7.90 -52.49 -0.41 1.94 16 31 H 0.11 1.53 7.10 -52.49 -0.37 1.16 16 32 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 33 H 0.06 0.63 7.39 -51.93 -0.38 0.24 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.59 7.39 -51.93 -0.38 0.20 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.11 1.43 7.95 -52.49 -0.42 1.01 16 40 H 0.11 1.85 8.00 -52.49 -0.42 1.43 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -28.82 326.35 -8.99 -37.81 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.80 Total: 4.90 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -2.11 Total: -24.33 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.03 Total: -39.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.82 -8.99 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259493410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.976 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds