Wall clock time and date at job start Mon Mar 30 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99929 * 2 1 4 4 H 1.08989 * 109.47466 * 34.02292 * 3 2 1 5 5 C 1.53004 * 109.46782 * 154.02478 * 3 2 1 6 6 C 1.50706 * 109.46833 * 294.99565 * 5 3 2 7 7 H 1.07999 * 120.00212 * 0.02562 * 6 5 3 8 8 C 1.37876 * 119.99819 * 180.02562 * 6 5 3 9 9 N 1.31517 * 120.00213 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00073 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47213 * 89.99526 * 10 8 6 12 12 H 1.48496 * 109.47325 * 210.00259 * 10 8 6 13 13 H 1.48503 * 109.46932 * 329.99978 * 10 8 6 14 14 C 1.50702 * 109.47011 * 274.01583 * 3 2 1 15 15 C 1.38227 * 120.00288 * 314.11350 * 14 3 2 16 16 C 1.38234 * 120.00055 * 179.80891 * 15 14 3 17 17 C 1.38241 * 120.00007 * 0.41491 * 16 15 14 18 18 C 1.50694 * 120.00459 * 179.79027 * 17 16 15 19 19 C 1.52997 * 109.47252 * 300.02579 * 18 17 16 20 20 C 1.53007 * 109.46811 * 60.02359 * 18 17 16 21 21 C 1.38242 * 119.99782 * 359.81442 * 17 16 15 22 22 C 1.38235 * 119.99418 * 134.38256 * 14 3 2 23 23 H 1.08995 * 109.47221 * 184.43651 * 1 2 3 24 24 H 1.09005 * 109.46912 * 304.43853 * 1 2 3 25 25 H 1.08999 * 109.46743 * 64.43304 * 1 2 3 26 26 H 1.00900 * 111.00147 * 123.95343 * 2 1 3 27 27 H 1.08999 * 109.47738 * 54.99643 * 5 3 2 28 28 H 1.09005 * 109.46813 * 175.00208 * 5 3 2 29 29 H 0.97000 * 119.99978 * 180.02562 * 9 8 6 30 30 H 1.08002 * 120.00271 * 359.97438 * 15 14 3 31 31 H 1.07991 * 120.00423 * 180.20737 * 16 15 14 32 32 H 1.08997 * 109.47367 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.47254 * 59.99702 * 19 18 17 34 34 H 1.09004 * 109.47179 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.46934 * 299.99780 * 19 18 17 36 36 H 1.09000 * 109.46664 * 180.02562 * 20 18 17 37 37 H 1.08997 * 109.47026 * 300.00051 * 20 18 17 38 38 H 1.08999 * 109.46828 * 60.00060 * 20 18 17 39 39 H 1.07991 * 120.00004 * 179.97438 * 21 17 16 40 40 H 1.08001 * 120.00363 * 359.97438 * 22 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3306 2.0159 0.5749 5 6 3.3889 1.3828 0.6318 6 6 3.2849 0.9957 2.0846 7 1 2.3214 0.7643 2.5141 8 6 4.4198 0.9369 2.8653 9 7 5.5930 1.2192 2.3424 10 14 4.2909 0.4564 4.6659 11 1 4.4258 -1.0167 4.7960 12 1 5.3729 1.1224 5.4346 13 1 2.9715 0.8816 5.1985 14 6 2.0826 1.8761 -1.4174 15 6 2.6232 1.0738 -2.4047 16 6 2.6995 1.5352 -3.7055 17 6 2.2429 2.8022 -4.0174 18 6 2.3303 3.3071 -5.4345 19 6 3.7934 3.3205 -5.8818 20 6 1.5243 2.3875 -6.3541 21 6 1.7065 3.6063 -3.0290 22 6 1.6268 3.1434 -1.7289 23 1 -0.3633 -1.0245 0.0795 24 1 -0.3633 0.5812 0.8476 25 1 -0.3633 0.4435 -0.9270 26 1 1.8306 -0.5261 0.7814 27 1 4.0298 0.6712 0.1112 28 1 3.8159 2.3825 0.5519 29 1 6.3915 1.1775 2.8916 30 1 2.9836 0.0855 -2.1603 31 1 3.1188 0.9072 -4.4775 32 1 1.9255 4.3178 -5.4858 33 1 4.1983 2.3098 -5.8305 34 1 3.8566 3.6853 -6.9071 35 1 4.3676 3.9756 -5.2267 36 1 1.5879 2.7524 -7.3793 37 1 1.9292 1.3768 -6.3028 38 1 0.4820 2.3779 -6.0354 39 1 1.3502 4.5963 -3.2726 40 1 1.2080 3.7717 -0.9568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259493410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:43 Heat of formation + Delta-G solvation = -18.403974 kcal Electronic energy + Delta-G solvation = -17789.531329 eV Core-core repulsion = 15181.167837 eV Total energy + Delta-G solvation = -2608.363492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62340 -38.09625 -35.74720 -34.78500 -31.95257 -31.69624 -30.07577 -27.91971 -26.95947 -24.99150 -24.03123 -23.61833 -21.51388 -20.59633 -18.60693 -17.22439 -16.82450 -16.50664 -16.03868 -15.84236 -15.30110 -14.94190 -14.55762 -14.38460 -14.25185 -14.11484 -13.94284 -13.29777 -13.28453 -13.20639 -12.88348 -12.74678 -12.44675 -12.40092 -12.35492 -12.01156 -11.95955 -11.60228 -11.44469 -11.35487 -11.12145 -10.59891 -9.69151 -9.28723 -9.25517 -8.20807 -6.33238 0.56160 0.64161 1.39896 1.40622 1.51155 2.39084 2.95909 3.10978 3.54263 3.82387 3.96724 4.16823 4.25339 4.27968 4.39436 4.51301 4.53774 4.60960 4.71145 4.76527 4.79943 4.86338 4.87089 5.00338 5.03939 5.05125 5.15911 5.26316 5.30271 5.40101 5.42061 5.44898 5.47683 5.65895 5.78792 5.83164 5.87769 6.15311 6.25454 6.36986 6.61623 6.81330 7.36100 8.90483 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.005024 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.155059 B = 5572.026552 C = 6042.130519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.688 5.688 3 C 0.139 3.861 4 H 0.030 0.970 5 C 0.040 3.960 6 C -0.538 4.538 7 H 0.060 0.940 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.964 3.036 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.265 1.265 14 C -0.081 4.081 15 C -0.101 4.101 16 C -0.122 4.122 17 C -0.088 4.088 18 C -0.051 4.051 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.124 4.124 22 C -0.133 4.133 23 H 0.079 0.921 24 H 0.015 0.985 25 H 0.057 0.943 26 H 0.348 0.652 27 H -0.001 1.001 28 H -0.012 1.012 29 H 0.264 0.736 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.140 0.860 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 2.619 -14.341 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.320 5.320 3 C 0.029 3.971 4 H 0.048 0.952 5 C 0.003 3.997 6 C -0.576 4.576 7 H 0.078 0.922 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.789 3.211 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.189 1.189 14 C -0.082 4.082 15 C -0.120 4.120 16 C -0.140 4.140 17 C -0.088 4.088 18 C -0.070 4.070 19 C -0.201 4.201 20 C -0.197 4.197 21 C -0.141 4.141 22 C -0.152 4.152 23 H 0.098 0.902 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.167 0.833 27 H 0.017 0.983 28 H 0.007 0.993 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.158 0.842 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.592 2.550 -14.975 17.452 hybrid contribution 0.229 0.030 2.254 2.266 sum -8.364 2.579 -12.721 15.441 Atomic orbital electron populations 1.22195 0.87606 1.01884 0.99791 1.60414 1.07884 1.13335 1.50400 1.20360 0.96473 0.89123 0.91119 0.95175 1.19032 0.91283 0.94904 0.94476 1.21488 0.93491 1.46714 0.95888 0.92201 1.25911 0.94923 0.95042 1.03340 1.70110 0.98990 1.49682 1.38118 0.85462 0.77965 0.78585 0.79101 1.19582 1.21000 1.18943 1.20069 0.98200 0.94644 0.95313 1.20968 0.98482 0.99563 0.92944 1.21107 1.00723 0.96390 0.95773 1.20097 0.98376 0.93978 0.96353 1.20136 0.97078 1.00061 0.89709 1.21858 0.94710 1.01940 1.01555 1.21829 0.99441 0.99248 0.99195 1.21193 1.00619 1.00319 0.92011 1.21167 1.01231 0.95383 0.97414 0.90193 0.96615 0.92400 0.83294 0.98308 0.99330 0.92751 0.87197 0.85043 0.89606 0.92858 0.90618 0.93566 0.90781 0.92795 0.92997 0.84190 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 10.53 127.69 1.34 2.46 16 2 N -0.69 -27.16 6.14 -518.53 -3.18 -30.34 16 3 C 0.14 6.07 2.19 44.17 0.10 6.17 16 4 H 0.03 1.35 7.52 -2.39 -0.02 1.33 16 5 C 0.04 2.17 4.48 29.85 0.13 2.31 16 6 C -0.54 -30.02 8.11 25.60 0.21 -29.81 16 7 H 0.06 3.19 7.51 -2.91 -0.02 3.16 16 8 C 0.01 0.36 5.46 84.65 0.46 0.82 16 9 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 10 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 C -0.08 -3.21 4.80 -19.87 -0.10 -3.30 16 15 C -0.10 -3.77 9.28 22.27 0.21 -3.56 16 16 C -0.12 -3.73 8.71 22.27 0.19 -3.54 16 17 C -0.09 -2.40 4.78 -19.86 -0.09 -2.49 16 18 C -0.05 -1.03 3.09 -11.54 -0.04 -1.06 16 19 C -0.14 -2.71 9.01 71.98 0.65 -2.06 16 20 C -0.14 -2.39 9.01 71.98 0.65 -1.75 16 21 C -0.12 -3.56 9.67 22.27 0.22 -3.35 16 22 C -0.13 -4.62 9.67 22.27 0.22 -4.40 16 23 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.02 0.49 7.95 -2.38 -0.02 0.47 16 25 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 26 H 0.35 14.62 7.30 -89.69 -0.65 13.97 16 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 28 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 29 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.11 4.34 7.90 -2.91 -0.02 4.32 16 31 H 0.13 3.42 7.10 -2.91 -0.02 3.40 16 32 H 0.09 1.51 7.88 -2.39 -0.02 1.49 16 33 H 0.05 1.05 7.39 -2.38 -0.02 1.03 16 34 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.96 7.39 -2.39 -0.02 0.94 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.14 3.19 7.95 -2.92 -0.02 3.16 16 40 H 0.12 3.86 8.00 -2.91 -0.02 3.84 16 Total: -1.00 -63.54 326.35 3.61 -59.92 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.34 Total: 24.35 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 4.15 Total: -43.57 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.90 Total: -86.59 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -63.54 3.61 -59.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259493410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.521 kcal (2) G-P(sol) polarization free energy of solvation -63.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds