Wall clock time and date at job start Mon Mar 30 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99770 * 2 1 4 4 H 1.09003 * 109.46787 * 324.89947 * 3 2 1 5 5 C 1.52999 * 109.46873 * 204.90427 * 3 2 1 6 6 C 1.50699 * 109.47256 * 64.99931 * 5 3 2 7 7 H 1.08000 * 119.99948 * 359.97438 * 6 5 3 8 8 C 1.37880 * 119.99813 * 180.02562 * 6 5 3 9 9 N 1.31512 * 120.00332 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99629 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46606 * 90.00464 * 10 8 6 12 12 H 1.48503 * 109.46971 * 209.99878 * 10 8 6 13 13 H 1.48499 * 109.47409 * 330.00578 * 10 8 6 14 14 C 1.50695 * 109.47510 * 84.90196 * 3 2 1 15 15 C 1.38241 * 120.00234 * 226.83636 * 14 3 2 16 16 C 1.38233 * 119.99971 * 179.97438 * 15 14 3 17 17 C 1.38232 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99926 * 179.97438 * 17 16 15 19 19 C 1.52994 * 109.46932 * 119.99979 * 18 17 16 20 20 C 1.53000 * 109.47200 * 240.00540 * 18 17 16 21 21 C 1.38236 * 120.00358 * 0.02562 * 17 16 15 22 22 C 1.38233 * 119.99601 * 359.97438 * 21 17 16 23 23 H 1.09000 * 109.46931 * 184.30894 * 1 2 3 24 24 H 1.08999 * 109.47431 * 304.30893 * 1 2 3 25 25 H 1.08995 * 109.47350 * 64.30737 * 1 2 3 26 26 H 1.00898 * 110.99560 * 123.94446 * 2 1 3 27 27 H 1.09001 * 109.47192 * 184.99737 * 5 3 2 28 28 H 1.09003 * 109.46846 * 304.99519 * 5 3 2 29 29 H 0.96994 * 119.99830 * 179.97438 * 9 8 6 30 30 H 1.08002 * 119.99668 * 0.25789 * 15 14 3 31 31 H 1.08000 * 119.99483 * 179.97438 * 16 15 14 32 32 H 1.09004 * 109.46826 * 0.02562 * 18 17 16 33 33 H 1.09004 * 109.47234 * 60.00410 * 19 18 17 34 34 H 1.08999 * 109.47599 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.47775 * 300.00390 * 19 18 17 36 36 H 1.08997 * 109.47174 * 59.99840 * 20 18 17 37 37 H 1.08999 * 109.46827 * 180.02562 * 20 18 17 38 38 H 1.09004 * 109.46903 * 299.99552 * 20 18 17 39 39 H 1.07999 * 120.00292 * 179.97438 * 21 17 16 40 40 H 1.08002 * 120.00150 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3406 2.0119 -0.5909 5 6 3.3996 1.3787 -0.6074 6 6 3.3211 0.9818 -2.0591 7 1 2.3652 0.7474 -2.5038 8 6 4.4696 0.9169 -2.8192 9 7 5.6338 1.2009 -2.2772 10 14 4.3723 0.4242 -4.6184 11 1 4.1848 1.6372 -5.4543 12 1 5.6301 -0.2594 -5.0132 13 1 3.2246 -0.4967 -4.8181 14 6 2.0576 1.8857 1.4151 15 6 1.5734 3.1454 1.7147 16 6 1.6300 3.6169 3.0129 17 6 2.1702 2.8286 4.0116 18 6 2.2324 3.3429 5.4269 19 6 1.4336 2.4135 6.3427 20 6 3.6899 3.3864 5.8901 21 6 2.6544 1.5689 3.7122 22 6 2.5978 1.0974 2.4139 23 1 -0.3633 -1.0248 0.0772 24 1 -0.3634 0.5792 0.8488 25 1 -0.3634 0.4455 -0.9260 26 1 1.8305 -0.5260 0.7815 27 1 3.8253 2.3789 -0.5268 28 1 4.0313 0.6707 -0.0708 29 1 6.4417 1.1549 -2.8119 30 1 1.1468 3.7594 0.9352 31 1 1.2521 4.6013 3.2468 32 1 1.8077 4.3459 5.4679 33 1 1.8579 1.4103 6.3018 34 1 1.4781 2.7856 7.3663 35 1 0.3952 2.3825 6.0127 36 1 4.2590 4.0485 5.2376 37 1 3.7348 3.7579 6.9139 38 1 4.1142 2.3832 5.8492 39 1 3.0768 0.9532 4.4924 40 1 2.9764 0.1134 2.1798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259493411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:46 Heat of formation + Delta-G solvation = 2.494893 kcal Electronic energy + Delta-G solvation = -17801.229269 eV Core-core repulsion = 15193.772020 eV Total energy + Delta-G solvation = -2607.457249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55860 -36.78083 -34.48747 -32.67017 -30.61292 -30.38922 -28.40531 -27.20867 -25.24999 -23.56081 -22.73257 -22.21338 -20.15458 -19.45206 -16.85925 -15.89747 -15.28944 -14.90859 -14.59493 -14.30973 -13.97415 -13.59788 -13.49310 -13.32349 -12.98311 -12.91676 -12.42240 -12.24357 -11.91833 -11.72407 -11.56422 -11.20916 -11.18597 -10.92299 -10.79744 -10.56747 -10.49423 -10.41186 -10.07022 -9.53874 -8.98399 -8.58279 -8.23980 -8.05890 -7.64352 -5.85811 -3.84041 1.69455 1.74124 3.40885 3.46881 3.52117 4.08443 4.58666 4.70814 4.80926 5.01103 5.15620 5.24358 5.30387 5.42273 5.43559 5.51392 5.53407 5.68400 5.74836 5.75677 5.83700 5.90906 5.92182 5.97616 6.14752 6.16302 6.20361 6.31124 6.37501 6.44555 6.77202 6.87961 6.88499 7.02478 7.36101 7.55513 7.69891 8.01358 8.07125 8.17569 8.59611 9.20954 9.77102 11.26074 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.031389 B = 0.005029 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.815598 B = 5566.513030 C = 6034.279052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.664 5.664 3 C 0.127 3.873 4 H 0.072 0.928 5 C 0.041 3.959 6 C -0.490 4.490 7 H 0.059 0.941 8 C 0.051 3.949 9 N -0.903 5.903 10 Si 0.890 3.110 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.274 1.274 14 C -0.094 4.094 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.094 4.094 18 C -0.053 4.053 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.113 4.113 22 C -0.114 4.114 23 H 0.056 0.944 24 H 0.010 0.990 25 H 0.060 0.940 26 H 0.331 0.669 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.257 0.743 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.115 0.885 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 2.817 15.280 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.293 5.293 3 C 0.018 3.982 4 H 0.091 0.909 5 C 0.004 3.996 6 C -0.529 4.529 7 H 0.077 0.923 8 C -0.149 4.149 9 N -0.544 5.544 10 Si 0.719 3.281 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.199 1.199 14 C -0.096 4.096 15 C -0.134 4.134 16 C -0.137 4.137 17 C -0.094 4.094 18 C -0.072 4.072 19 C -0.200 4.200 20 C -0.201 4.201 21 C -0.131 4.131 22 C -0.132 4.132 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.150 0.850 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.193 2.727 14.530 16.902 hybrid contribution -0.071 0.052 -0.126 0.154 sum -8.264 2.779 14.404 16.837 Atomic orbital electron populations 1.22182 0.89684 1.00349 0.99808 1.60607 1.05736 1.14013 1.48986 1.20998 1.00947 0.87808 0.88485 0.90931 1.19097 0.87892 0.97005 0.95623 1.21127 0.93172 1.43965 0.94607 0.92275 1.24999 0.95574 0.96068 0.98219 1.69970 0.97878 1.50459 1.36046 0.86620 0.77264 0.78515 0.85722 1.21021 1.21517 1.19905 1.21156 0.95963 0.94530 0.97943 1.21065 1.00339 0.95844 0.96131 1.20955 1.00657 0.99160 0.92929 1.19706 1.00132 0.94803 0.94759 1.20065 0.96421 0.99136 0.91556 1.21848 1.00015 0.99576 0.98542 1.21856 0.95455 1.02294 1.00519 1.20850 1.00368 0.95594 0.96294 1.20963 0.99428 1.00270 0.92530 0.92523 0.97109 0.92120 0.85024 0.96371 0.96294 0.93314 0.86401 0.86806 0.90904 0.92486 0.92740 0.92718 0.92437 0.92760 0.92427 0.86721 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.48 60.07 0.63 1.11 16 2 N -0.66 -12.81 6.31 -115.25 -0.73 -13.54 16 3 C 0.13 2.64 2.17 -68.87 -0.15 2.49 16 4 H 0.07 1.53 7.65 -51.93 -0.40 1.13 16 5 C 0.04 1.07 4.56 -27.88 -0.13 0.94 16 6 C -0.49 -13.97 8.84 -34.44 -0.30 -14.28 16 7 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 8 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 9 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 10 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 14 C -0.09 -1.70 4.65 -104.62 -0.49 -2.19 16 15 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 16 C -0.12 -1.71 9.67 -39.59 -0.38 -2.09 16 17 C -0.09 -1.28 4.78 -104.62 -0.50 -1.78 16 18 C -0.05 -0.57 3.09 -91.77 -0.28 -0.86 16 19 C -0.14 -1.34 9.01 37.15 0.33 -1.01 16 20 C -0.14 -1.46 9.01 37.16 0.33 -1.13 16 21 C -0.11 -1.64 8.71 -39.58 -0.34 -1.99 16 22 C -0.11 -1.90 8.95 -39.58 -0.35 -2.25 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.01 0.16 7.93 -51.93 -0.41 -0.25 16 25 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 26 H 0.33 5.92 6.77 -39.29 -0.27 5.66 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.12 1.81 7.99 -52.49 -0.42 1.39 16 31 H 0.11 1.37 7.95 -52.49 -0.42 0.95 16 32 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 33 H 0.06 0.54 7.39 -51.93 -0.38 0.15 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 39 H 0.11 1.43 7.10 -52.49 -0.37 1.06 16 40 H 0.12 1.98 6.91 -52.49 -0.36 1.62 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -30.84 325.62 -8.97 -39.80 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.75 Total: 2.38 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -2.11 Total: -23.93 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.01 Total: -40.42 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.84 -8.97 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259493411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.298 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds