Wall clock time and date at job start Mon Mar 30 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99770 * 2 1 4 4 H 1.09003 * 109.46787 * 324.89947 * 3 2 1 5 5 C 1.52999 * 109.46873 * 204.90427 * 3 2 1 6 6 C 1.50699 * 109.47256 * 64.99931 * 5 3 2 7 7 H 1.08000 * 119.99948 * 359.97438 * 6 5 3 8 8 C 1.37880 * 119.99813 * 180.02562 * 6 5 3 9 9 N 1.31512 * 120.00332 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99629 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46606 * 90.00464 * 10 8 6 12 12 H 1.48503 * 109.46971 * 209.99878 * 10 8 6 13 13 H 1.48499 * 109.47409 * 330.00578 * 10 8 6 14 14 C 1.50695 * 109.47510 * 84.90196 * 3 2 1 15 15 C 1.38241 * 120.00234 * 226.83636 * 14 3 2 16 16 C 1.38233 * 119.99971 * 179.97438 * 15 14 3 17 17 C 1.38232 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99926 * 179.97438 * 17 16 15 19 19 C 1.52994 * 109.46932 * 119.99979 * 18 17 16 20 20 C 1.53000 * 109.47200 * 240.00540 * 18 17 16 21 21 C 1.38236 * 120.00358 * 0.02562 * 17 16 15 22 22 C 1.38233 * 119.99601 * 359.97438 * 21 17 16 23 23 H 1.09000 * 109.46931 * 184.30894 * 1 2 3 24 24 H 1.08999 * 109.47431 * 304.30893 * 1 2 3 25 25 H 1.08995 * 109.47350 * 64.30737 * 1 2 3 26 26 H 1.00898 * 110.99560 * 123.94446 * 2 1 3 27 27 H 1.09001 * 109.47192 * 184.99737 * 5 3 2 28 28 H 1.09003 * 109.46846 * 304.99519 * 5 3 2 29 29 H 0.96994 * 119.99830 * 179.97438 * 9 8 6 30 30 H 1.08002 * 119.99668 * 0.25789 * 15 14 3 31 31 H 1.08000 * 119.99483 * 179.97438 * 16 15 14 32 32 H 1.09004 * 109.46826 * 0.02562 * 18 17 16 33 33 H 1.09004 * 109.47234 * 60.00410 * 19 18 17 34 34 H 1.08999 * 109.47599 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.47775 * 300.00390 * 19 18 17 36 36 H 1.08997 * 109.47174 * 59.99840 * 20 18 17 37 37 H 1.08999 * 109.46827 * 180.02562 * 20 18 17 38 38 H 1.09004 * 109.46903 * 299.99552 * 20 18 17 39 39 H 1.07999 * 120.00292 * 179.97438 * 21 17 16 40 40 H 1.08002 * 120.00150 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3406 2.0119 -0.5909 5 6 3.3996 1.3787 -0.6074 6 6 3.3211 0.9818 -2.0591 7 1 2.3652 0.7474 -2.5038 8 6 4.4696 0.9169 -2.8192 9 7 5.6338 1.2009 -2.2772 10 14 4.3723 0.4242 -4.6184 11 1 4.1848 1.6372 -5.4543 12 1 5.6301 -0.2594 -5.0132 13 1 3.2246 -0.4967 -4.8181 14 6 2.0576 1.8857 1.4151 15 6 1.5734 3.1454 1.7147 16 6 1.6300 3.6169 3.0129 17 6 2.1702 2.8286 4.0116 18 6 2.2324 3.3429 5.4269 19 6 1.4336 2.4135 6.3427 20 6 3.6899 3.3864 5.8901 21 6 2.6544 1.5689 3.7122 22 6 2.5978 1.0974 2.4139 23 1 -0.3633 -1.0248 0.0772 24 1 -0.3634 0.5792 0.8488 25 1 -0.3634 0.4455 -0.9260 26 1 1.8305 -0.5260 0.7815 27 1 3.8253 2.3789 -0.5268 28 1 4.0313 0.6707 -0.0708 29 1 6.4417 1.1549 -2.8119 30 1 1.1468 3.7594 0.9352 31 1 1.2521 4.6013 3.2468 32 1 1.8077 4.3459 5.4679 33 1 1.8579 1.4103 6.3018 34 1 1.4781 2.7856 7.3663 35 1 0.3952 2.3825 6.0127 36 1 4.2590 4.0485 5.2376 37 1 3.7348 3.7579 6.9139 38 1 4.1142 2.3832 5.8492 39 1 3.0768 0.9532 4.4924 40 1 2.9764 0.1134 2.1798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259493411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:46 Heat of formation + Delta-G solvation = -15.027456 kcal Electronic energy + Delta-G solvation = -17801.989095 eV Core-core repulsion = 15193.772020 eV Total energy + Delta-G solvation = -2608.217075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79168 -38.12385 -35.64986 -34.78241 -31.93716 -31.82286 -30.02312 -27.95213 -26.95318 -25.05945 -23.99760 -23.75833 -21.50036 -20.70355 -18.64019 -17.51125 -16.59508 -16.52494 -16.12756 -15.67481 -15.22634 -14.82726 -14.72838 -14.43731 -14.29500 -14.15887 -14.04122 -13.31937 -13.27630 -13.23039 -12.91742 -12.75432 -12.44686 -12.40009 -12.32776 -12.01285 -11.93917 -11.62933 -11.46788 -11.36867 -11.12639 -10.50080 -9.80192 -9.37425 -9.12554 -8.10322 -6.16692 0.46006 0.52177 1.41865 1.43431 1.55114 2.47254 2.86077 3.21840 3.55139 3.76230 3.85310 4.04090 4.14464 4.17977 4.35626 4.44903 4.53301 4.59474 4.64661 4.67516 4.73483 4.83465 4.97857 4.99845 5.01752 5.04724 5.11870 5.19375 5.22831 5.36274 5.41634 5.46281 5.56354 5.59780 5.72090 5.75946 5.87913 6.15003 6.28442 6.43361 6.65195 6.96643 7.49184 9.01714 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.031389 B = 0.005029 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.815598 B = 5566.513030 C = 6034.279052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.684 5.684 3 C 0.143 3.857 4 H 0.063 0.937 5 C 0.051 3.949 6 C -0.504 4.504 7 H 0.058 0.942 8 C -0.005 4.005 9 N -0.940 5.940 10 Si 0.961 3.039 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.266 1.266 14 C -0.118 4.118 15 C -0.127 4.127 16 C -0.120 4.120 17 C -0.087 4.087 18 C -0.052 4.052 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.114 4.114 22 C -0.126 4.126 23 H 0.078 0.922 24 H 0.020 0.980 25 H 0.055 0.945 26 H 0.337 0.663 27 H -0.014 1.014 28 H -0.009 1.009 29 H 0.259 0.741 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.136 0.864 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 3.031 16.521 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.314 5.314 3 C 0.033 3.967 4 H 0.082 0.918 5 C 0.014 3.986 6 C -0.542 4.542 7 H 0.076 0.924 8 C -0.201 4.201 9 N -0.582 5.582 10 Si 0.786 3.214 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C -0.120 4.120 15 C -0.146 4.146 16 C -0.138 4.138 17 C -0.087 4.087 18 C -0.070 4.070 19 C -0.197 4.197 20 C -0.201 4.201 21 C -0.132 4.132 22 C -0.145 4.145 23 H 0.097 0.903 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.004 0.996 28 H 0.009 0.991 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.154 0.846 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.393 2.939 15.778 18.596 hybrid contribution 0.298 0.011 -0.420 0.516 sum -9.094 2.950 15.358 18.090 Atomic orbital electron populations 1.22178 0.87435 1.01903 0.99918 1.60486 1.07932 1.13266 1.49699 1.20495 0.97328 0.88848 0.90013 0.91829 1.18881 0.90804 0.94043 0.94891 1.21466 0.93147 1.43651 0.95946 0.92401 1.25899 0.95165 0.96021 1.03061 1.70108 0.98623 1.51563 1.37903 0.85509 0.77461 0.78459 0.79943 1.20023 1.21072 1.19077 1.20909 0.98635 0.95838 0.96648 1.21213 1.00616 0.95259 0.97487 1.21275 1.00118 1.00349 0.92041 1.20135 0.98093 0.94085 0.96387 1.20149 0.97198 1.00028 0.89672 1.21831 0.99462 0.99202 0.99245 1.21861 0.94724 1.01980 1.01549 1.21088 0.99994 0.96348 0.95729 1.21021 0.99867 1.00155 0.93448 0.90310 0.96167 0.92613 0.84402 0.99600 0.99061 0.93195 0.86076 0.84096 0.89601 0.92664 0.90794 0.92977 0.93586 0.90614 0.92764 0.84647 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.10 10.48 127.69 1.34 2.44 16 2 N -0.68 -26.75 6.31 -518.54 -3.27 -30.02 16 3 C 0.14 6.14 2.17 44.17 0.10 6.23 16 4 H 0.06 2.78 7.65 -2.39 -0.02 2.76 16 5 C 0.05 2.80 4.56 29.85 0.14 2.93 16 6 C -0.50 -29.52 8.84 25.60 0.23 -29.30 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 8 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 9 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16 10 Si 0.96 46.19 29.54 68.60 2.03 48.21 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 C -0.12 -4.38 4.65 -19.87 -0.09 -4.48 16 15 C -0.13 -4.16 9.67 22.27 0.22 -3.95 16 16 C -0.12 -3.25 9.67 22.27 0.22 -3.04 16 17 C -0.09 -2.20 4.78 -19.86 -0.09 -2.30 16 18 C -0.05 -0.96 3.09 -11.54 -0.04 -1.00 16 19 C -0.14 -2.19 9.01 71.98 0.65 -1.54 16 20 C -0.14 -2.54 9.01 71.98 0.65 -1.89 16 21 C -0.11 -3.18 8.71 22.27 0.19 -2.98 16 22 C -0.13 -4.28 8.95 22.27 0.20 -4.08 16 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.02 0.59 7.93 -2.39 -0.02 0.57 16 25 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 26 H 0.34 12.29 6.77 -89.70 -0.61 11.68 16 27 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.12 3.76 7.99 -2.91 -0.02 3.73 16 31 H 0.14 3.00 7.95 -2.91 -0.02 2.98 16 32 H 0.09 1.40 7.88 -2.39 -0.02 1.38 16 33 H 0.05 0.88 7.39 -2.39 -0.02 0.87 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.99 7.39 -2.39 -0.02 0.97 16 39 H 0.14 3.15 7.10 -2.91 -0.02 3.13 16 40 H 0.11 3.90 6.91 -2.91 -0.02 3.88 16 Total: -1.00 -67.47 325.62 3.58 -63.90 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.39 Total: 19.48 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 4.16 Total: -42.81 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -2.99 Total: -88.78 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -67.47 3.58 -63.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259493411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.868 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds