Wall clock time and date at job start Mon Mar 30 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47212 * 2 1 4 4 C 1.50697 * 109.47093 * 119.99885 * 2 1 3 5 5 C 1.38241 * 119.99954 * 119.99984 * 4 2 1 6 6 C 1.38235 * 119.99909 * 180.02562 * 5 4 2 7 7 C 1.38229 * 120.00091 * 359.95600 * 6 5 4 8 8 C 1.50705 * 120.00117 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.46785 * 12.53445 * 8 7 6 10 10 C 1.50704 * 109.46775 * 252.53984 * 8 7 6 11 11 H 1.07998 * 120.00199 * 355.30150 * 10 8 7 12 12 C 1.37879 * 120.00090 * 175.29808 * 10 8 7 13 13 N 1.31515 * 119.99732 * 4.65303 * 12 10 8 14 14 Si 1.86799 * 120.00171 * 184.64917 * 12 10 8 15 15 H 1.48500 * 109.47087 * 60.00366 * 14 12 10 16 16 H 1.48500 * 109.46934 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46909 * 300.00314 * 14 12 10 18 18 N 1.46896 * 109.47242 * 132.53895 * 8 7 6 19 19 C 1.46894 * 111.00396 * 326.42689 * 18 8 7 20 20 C 1.46897 * 110.99798 * 90.38359 * 18 8 7 21 21 C 1.38238 * 120.00218 * 0.27574 * 7 6 5 22 22 C 1.38230 * 120.00136 * 299.98021 * 4 2 1 23 23 H 1.08992 * 109.47502 * 299.99967 * 1 2 3 24 24 H 1.09002 * 109.46657 * 60.00074 * 1 2 3 25 25 H 1.09004 * 109.46879 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47365 * 240.00247 * 2 1 3 27 27 H 1.08993 * 109.47132 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47002 * 300.00307 * 3 2 1 29 29 H 1.09005 * 109.46754 * 59.99873 * 3 2 1 30 30 H 1.08001 * 120.00038 * 359.97438 * 5 4 2 31 31 H 1.07999 * 119.99772 * 179.97438 * 6 5 4 32 32 H 0.97000 * 120.00280 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.47393 * 182.74021 * 19 18 8 34 34 H 1.09007 * 109.47058 * 62.74164 * 19 18 8 35 35 H 1.09001 * 109.47050 * 302.74269 * 19 18 8 36 36 H 1.09002 * 109.47648 * 303.18558 * 20 18 8 37 37 H 1.09003 * 109.47431 * 63.18978 * 20 18 8 38 38 H 1.09007 * 109.47152 * 183.18804 * 20 18 8 39 39 H 1.07997 * 120.00221 * 179.72497 * 21 7 6 40 40 H 1.07999 * 120.00047 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8271 -1.8343 1.1036 6 6 3.2874 -2.4863 2.2323 7 6 2.9538 -2.0138 3.4878 8 6 3.4561 -2.7242 4.7183 9 1 4.2320 -3.4357 4.4357 10 6 2.3158 -3.4589 5.3748 11 1 1.3126 -3.3547 4.9885 12 6 2.5532 -4.2641 6.4686 13 7 3.7570 -4.3197 6.9952 14 14 1.1649 -5.2758 7.2025 15 1 0.6379 -6.2109 6.1763 16 1 1.6760 -6.0497 8.3622 17 1 0.0772 -4.3706 7.6526 18 7 4.0116 -1.7416 5.6585 19 6 4.6414 -0.6247 4.9419 20 6 2.9793 -1.2576 6.5849 21 6 2.1551 -0.8926 3.6147 22 6 1.6987 -0.2379 2.4859 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.0877 -2.2036 0.1227 31 1 3.9080 -3.3646 2.1332 32 1 3.9240 -4.8859 7.7649 33 1 5.0867 0.0632 5.6606 34 1 3.8884 -0.0992 4.3544 35 1 5.4163 -1.0093 4.2788 36 1 2.1502 -0.8357 6.0168 37 1 2.6184 -2.0874 7.1926 38 1 3.4034 -0.4903 7.2327 39 1 1.8908 -0.5261 4.5955 40 1 1.0778 0.6402 2.5850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259583068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:49 Heat of formation + Delta-G solvation = 30.820600 kcal Electronic energy + Delta-G solvation = -18529.061589 eV Core-core repulsion = 15922.832635 eV Total energy + Delta-G solvation = -2606.228955 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42260 -36.91609 -34.43512 -32.31025 -30.28154 -29.74425 -27.11679 -27.07401 -26.05075 -23.71702 -22.69729 -21.70313 -19.90134 -19.26314 -16.37537 -16.05081 -15.11953 -14.69620 -14.41891 -13.89413 -13.73898 -13.50939 -13.35989 -13.26852 -12.86450 -12.47270 -12.19356 -11.85990 -11.82884 -11.39737 -11.23391 -11.04507 -10.96864 -10.80923 -10.73578 -10.48586 -10.38466 -10.21777 -9.92000 -9.72634 -9.20052 -8.37384 -8.21917 -7.68615 -6.68136 -5.98624 -4.10610 2.06902 2.07626 3.29967 3.35587 3.38631 4.34880 4.50105 4.91042 4.98775 5.17994 5.31807 5.53762 5.57448 5.63022 5.65284 5.72409 5.86820 5.87678 5.88349 6.00055 6.12869 6.20947 6.24926 6.30661 6.37882 6.47390 6.60738 6.66842 6.71567 6.79590 6.85707 7.14111 7.18010 7.28073 7.45718 7.69882 7.77246 7.84520 8.07065 8.57312 8.75256 9.03887 9.54095 11.04491 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028244 B = 0.006519 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.135622 B = 4293.917599 C = 4697.317805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.122 4.122 7 C -0.061 4.061 8 C 0.242 3.758 9 H 0.052 0.948 10 C -0.530 4.530 11 H 0.056 0.944 12 C 0.078 3.922 13 N -0.848 5.848 14 Si 0.883 3.117 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 N -0.510 5.510 19 C 0.012 3.988 20 C 0.050 3.950 21 C -0.119 4.119 22 C -0.123 4.123 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.260 0.740 33 H 0.042 0.958 34 H 0.024 0.976 35 H 0.049 0.951 36 H 0.010 0.990 37 H 0.086 0.914 38 H 0.023 0.977 39 H 0.126 0.874 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 8.227 -9.903 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.105 4.105 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.063 4.063 8 C 0.137 3.863 9 H 0.070 0.930 10 C -0.569 4.569 11 H 0.075 0.925 12 C -0.129 4.129 13 N -0.483 5.483 14 Si 0.711 3.289 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.232 5.232 19 C -0.137 4.137 20 C -0.098 4.098 21 C -0.137 4.137 22 C -0.141 4.141 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.143 0.857 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.437 7.901 -9.449 12.556 hybrid contribution -1.320 -0.209 -0.047 1.337 sum -3.757 7.692 -9.496 12.785 Atomic orbital electron populations 1.21842 0.94921 1.01858 1.01322 1.20019 0.95502 0.95660 0.95756 1.21841 1.01128 0.95584 1.01339 1.19563 1.00033 0.96852 0.94047 1.20886 0.99237 0.96065 0.97922 1.21048 1.01010 0.99822 0.92185 1.21269 0.93809 0.94135 0.97127 1.18557 0.94476 0.89289 0.83998 0.93005 1.20863 0.93313 1.28437 1.14242 0.92548 1.24968 0.95348 0.96008 0.96571 1.70126 1.19902 1.36653 1.21617 0.86809 0.82705 0.80694 0.78724 1.20186 1.21194 1.20205 1.62598 1.31444 1.11062 1.18094 1.22602 0.98616 0.94871 0.97617 1.22221 0.92587 0.99044 0.95909 1.21345 0.97615 0.96253 0.98442 1.20813 1.00993 1.00020 0.92240 0.92579 0.93018 0.92627 0.91162 0.92699 0.93011 0.92597 0.87375 0.86708 0.92996 0.93877 0.95804 0.93219 0.97221 0.89554 0.95786 0.85684 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.01 37.16 0.33 -1.30 16 2 C -0.05 -0.64 3.09 -91.77 -0.28 -0.92 16 3 C -0.14 -1.58 9.01 37.16 0.33 -1.25 16 4 C -0.10 -1.66 4.78 -104.63 -0.50 -2.16 16 5 C -0.12 -2.07 9.67 -39.58 -0.38 -2.45 16 6 C -0.12 -2.37 9.67 -39.59 -0.38 -2.76 16 7 C -0.06 -1.32 3.60 -104.62 -0.38 -1.69 16 8 C 0.24 5.99 2.46 -70.01 -0.17 5.81 16 9 H 0.05 1.42 7.93 -51.93 -0.41 1.00 16 10 C -0.53 -14.03 6.76 -34.44 -0.23 -14.26 16 11 H 0.06 1.52 7.75 -52.49 -0.41 1.12 16 12 C 0.08 2.07 3.93 -17.82 -0.07 2.00 16 13 N -0.85 -23.68 12.53 55.43 0.69 -22.99 16 14 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 N -0.51 -12.12 4.71 -246.00 -1.16 -13.28 16 19 C 0.01 0.24 8.61 60.06 0.52 0.76 16 20 C 0.05 1.15 8.31 60.06 0.50 1.65 16 21 C -0.12 -2.35 6.74 -39.58 -0.27 -2.62 16 22 C -0.12 -2.09 8.71 -39.58 -0.34 -2.43 16 23 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 30 H 0.11 1.55 7.95 -52.49 -0.42 1.14 16 31 H 0.11 2.16 7.99 -52.49 -0.42 1.74 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.04 0.81 8.13 -51.93 -0.42 0.39 16 34 H 0.02 0.47 4.80 -51.92 -0.25 0.22 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.01 0.21 4.91 -51.93 -0.25 -0.04 16 37 H 0.09 2.20 5.45 -51.93 -0.28 1.91 16 38 H 0.02 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.13 2.55 4.60 -52.49 -0.24 2.31 16 40 H 0.11 1.60 7.10 -52.49 -0.37 1.23 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -27.65 308.82 -8.48 -36.13 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.32 Total: 1.46 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -1.33 Total: -21.64 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.46 Total: -36.26 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.65 -8.48 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.952 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds