Wall clock time and date at job start Mon Mar 30 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47256 * 2 1 4 4 C 1.53000 * 109.47326 * 239.99978 * 2 1 3 5 5 C 1.50701 * 109.47330 * 119.99781 * 2 1 3 6 6 C 1.35085 * 125.85864 * 239.95147 * 5 2 1 7 7 C 1.40247 * 107.26125 * 180.02562 * 6 5 2 8 8 C 1.35266 * 107.61485 * 0.07407 * 7 6 5 9 9 N 1.35826 * 108.18834 * 359.89288 * 8 7 6 10 10 H 0.96999 * 125.67545 * 180.12330 * 9 8 7 11 11 C 1.50873 * 124.00199 * 179.79201 * 8 7 6 12 12 C 1.53354 * 108.41546 * 343.36735 * 11 8 7 13 13 H 1.09002 * 109.46548 * 289.99370 * 12 11 8 14 14 C 1.50701 * 109.46338 * 170.01436 * 12 11 8 15 15 H 1.08002 * 120.00078 * 359.97438 * 14 12 11 16 16 C 1.37873 * 120.00020 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00277 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99854 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47263 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47374 * 119.99654 * 18 16 14 21 21 H 1.48502 * 109.47047 * 239.99623 * 18 16 14 22 22 C 1.53119 * 109.51002 * 50.00280 * 12 11 8 23 23 C 1.50751 * 128.03728 * 180.02562 * 7 6 5 24 24 H 1.08999 * 109.47354 * 300.00331 * 1 2 3 25 25 H 1.08997 * 109.46871 * 60.00562 * 1 2 3 26 26 H 1.09000 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47574 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46840 * 300.00180 * 3 2 1 29 29 H 1.08999 * 109.47210 * 59.99580 * 3 2 1 30 30 H 1.09000 * 109.46680 * 299.99677 * 4 2 1 31 31 H 1.08991 * 109.46912 * 59.99883 * 4 2 1 32 32 H 1.08998 * 109.47193 * 180.02562 * 4 2 1 33 33 H 1.07998 * 126.37264 * 0.06178 * 6 5 2 34 34 H 1.08997 * 109.66317 * 223.64588 * 11 8 7 35 35 H 1.09001 * 109.68270 * 103.10287 * 11 8 7 36 36 H 0.97001 * 120.00320 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47035 * 49.86947 * 22 12 11 38 38 H 1.08998 * 109.47469 * 169.87103 * 22 12 11 39 39 H 1.09005 * 109.67844 * 43.85722 * 23 7 6 40 40 H 1.08995 * 109.68548 * 283.30795 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 2.8130 -0.1713 2.1921 7 6 3.0455 -1.1706 3.1482 8 6 2.4009 -2.2870 2.7385 9 7 1.7773 -2.0096 1.5642 10 1 1.2398 -2.6310 1.0486 11 6 2.4093 -3.5920 3.4956 12 6 3.5583 -3.5558 4.5106 13 1 4.5108 -3.6031 3.9829 14 6 3.4419 -4.7340 5.4430 15 1 2.6312 -5.4378 5.3253 16 6 4.3704 -4.9135 6.4464 17 7 5.3579 -4.0568 6.5895 18 14 4.2265 -6.3743 7.6017 19 1 3.0370 -7.1828 7.2317 20 1 5.4478 -7.2123 7.4947 21 1 4.0798 -5.8890 8.9975 22 6 3.4864 -2.2569 5.3183 23 6 3.8564 -1.0733 4.4154 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1391 32 1 3.1300 -0.7216 -1.2490 33 1 3.1879 0.8412 2.2199 34 1 2.5594 -4.4182 2.8007 35 1 1.4615 -3.7191 4.0186 36 1 6.0113 -4.1832 7.2951 37 1 2.4742 -2.1215 5.6993 38 1 4.1850 -2.3091 6.1533 39 1 3.6290 -0.1373 4.9257 40 1 4.9188 -1.1122 4.1752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259716398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:51 Heat of formation + Delta-G solvation = 6.989697 kcal Electronic energy + Delta-G solvation = -18236.311792 eV Core-core repulsion = 15629.049452 eV Total energy + Delta-G solvation = -2607.262340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00241 -36.92709 -35.16760 -32.24277 -31.12672 -28.50690 -27.58093 -27.31768 -26.91980 -24.48607 -22.23265 -21.03492 -20.00306 -18.62914 -17.49505 -16.62439 -15.89738 -14.55081 -14.50571 -14.13414 -13.95090 -13.71130 -12.99808 -12.80052 -12.63447 -12.37631 -12.30878 -12.18830 -11.83434 -11.73804 -11.57671 -11.13138 -11.02390 -10.92968 -10.80496 -10.63014 -10.54426 -10.20656 -9.75222 -9.53700 -9.15551 -8.64746 -8.24799 -7.98865 -7.01954 -5.93546 -4.00746 2.82895 3.32122 3.40231 3.43537 3.64636 3.78531 4.47337 4.74608 4.84947 4.98027 5.35775 5.36857 5.51010 5.55801 5.68923 5.79254 5.82579 5.85433 5.95569 6.03233 6.04109 6.11340 6.24838 6.26919 6.35425 6.52400 6.54237 6.68862 6.84750 6.88520 6.96830 7.15325 7.37255 7.57347 7.75154 7.80680 7.95808 8.08384 8.18693 8.24573 8.51933 9.03377 9.63457 11.11542 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049603 B = 0.004944 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.344044 B = 5661.578134 C = 5959.907258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.006 3.994 3 C -0.134 4.134 4 C -0.140 4.140 5 C 0.001 3.999 6 C -0.186 4.186 7 C -0.160 4.160 8 C 0.030 3.970 9 N -0.554 5.554 10 H 0.402 0.598 11 C -0.041 4.041 12 C 0.058 3.942 13 H 0.029 0.971 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.887 5.887 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.109 4.109 23 C -0.047 4.047 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.259 0.741 37 H 0.029 0.971 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 8.167 -12.383 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.005 3.995 3 C -0.191 4.191 4 C -0.198 4.198 5 C -0.110 4.110 6 C -0.212 4.212 7 C -0.165 4.165 8 C -0.083 4.083 9 N -0.148 5.148 10 H 0.237 0.763 11 C -0.079 4.079 12 C 0.039 3.961 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.147 4.147 23 C -0.085 4.085 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.073 8.100 -12.344 16.371 hybrid contribution -0.299 -1.071 0.375 1.173 sum -7.373 7.030 -11.969 15.717 Atomic orbital electron populations 1.21894 0.94512 1.01502 1.01828 1.18979 0.94766 0.94859 0.90901 1.21788 1.01545 0.94161 1.01645 1.21896 1.01656 0.99739 0.96475 1.19958 1.06735 0.85165 0.99162 1.20364 1.05209 0.99337 0.96261 1.19503 1.04794 0.93052 0.99187 1.20795 1.00457 0.98792 0.88232 1.41603 1.42399 1.10723 1.20034 0.76285 1.20459 1.01677 0.89233 0.96565 1.18634 0.92182 0.93621 0.91631 0.95320 1.21241 1.10973 1.08991 1.13989 0.92733 1.24944 0.95278 0.96227 0.97475 1.69900 1.14213 1.35623 1.32843 0.86589 0.77879 0.82912 0.80907 1.19892 1.21106 1.21058 1.21668 1.00018 0.93202 0.99827 1.20129 0.97399 0.98840 0.92097 0.92243 0.92514 0.93230 0.92076 0.92640 0.92111 0.93219 0.92516 0.92189 0.85707 0.92996 0.92071 0.93096 0.95201 0.88727 0.93552 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.46 37.16 0.31 -1.14 16 2 C 0.01 0.07 0.99 -155.66 -0.15 -0.09 16 3 C -0.13 -1.40 7.37 37.16 0.27 -1.12 16 4 C -0.14 -1.47 8.46 37.16 0.31 -1.16 16 5 C 0.00 0.02 5.60 -81.61 -0.46 -0.44 16 6 C -0.19 -3.30 9.75 -39.95 -0.39 -3.69 16 7 C -0.16 -3.28 5.94 -104.90 -0.62 -3.90 16 8 C 0.03 0.59 7.05 -81.80 -0.58 0.01 16 9 N -0.55 -9.00 6.07 -5.31 -0.03 -9.03 16 10 H 0.40 5.42 8.96 -40.82 -0.37 5.05 16 11 C -0.04 -0.89 5.54 -27.62 -0.15 -1.04 16 12 C 0.06 1.48 2.07 -91.53 -0.19 1.29 16 13 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 14 C -0.51 -14.10 8.55 -34.44 -0.29 -14.39 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.71 5.26 -17.82 -0.09 1.62 16 17 N -0.89 -25.35 11.30 55.43 0.63 -24.72 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.11 -2.67 5.08 -26.46 -0.13 -2.81 16 23 C -0.05 -1.01 6.29 -27.65 -0.17 -1.19 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.65 7.93 -51.93 -0.41 0.24 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.12 1.99 7.28 -52.49 -0.38 1.61 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.03 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.09 2.56 5.87 -51.93 -0.30 2.25 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -29.15 314.40 -8.93 -38.08 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.91 Total: 2.77 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -2.34 Total: -28.04 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.59 Total: -33.75 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.15 -8.93 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.070 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds