Wall clock time and date at job start Mon Mar 30 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 C 1.53005 * 109.46654 * 240.00241 * 2 1 3 5 5 C 1.50692 * 109.47182 * 120.00545 * 2 1 3 6 6 C 1.35083 * 125.86081 * 0.02562 * 5 2 1 7 7 C 1.40239 * 107.26772 * 179.97438 * 6 5 2 8 8 C 1.35266 * 107.61380 * 359.91616 * 7 6 5 9 9 N 1.35828 * 108.18708 * 0.12086 * 8 7 6 10 10 H 0.96998 * 125.67197 * 179.88858 * 9 8 7 11 11 C 1.50898 * 124.00625 * 180.10774 * 8 7 6 12 12 C 1.53352 * 108.40480 * 16.66032 * 11 8 7 13 13 H 1.09000 * 109.46441 * 70.01360 * 12 11 8 14 14 C 1.50703 * 109.45880 * 189.98154 * 12 11 8 15 15 H 1.08002 * 119.99736 * 35.27284 * 14 12 11 16 16 C 1.37871 * 119.99830 * 215.26962 * 14 12 11 17 17 N 1.31519 * 120.00100 * 186.15628 * 16 14 12 18 18 Si 1.86799 * 120.00202 * 6.15755 * 16 14 12 19 19 H 1.48494 * 109.47299 * 86.52921 * 18 16 14 20 20 H 1.48504 * 109.47307 * 206.53232 * 18 16 14 21 21 H 1.48503 * 109.47019 * 326.52926 * 18 16 14 22 22 C 1.53112 * 109.51863 * 309.99492 * 12 11 8 23 23 C 1.50749 * 128.04549 * 179.87514 * 7 6 5 24 24 H 1.08998 * 109.47395 * 299.99768 * 1 2 3 25 25 H 1.09001 * 109.47205 * 59.99626 * 1 2 3 26 26 H 1.08995 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47237 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47387 * 300.00262 * 3 2 1 29 29 H 1.09007 * 109.47051 * 60.00418 * 3 2 1 30 30 H 1.08991 * 109.47107 * 300.00128 * 4 2 1 31 31 H 1.09001 * 109.47206 * 60.00133 * 4 2 1 32 32 H 1.08998 * 109.46492 * 179.97438 * 4 2 1 33 33 H 1.08005 * 126.36711 * 359.97438 * 6 5 2 34 34 H 1.08992 * 109.68344 * 256.92618 * 11 8 7 35 35 H 1.09000 * 109.67681 * 136.38221 * 11 8 7 36 36 H 0.96996 * 120.00003 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47346 * 190.12157 * 22 12 11 38 38 H 1.09003 * 109.47606 * 310.13325 * 22 12 11 39 39 H 1.09009 * 109.67805 * 76.79626 * 23 7 6 40 40 H 1.09003 * 109.71342 * 316.26845 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2303 6 6 1.2639 -1.2665 2.1922 7 6 2.1286 -1.8190 3.1481 8 6 3.3960 -1.5841 2.7380 9 7 3.3423 -0.9035 1.5638 10 1 4.1074 -0.6044 1.0479 11 6 4.6238 -2.0255 3.4960 12 6 4.2067 -3.0954 4.5124 13 1 3.9342 -4.0101 3.9858 14 6 5.3563 -3.3769 5.4454 15 1 6.0177 -2.5770 5.7439 16 6 5.5635 -4.6554 5.9179 17 7 6.4895 -4.8794 6.8245 18 14 4.5289 -6.0696 5.2703 19 1 5.1504 -6.6128 4.0359 20 1 4.4532 -7.1387 6.2982 21 1 3.1607 -5.5814 4.9622 22 6 3.0058 -2.5941 5.3192 23 6 1.7667 -2.5491 4.4164 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6765 -1.7488 -1.2494 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7208 -1.2496 33 1 0.1844 -1.2826 2.2199 34 1 5.0592 -1.1735 4.0178 35 1 5.3532 -2.4433 2.8020 36 1 6.6350 -5.7789 7.1572 37 1 2.8222 -3.2692 6.1549 38 1 3.2151 -1.5940 5.6990 39 1 1.4494 -3.5643 4.1777 40 1 0.9598 -2.0227 4.9263 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259716402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:53 Heat of formation + Delta-G solvation = 6.597259 kcal Electronic energy + Delta-G solvation = -18280.813163 eV Core-core repulsion = 15673.533805 eV Total energy + Delta-G solvation = -2607.279357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15113 -37.08000 -35.32029 -32.39251 -31.30572 -28.69711 -28.09906 -27.38025 -27.02530 -24.51739 -22.38041 -21.08990 -20.01927 -18.73235 -17.67533 -17.11762 -16.18816 -14.64197 -14.46437 -14.16968 -13.87431 -13.84579 -13.21973 -13.01684 -12.89261 -12.54379 -12.37903 -12.30444 -12.05108 -11.84184 -11.80499 -11.34478 -11.18352 -10.96756 -10.90843 -10.87124 -10.51044 -10.40589 -9.76495 -9.59984 -9.35339 -8.88459 -8.47372 -8.14530 -7.17207 -6.04855 -4.03408 2.70502 3.32895 3.41515 3.46023 3.48215 3.66853 4.46760 4.66365 4.77614 4.90610 5.26750 5.28495 5.45172 5.48986 5.62912 5.68189 5.73538 5.75878 5.84917 5.87930 5.90291 5.96747 6.03195 6.15931 6.19991 6.28378 6.35516 6.45271 6.53303 6.67567 6.71188 6.89564 7.00487 7.16434 7.41606 7.52826 7.61529 7.74411 7.84947 8.09415 8.55594 9.00282 9.59320 11.08426 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.005456 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.048424 B = 5130.290105 C = 5233.212777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.005 3.995 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.004 3.996 6 C -0.185 4.185 7 C -0.166 4.166 8 C 0.031 3.969 9 N -0.552 5.552 10 H 0.404 0.596 11 C -0.036 4.036 12 C 0.024 3.976 13 H 0.034 0.966 14 C -0.512 4.512 15 H 0.072 0.928 16 C 0.072 3.928 17 N -0.902 5.902 18 Si 0.874 3.126 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.260 1.260 22 C -0.108 4.108 23 C -0.051 4.051 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.263 0.737 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 9.300 -14.115 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.004 3.996 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.107 4.107 6 C -0.210 4.210 7 C -0.172 4.172 8 C -0.082 4.082 9 N -0.145 5.145 10 H 0.240 0.760 11 C -0.075 4.075 12 C 0.005 3.995 13 H 0.052 0.948 14 C -0.549 4.549 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.701 3.299 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.184 1.184 22 C -0.146 4.146 23 C -0.089 4.089 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.311 9.200 -14.071 19.722 hybrid contribution -0.059 -0.693 -0.529 0.874 sum -10.370 8.506 -14.600 19.826 Atomic orbital electron populations 1.21790 0.93347 1.02300 1.01726 1.18990 0.95857 0.93866 0.90842 1.21898 1.00662 0.95313 1.01902 1.21901 1.00677 1.00749 0.96485 1.19995 0.83256 1.08320 0.99152 1.20334 0.98150 1.06353 0.96174 1.19334 0.91905 1.06856 0.99090 1.20883 0.98006 1.01004 0.88291 1.41618 1.06800 1.46189 1.19942 0.76034 1.20407 0.91184 0.99523 0.96340 1.19127 0.94175 0.93372 0.92869 0.94766 1.21010 1.11608 0.95563 1.26768 0.90973 1.25038 0.94880 0.98686 0.94360 1.69918 1.33537 1.21553 1.28980 0.86889 0.82049 0.82205 0.78710 1.20384 1.21676 1.18450 1.21867 0.94235 1.00692 0.97819 1.20141 0.98362 0.97862 0.92497 0.92098 0.92555 0.92112 0.93161 0.92438 0.92215 0.92212 0.92438 0.93151 0.85596 0.91488 0.92235 0.92721 0.92594 0.93117 0.92583 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 7.37 37.16 0.27 -1.03 16 2 C 0.01 0.06 0.99 -155.67 -0.15 -0.10 16 3 C -0.14 -1.36 8.46 37.15 0.31 -1.05 16 4 C -0.14 -1.39 8.46 37.16 0.31 -1.08 16 5 C 0.00 0.06 5.60 -81.62 -0.46 -0.40 16 6 C -0.18 -3.03 9.75 -39.95 -0.39 -3.42 16 7 C -0.17 -3.14 5.94 -104.91 -0.62 -3.77 16 8 C 0.03 0.58 7.05 -81.78 -0.58 0.00 16 9 N -0.55 -8.43 6.07 -5.30 -0.03 -8.46 16 10 H 0.40 5.12 8.96 -40.82 -0.37 4.75 16 11 C -0.04 -0.74 5.59 -27.60 -0.15 -0.90 16 12 C 0.02 0.57 1.75 -91.53 -0.16 0.41 16 13 H 0.03 0.84 5.16 -51.93 -0.27 0.57 16 14 C -0.51 -14.20 8.82 -34.44 -0.30 -14.51 16 15 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 18 Si 0.87 21.71 27.08 -169.99 -4.60 17.11 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.22 6.69 56.52 0.38 -5.84 16 22 C -0.11 -2.35 5.20 -26.48 -0.14 -2.49 16 23 C -0.05 -0.98 6.29 -27.67 -0.17 -1.15 16 24 H 0.06 0.60 7.93 -51.93 -0.41 0.19 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.13 1.84 7.28 -52.48 -0.38 1.46 16 34 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.06 1.26 8.11 -51.93 -0.42 0.84 16 38 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 39 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -30.41 314.11 -8.37 -38.77 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.91 Total: 2.09 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -2.33 Total: -27.51 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.74 Total: -35.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.60 Total: 17.11 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.41 -8.37 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.371 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds