Wall clock time and date at job start Mon Mar 30 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 C 1.53005 * 109.46654 * 240.00241 * 2 1 3 5 5 C 1.50692 * 109.47182 * 120.00545 * 2 1 3 6 6 C 1.35083 * 125.86081 * 0.02562 * 5 2 1 7 7 C 1.40239 * 107.26772 * 179.97438 * 6 5 2 8 8 C 1.35266 * 107.61380 * 359.91616 * 7 6 5 9 9 N 1.35828 * 108.18708 * 0.12086 * 8 7 6 10 10 H 0.96998 * 125.67197 * 179.88858 * 9 8 7 11 11 C 1.50898 * 124.00625 * 180.10774 * 8 7 6 12 12 C 1.53352 * 108.40480 * 16.66032 * 11 8 7 13 13 H 1.09000 * 109.46441 * 70.01360 * 12 11 8 14 14 C 1.50703 * 109.45880 * 189.98154 * 12 11 8 15 15 H 1.08002 * 119.99736 * 35.27284 * 14 12 11 16 16 C 1.37871 * 119.99830 * 215.26962 * 14 12 11 17 17 N 1.31519 * 120.00100 * 186.15628 * 16 14 12 18 18 Si 1.86799 * 120.00202 * 6.15755 * 16 14 12 19 19 H 1.48494 * 109.47299 * 86.52921 * 18 16 14 20 20 H 1.48504 * 109.47307 * 206.53232 * 18 16 14 21 21 H 1.48503 * 109.47019 * 326.52926 * 18 16 14 22 22 C 1.53112 * 109.51863 * 309.99492 * 12 11 8 23 23 C 1.50749 * 128.04549 * 179.87514 * 7 6 5 24 24 H 1.08998 * 109.47395 * 299.99768 * 1 2 3 25 25 H 1.09001 * 109.47205 * 59.99626 * 1 2 3 26 26 H 1.08995 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47237 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47387 * 300.00262 * 3 2 1 29 29 H 1.09007 * 109.47051 * 60.00418 * 3 2 1 30 30 H 1.08991 * 109.47107 * 300.00128 * 4 2 1 31 31 H 1.09001 * 109.47206 * 60.00133 * 4 2 1 32 32 H 1.08998 * 109.46492 * 179.97438 * 4 2 1 33 33 H 1.08005 * 126.36711 * 359.97438 * 6 5 2 34 34 H 1.08992 * 109.68344 * 256.92618 * 11 8 7 35 35 H 1.09000 * 109.67681 * 136.38221 * 11 8 7 36 36 H 0.96996 * 120.00003 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47346 * 190.12157 * 22 12 11 38 38 H 1.09003 * 109.47606 * 310.13325 * 22 12 11 39 39 H 1.09009 * 109.67805 * 76.79626 * 23 7 6 40 40 H 1.09003 * 109.71342 * 316.26845 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2303 6 6 1.2639 -1.2665 2.1922 7 6 2.1286 -1.8190 3.1481 8 6 3.3960 -1.5841 2.7380 9 7 3.3423 -0.9035 1.5638 10 1 4.1074 -0.6044 1.0479 11 6 4.6238 -2.0255 3.4960 12 6 4.2067 -3.0954 4.5124 13 1 3.9342 -4.0101 3.9858 14 6 5.3563 -3.3769 5.4454 15 1 6.0177 -2.5770 5.7439 16 6 5.5635 -4.6554 5.9179 17 7 6.4895 -4.8794 6.8245 18 14 4.5289 -6.0696 5.2703 19 1 5.1504 -6.6128 4.0359 20 1 4.4532 -7.1387 6.2982 21 1 3.1607 -5.5814 4.9622 22 6 3.0058 -2.5941 5.3192 23 6 1.7667 -2.5491 4.4164 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6765 -1.7488 -1.2494 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7208 -1.2496 33 1 0.1844 -1.2826 2.2199 34 1 5.0592 -1.1735 4.0178 35 1 5.3532 -2.4433 2.8020 36 1 6.6350 -5.7789 7.1572 37 1 2.8222 -3.2692 6.1549 38 1 3.2151 -1.5940 5.6990 39 1 1.4494 -3.5643 4.1777 40 1 0.9598 -2.0227 4.9263 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259716402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:53 Heat of formation + Delta-G solvation = -9.962224 kcal Electronic energy + Delta-G solvation = -18281.531236 eV Core-core repulsion = 15673.533805 eV Total energy + Delta-G solvation = -2607.997430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.43458 -38.34664 -36.69076 -34.39568 -32.88016 -30.12043 -29.70079 -28.11970 -27.89550 -26.26405 -23.97152 -22.32076 -21.69688 -19.85585 -19.31658 -19.01061 -17.45870 -16.34316 -15.83331 -15.26225 -15.18311 -14.92646 -14.78831 -14.61192 -14.34103 -14.13574 -13.63084 -13.46590 -13.20873 -13.09549 -12.85807 -12.73027 -12.55318 -12.53066 -12.22832 -11.83632 -11.78899 -11.77989 -11.64321 -11.41131 -11.17258 -10.83629 -10.64594 -9.43966 -8.51772 -8.27988 -6.30631 1.35050 1.37515 1.42804 1.49647 2.12858 2.36798 2.45279 3.08685 3.75835 3.97140 4.11529 4.18622 4.23424 4.33381 4.43822 4.49263 4.70139 4.75398 4.77939 4.80853 4.86217 4.90215 4.95662 4.97621 5.04423 5.06077 5.09451 5.17235 5.23033 5.27537 5.40271 5.44316 5.46664 5.63059 5.63575 5.76462 5.79837 6.25820 6.34523 6.40989 6.75925 6.88885 7.35334 8.88908 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.005456 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.048424 B = 5130.290105 C = 5233.212777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.004 3.996 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.027 3.973 6 C -0.205 4.205 7 C -0.182 4.182 8 C 0.005 3.995 9 N -0.543 5.543 10 H 0.417 0.583 11 C -0.028 4.028 12 C 0.023 3.977 13 H 0.030 0.970 14 C -0.514 4.514 15 H 0.034 0.966 16 C 0.016 3.984 17 N -0.950 5.950 18 Si 0.937 3.063 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.245 1.245 22 C -0.104 4.104 23 C -0.044 4.044 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.143 0.857 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.265 0.735 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.745 9.955 -16.811 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.004 3.996 3 C -0.196 4.196 4 C -0.197 4.197 5 C -0.085 4.085 6 C -0.229 4.229 7 C -0.189 4.189 8 C -0.108 4.108 9 N -0.138 5.138 10 H 0.254 0.746 11 C -0.066 4.066 12 C 0.004 3.996 13 H 0.048 0.952 14 C -0.552 4.552 15 H 0.052 0.948 16 C -0.181 4.181 17 N -0.590 5.590 18 Si 0.761 3.239 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.168 1.168 22 C -0.142 4.142 23 C -0.082 4.082 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.160 0.840 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.531 9.875 -16.786 23.159 hybrid contribution 0.666 -0.778 0.293 1.065 sum -11.865 9.097 -16.494 22.262 Atomic orbital electron populations 1.21807 0.92182 1.02386 1.02748 1.19170 0.96774 0.94268 0.89434 1.21890 1.00679 0.94376 1.02678 1.21895 1.00687 1.00342 0.96757 1.20636 0.82411 1.06003 0.99472 1.20539 0.99027 1.07148 0.96198 1.19508 0.92649 1.07291 0.99424 1.20442 0.96914 1.03434 0.89985 1.41565 1.07856 1.45375 1.18965 0.74578 1.20093 0.92316 0.98293 0.95900 1.19073 0.93254 0.94373 0.92901 0.95212 1.21275 1.12161 0.94605 1.27125 0.94812 1.25858 0.96221 1.01502 0.94541 1.70057 1.35787 1.22319 1.30823 0.85881 0.81046 0.78736 0.78252 1.19495 1.21330 1.16838 1.21726 0.94962 0.99849 0.97698 1.20052 0.97307 0.98397 0.92455 0.92410 0.90295 0.92519 0.93202 0.90137 0.93039 0.93141 0.90120 0.93204 0.83970 0.92360 0.92100 0.92577 0.93938 0.93604 0.92597 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 7.37 71.98 0.53 -1.57 16 2 C 0.00 0.08 0.99 -52.93 -0.05 0.03 16 3 C -0.14 -2.21 8.46 71.98 0.61 -1.60 16 4 C -0.14 -2.26 8.46 71.98 0.61 -1.65 16 5 C 0.03 0.72 5.60 41.09 0.23 0.95 16 6 C -0.20 -6.22 9.75 22.03 0.21 -6.01 16 7 C -0.18 -6.62 5.94 -20.05 -0.12 -6.74 16 8 C 0.01 0.19 7.05 41.32 0.29 0.48 16 9 N -0.54 -15.56 6.07 -170.69 -1.04 -16.60 16 10 H 0.42 9.72 8.96 -92.71 -0.83 8.89 16 11 C -0.03 -1.15 5.59 30.03 0.17 -0.98 16 12 C 0.02 1.11 1.75 -11.38 -0.02 1.09 16 13 H 0.03 1.44 5.16 -2.39 -0.01 1.43 16 14 C -0.51 -29.51 8.82 25.60 0.23 -29.29 16 15 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 16 C 0.02 0.92 5.47 84.65 0.46 1.39 16 17 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 18 Si 0.94 45.09 27.08 68.60 1.86 46.94 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.24 -11.08 6.69 99.48 0.67 -10.42 16 22 C -0.10 -4.55 5.20 30.76 0.16 -4.39 16 23 C -0.04 -1.65 6.29 29.99 0.19 -1.46 16 24 H 0.06 0.95 7.93 -2.39 -0.02 0.93 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.95 7.92 -2.39 -0.02 0.93 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.14 3.77 7.28 -2.91 -0.02 3.75 16 34 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.04 1.92 8.11 -2.39 -0.02 1.90 16 38 H 0.05 2.00 8.12 -2.39 -0.02 1.98 16 39 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -66.59 314.11 4.75 -61.84 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.13 Total: 17.01 kcal Atomic # 6 Polarization: -53.22 SS G_CDS: 3.50 Total: -49.73 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -0.74 Total: -76.07 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.86 Total: 46.94 kcal Total: -66.59 4.75 -61.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.876 kcal (2) G-P(sol) polarization free energy of solvation -66.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds