Wall clock time and date at job start Mon Mar 30 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 C 1.50703 * 109.47098 * 180.02562 * 3 2 1 5 5 C 1.38231 * 120.00180 * 90.00111 * 4 3 2 6 6 C 1.38238 * 120.00156 * 180.02562 * 5 4 3 7 7 C 1.38236 * 119.99786 * 359.95072 * 6 5 4 8 8 C 1.50694 * 119.99776 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47512 * 16.61497 * 8 7 6 10 10 C 1.50702 * 109.47352 * 256.61486 * 8 7 6 11 11 H 1.08001 * 119.99486 * 354.24588 * 10 8 7 12 12 C 1.37881 * 120.00171 * 174.25119 * 10 8 7 13 13 N 1.31508 * 119.99896 * 3.17181 * 12 10 8 14 14 Si 1.86794 * 119.99895 * 183.17637 * 12 10 8 15 15 H 1.48497 * 109.47370 * 89.99627 * 14 12 10 16 16 H 1.48499 * 109.46913 * 209.99901 * 14 12 10 17 17 H 1.48505 * 109.47175 * 329.99632 * 14 12 10 18 18 N 1.46901 * 109.47242 * 136.61476 * 8 7 6 19 19 C 1.46904 * 110.99634 * 324.98379 * 18 8 7 20 20 C 1.46898 * 111.00143 * 88.93734 * 18 8 7 21 21 C 1.38227 * 119.99853 * 0.28147 * 7 6 5 22 22 C 1.38237 * 119.99732 * 269.97491 * 4 3 2 23 23 H 1.09004 * 109.47272 * 299.99840 * 1 2 3 24 24 H 1.09008 * 109.47520 * 59.99856 * 1 2 3 25 25 H 1.09007 * 109.47454 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47272 * 240.00159 * 2 1 3 27 27 H 1.08995 * 109.47294 * 120.00113 * 2 1 3 28 28 H 1.08996 * 109.47710 * 60.00265 * 3 2 1 29 29 H 1.09004 * 109.47117 * 299.99918 * 3 2 1 30 30 H 1.08005 * 120.00283 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.99814 * 179.97438 * 6 5 4 32 32 H 0.96997 * 120.00071 * 180.02562 * 13 12 10 33 33 H 1.08990 * 109.47323 * 62.53661 * 19 18 8 34 34 H 1.09001 * 109.46948 * 182.54333 * 19 18 8 35 35 H 1.09004 * 109.47162 * 302.53705 * 19 18 8 36 36 H 1.08992 * 109.46776 * 79.63404 * 20 18 8 37 37 H 1.08999 * 109.46817 * 199.63050 * 20 18 8 38 38 H 1.08999 * 109.46956 * 319.62754 * 20 18 8 39 39 H 1.08005 * 119.99956 * 179.72595 * 21 7 6 40 40 H 1.07991 * 120.00191 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2376 1.4427 -1.1980 6 6 5.6200 1.4422 -1.1986 7 6 6.3116 1.4425 -0.0017 8 6 7.8186 1.4425 -0.0023 9 1 8.1816 1.7361 -0.9873 10 6 8.3211 0.0604 0.3267 11 1 7.6238 -0.7149 0.6081 12 6 9.6710 -0.2143 0.2686 13 7 10.5257 0.7447 -0.0129 14 14 10.2858 -1.9487 0.5897 15 1 10.3301 -2.7029 -0.6887 16 1 11.6484 -1.8900 1.1773 17 1 9.3677 -2.6321 1.5360 18 7 8.3087 2.3941 1.0038 19 6 7.4252 3.5642 1.0961 20 6 8.4608 1.7447 2.3126 21 6 5.6209 1.4375 1.1956 22 6 4.2386 1.4429 1.1963 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9564 0.8899 29 1 1.6765 1.9563 -0.8900 30 1 3.6973 1.4425 -2.1332 31 1 6.1596 1.4420 -2.1342 32 1 11.4753 0.5514 -0.0541 33 1 6.4349 3.2469 1.4226 34 1 7.8352 4.2732 1.8153 35 1 7.3500 4.0407 0.1186 36 1 9.3924 1.1794 2.3315 37 1 8.4804 2.5037 3.0946 38 1 7.6223 1.0694 2.4827 39 1 6.1613 1.4332 2.1308 40 1 3.6990 1.4427 2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259763345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:54 Heat of formation + Delta-G solvation = 26.489782 kcal Electronic energy + Delta-G solvation = -18274.196881 eV Core-core repulsion = 15667.780128 eV Total energy + Delta-G solvation = -2606.416753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.34156 -36.70190 -34.46018 -32.31499 -30.82037 -30.17307 -27.84837 -26.59421 -25.19385 -23.58102 -22.05045 -21.78629 -20.47389 -19.40653 -16.36569 -15.79123 -15.38636 -14.83176 -14.47603 -14.23848 -13.71032 -13.51563 -13.39299 -13.34260 -12.83171 -12.34184 -12.19899 -11.95440 -11.80907 -11.42134 -11.23830 -10.98836 -10.85169 -10.81397 -10.75822 -10.51612 -10.42254 -10.36230 -9.92171 -9.73928 -9.20732 -8.42908 -8.22770 -7.67586 -6.67858 -5.98243 -4.10675 2.05093 2.06519 3.29046 3.36679 3.39712 4.34191 4.49259 4.99126 4.99219 5.14780 5.18497 5.38607 5.53960 5.61489 5.65454 5.73094 5.80000 5.85405 5.88220 5.99332 6.08145 6.18780 6.23266 6.31464 6.33962 6.44467 6.53655 6.65505 6.71204 6.76287 6.87241 7.12790 7.16254 7.25910 7.38976 7.68709 7.74697 7.83339 8.05935 8.57373 8.74316 9.03686 9.55489 11.05601 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.006121 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.164046 B = 4573.474071 C = 5099.612466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.072 4.072 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.063 4.063 8 C 0.243 3.757 9 H 0.054 0.946 10 C -0.528 4.528 11 H 0.056 0.944 12 C 0.080 3.920 13 N -0.849 5.849 14 Si 0.883 3.117 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.512 5.512 19 C 0.009 3.991 20 C 0.055 3.945 21 C -0.119 4.119 22 C -0.126 4.126 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.259 0.741 33 H 0.026 0.974 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.125 0.875 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.506 1.537 0.941 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.109 4.109 4 C -0.112 4.112 5 C -0.140 4.140 6 C -0.139 4.139 7 C -0.065 4.065 8 C 0.137 3.863 9 H 0.072 0.928 10 C -0.567 4.567 11 H 0.074 0.926 12 C -0.127 4.127 13 N -0.484 5.484 14 Si 0.711 3.289 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 N -0.235 5.235 19 C -0.140 4.140 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.144 4.144 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.142 0.858 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.813 1.768 0.766 12.957 hybrid contribution -0.357 -1.226 0.389 1.335 sum -13.170 0.543 1.155 13.232 Atomic orbital electron populations 1.21795 0.96178 1.01367 1.01545 1.21518 0.95033 0.96719 1.02446 1.20508 0.91831 0.96695 1.01903 1.19609 0.94678 1.03462 0.93404 1.20858 0.94291 1.02170 0.96706 1.21047 0.93510 1.01181 0.98170 1.21294 0.99941 0.93081 0.92177 1.18568 0.82230 0.91885 0.93603 0.92831 1.20874 0.92110 0.94376 1.49303 0.92577 1.24959 0.96882 0.96269 0.94596 1.70109 1.02038 1.30947 1.45310 0.86742 0.78212 0.85388 0.78574 1.20577 1.21154 1.19894 1.62708 1.46199 1.07455 1.07100 1.22686 0.95801 0.95196 1.00268 1.22100 1.01688 0.96298 0.89250 1.21282 0.93516 1.00034 0.98856 1.20877 0.94309 1.02495 0.96737 0.92910 0.92902 0.92936 0.91924 0.91955 0.91787 0.91759 0.87345 0.86643 0.93075 0.95612 0.93829 0.93193 0.91196 0.96061 0.95660 0.85787 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.15 0.37 -1.04 16 2 C -0.12 -1.38 5.92 -26.74 -0.16 -1.54 16 3 C -0.07 -0.89 5.34 -27.88 -0.15 -1.04 16 4 C -0.11 -1.77 5.13 -104.62 -0.54 -2.31 16 5 C -0.12 -2.05 9.70 -39.58 -0.38 -2.44 16 6 C -0.12 -2.35 9.67 -39.58 -0.38 -2.73 16 7 C -0.06 -1.35 3.72 -104.63 -0.39 -1.74 16 8 C 0.24 6.00 2.39 -70.02 -0.17 5.83 16 9 H 0.05 1.47 7.97 -51.93 -0.41 1.05 16 10 C -0.53 -14.03 6.58 -34.44 -0.23 -14.26 16 11 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 12 C 0.08 2.13 4.21 -17.82 -0.07 2.06 16 13 N -0.85 -23.82 12.78 55.43 0.71 -23.12 16 14 Si 0.88 20.78 29.54 -169.99 -5.02 15.76 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 N -0.51 -12.16 4.78 -246.01 -1.18 -13.34 16 19 C 0.01 0.19 8.56 60.07 0.51 0.70 16 20 C 0.05 1.24 8.07 60.06 0.48 1.72 16 21 C -0.12 -2.35 6.60 -39.59 -0.26 -2.61 16 22 C -0.13 -2.16 9.70 -39.58 -0.38 -2.54 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.12 2.18 8.01 -52.49 -0.42 1.76 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.03 0.51 4.59 -51.93 -0.24 0.27 16 34 H 0.04 0.81 8.03 -51.93 -0.42 0.40 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.75 6.63 -51.93 -0.34 1.41 16 37 H 0.02 0.42 7.80 -51.93 -0.41 0.01 16 38 H 0.03 0.56 4.77 -51.93 -0.25 0.31 16 39 H 0.12 2.50 4.57 -52.48 -0.24 2.26 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -27.88 313.49 -9.00 -36.89 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.49 Total: 1.02 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -1.75 Total: -21.94 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.47 Total: -36.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.88 -9.00 -36.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.376 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds