Wall clock time and date at job start Mon Mar 30 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 C 1.50703 * 109.47098 * 180.02562 * 3 2 1 5 5 C 1.38231 * 120.00180 * 90.00111 * 4 3 2 6 6 C 1.38238 * 120.00156 * 180.02562 * 5 4 3 7 7 C 1.38236 * 119.99786 * 359.95072 * 6 5 4 8 8 C 1.50694 * 119.99776 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47512 * 16.61497 * 8 7 6 10 10 C 1.50702 * 109.47352 * 256.61486 * 8 7 6 11 11 H 1.08001 * 119.99486 * 354.24588 * 10 8 7 12 12 C 1.37881 * 120.00171 * 174.25119 * 10 8 7 13 13 N 1.31508 * 119.99896 * 3.17181 * 12 10 8 14 14 Si 1.86794 * 119.99895 * 183.17637 * 12 10 8 15 15 H 1.48497 * 109.47370 * 89.99627 * 14 12 10 16 16 H 1.48499 * 109.46913 * 209.99901 * 14 12 10 17 17 H 1.48505 * 109.47175 * 329.99632 * 14 12 10 18 18 N 1.46901 * 109.47242 * 136.61476 * 8 7 6 19 19 C 1.46904 * 110.99634 * 324.98379 * 18 8 7 20 20 C 1.46898 * 111.00143 * 88.93734 * 18 8 7 21 21 C 1.38227 * 119.99853 * 0.28147 * 7 6 5 22 22 C 1.38237 * 119.99732 * 269.97491 * 4 3 2 23 23 H 1.09004 * 109.47272 * 299.99840 * 1 2 3 24 24 H 1.09008 * 109.47520 * 59.99856 * 1 2 3 25 25 H 1.09007 * 109.47454 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47272 * 240.00159 * 2 1 3 27 27 H 1.08995 * 109.47294 * 120.00113 * 2 1 3 28 28 H 1.08996 * 109.47710 * 60.00265 * 3 2 1 29 29 H 1.09004 * 109.47117 * 299.99918 * 3 2 1 30 30 H 1.08005 * 120.00283 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.99814 * 179.97438 * 6 5 4 32 32 H 0.96997 * 120.00071 * 180.02562 * 13 12 10 33 33 H 1.08990 * 109.47323 * 62.53661 * 19 18 8 34 34 H 1.09001 * 109.46948 * 182.54333 * 19 18 8 35 35 H 1.09004 * 109.47162 * 302.53705 * 19 18 8 36 36 H 1.08992 * 109.46776 * 79.63404 * 20 18 8 37 37 H 1.08999 * 109.46817 * 199.63050 * 20 18 8 38 38 H 1.08999 * 109.46956 * 319.62754 * 20 18 8 39 39 H 1.08005 * 119.99956 * 179.72595 * 21 7 6 40 40 H 1.07991 * 120.00191 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2376 1.4427 -1.1980 6 6 5.6200 1.4422 -1.1986 7 6 6.3116 1.4425 -0.0017 8 6 7.8186 1.4425 -0.0023 9 1 8.1816 1.7361 -0.9873 10 6 8.3211 0.0604 0.3267 11 1 7.6238 -0.7149 0.6081 12 6 9.6710 -0.2143 0.2686 13 7 10.5257 0.7447 -0.0129 14 14 10.2858 -1.9487 0.5897 15 1 10.3301 -2.7029 -0.6887 16 1 11.6484 -1.8900 1.1773 17 1 9.3677 -2.6321 1.5360 18 7 8.3087 2.3941 1.0038 19 6 7.4252 3.5642 1.0961 20 6 8.4608 1.7447 2.3126 21 6 5.6209 1.4375 1.1956 22 6 4.2386 1.4429 1.1963 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9564 0.8899 29 1 1.6765 1.9563 -0.8900 30 1 3.6973 1.4425 -2.1332 31 1 6.1596 1.4420 -2.1342 32 1 11.4753 0.5514 -0.0541 33 1 6.4349 3.2469 1.4226 34 1 7.8352 4.2732 1.8153 35 1 7.3500 4.0407 0.1186 36 1 9.3924 1.1794 2.3315 37 1 8.4804 2.5037 3.0946 38 1 7.6223 1.0694 2.4827 39 1 6.1613 1.4332 2.1308 40 1 3.6990 1.4427 2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:53 Heat of formation + Delta-G solvation = 11.497775 kcal Electronic energy + Delta-G solvation = -18274.846983 eV Core-core repulsion = 15667.780128 eV Total energy + Delta-G solvation = -2607.066855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85530 -38.25623 -35.59816 -34.33668 -32.18812 -31.58537 -29.49761 -28.25315 -26.63132 -25.39404 -23.46779 -22.96593 -21.81229 -21.03787 -18.38127 -17.35227 -16.72291 -16.42556 -16.02994 -15.55668 -15.30019 -15.12166 -14.86755 -14.48973 -14.24172 -13.84868 -13.72852 -13.49108 -13.00688 -12.85007 -12.80063 -12.63322 -12.45809 -12.23036 -12.14935 -12.01696 -11.93469 -11.63431 -11.55849 -11.38721 -11.08966 -10.50019 -9.66995 -9.16704 -8.47646 -8.04229 -6.22732 0.61455 0.62396 1.40039 1.42389 1.51030 2.42966 2.97351 3.17838 3.88446 3.93886 3.99677 4.22552 4.24727 4.28284 4.31701 4.56645 4.58067 4.64883 4.69807 4.80276 4.83668 4.89660 4.92859 5.06140 5.08024 5.09666 5.17941 5.19579 5.33038 5.36911 5.42514 5.49978 5.53087 5.65233 5.75610 5.82457 6.03226 6.06336 6.30135 6.64144 6.85617 7.10066 7.46838 8.99284 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.006121 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.164046 B = 4573.474071 C = 5099.612466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.069 4.069 4 C -0.100 4.100 5 C -0.119 4.119 6 C -0.137 4.137 7 C -0.090 4.090 8 C 0.249 3.751 9 H 0.011 0.989 10 C -0.535 4.535 11 H 0.044 0.956 12 C 0.039 3.961 13 N -0.881 5.881 14 Si 0.942 3.058 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.271 1.271 18 N -0.536 5.536 19 C 0.017 3.983 20 C 0.065 3.935 21 C -0.129 4.129 22 C -0.124 4.124 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.108 0.892 32 H 0.259 0.741 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.025 0.975 39 H 0.116 0.884 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 1.435 1.566 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.106 4.106 4 C -0.101 4.101 5 C -0.137 4.137 6 C -0.156 4.156 7 C -0.092 4.092 8 C 0.143 3.857 9 H 0.028 0.972 10 C -0.573 4.573 11 H 0.062 0.938 12 C -0.165 4.165 13 N -0.517 5.517 14 Si 0.767 3.233 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.196 1.196 18 N -0.259 5.259 19 C -0.132 4.132 20 C -0.083 4.083 21 C -0.147 4.147 22 C -0.142 4.142 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.134 0.866 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.508 1.665 1.393 15.659 hybrid contribution 0.378 -1.160 0.170 1.232 sum -15.129 0.505 1.563 15.218 Atomic orbital electron populations 1.21757 0.94260 1.02065 1.02392 1.21495 0.96698 0.95797 1.01658 1.20580 0.88841 0.97643 1.03517 1.20062 0.96856 1.00673 0.92467 1.21148 0.93084 1.00871 0.98550 1.21131 0.95028 1.02098 0.97332 1.20988 0.98086 0.96287 0.93816 1.18188 0.84684 0.91043 0.91764 0.97154 1.21030 0.92138 0.95191 1.48963 0.93786 1.25582 0.97011 0.99489 0.94388 1.70220 1.02111 1.32738 1.46614 0.85826 0.77703 0.81317 0.78408 1.20287 1.20722 1.19565 1.62470 1.47799 1.08307 1.07332 1.22641 0.95931 0.94052 1.00550 1.21943 1.00070 0.96741 0.89523 1.21219 0.94813 1.01027 0.97670 1.21175 0.93215 1.01294 0.98541 0.92082 0.92049 0.92407 0.92751 0.92835 0.90229 0.90170 0.84539 0.87347 0.93194 0.94525 0.92080 0.93711 0.94217 0.93469 0.95637 0.86613 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.48 16 2 C -0.12 -2.34 5.92 30.59 0.18 -2.16 16 3 C -0.07 -1.42 5.34 29.85 0.16 -1.26 16 4 C -0.10 -2.90 5.13 -19.86 -0.10 -3.01 16 5 C -0.12 -3.76 9.70 22.27 0.22 -3.54 16 6 C -0.14 -5.39 9.67 22.27 0.22 -5.18 16 7 C -0.09 -3.93 3.72 -19.87 -0.07 -4.00 16 8 C 0.25 12.82 2.39 43.42 0.10 12.93 16 9 H 0.01 0.62 7.97 -2.39 -0.02 0.60 16 10 C -0.53 -29.39 6.58 25.60 0.17 -29.23 16 11 H 0.04 2.47 7.75 -2.91 -0.02 2.44 16 12 C 0.04 2.15 4.21 84.66 0.36 2.50 16 13 N -0.88 -51.08 12.78 21.45 0.27 -50.80 16 14 Si 0.94 43.54 29.54 68.60 2.03 45.56 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 N -0.54 -26.06 4.78 -932.23 -4.46 -30.51 16 19 C 0.02 0.67 8.56 127.69 1.09 1.76 16 20 C 0.07 2.99 8.07 127.69 1.03 4.02 16 21 C -0.13 -5.03 6.60 22.27 0.15 -4.88 16 22 C -0.12 -3.95 9.70 22.27 0.22 -3.74 16 23 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 29 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 30 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.11 4.27 8.01 -2.91 -0.02 4.24 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.04 1.41 4.59 -2.39 -0.01 1.40 16 34 H 0.06 2.21 8.03 -2.39 -0.02 2.19 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 2.03 6.63 -2.39 -0.02 2.01 16 37 H 0.05 1.86 7.80 -2.39 -0.02 1.84 16 38 H 0.03 1.15 4.77 -2.39 -0.01 1.14 16 39 H 0.12 4.62 4.57 -2.91 -0.01 4.61 16 40 H 0.13 3.51 8.06 -2.92 -0.02 3.49 16 Total: -1.00 -61.45 313.49 3.26 -58.19 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.99 Total: 14.84 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 4.42 Total: -37.27 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -4.18 Total: -81.32 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -61.45 3.26 -58.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.689 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds