Wall clock time and date at job start Mon Mar 30 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47264 * 2 1 4 4 C 1.50704 * 109.47306 * 180.02562 * 3 2 1 5 5 C 1.38237 * 119.99703 * 89.99628 * 4 3 2 6 6 C 1.38236 * 119.99751 * 180.02562 * 5 4 3 7 7 C 1.38236 * 119.99823 * 359.95716 * 6 5 4 8 8 C 1.50704 * 119.99872 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47168 * 341.11750 * 8 7 6 10 10 C 1.50700 * 109.47194 * 101.12102 * 8 7 6 11 11 H 1.08009 * 119.99830 * 0.02562 * 10 8 7 12 12 C 1.37879 * 120.00260 * 179.97438 * 10 8 7 13 13 N 1.31519 * 119.99486 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 119.99961 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47067 * 60.00768 * 14 12 10 16 16 H 1.48501 * 109.47100 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47714 * 300.00298 * 14 12 10 18 18 N 1.46905 * 109.47254 * 221.12123 * 8 7 6 19 19 C 1.46901 * 110.99951 * 272.50434 * 18 8 7 20 20 C 1.46902 * 110.99872 * 36.45455 * 18 8 7 21 21 C 1.38239 * 120.00035 * 0.27584 * 7 6 5 22 22 C 1.38227 * 119.99902 * 359.51679 * 21 7 6 23 23 H 1.09005 * 109.47084 * 300.00208 * 1 2 3 24 24 H 1.09000 * 109.47399 * 59.99422 * 1 2 3 25 25 H 1.08992 * 109.47119 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46804 * 240.00262 * 2 1 3 27 27 H 1.09003 * 109.47293 * 120.00049 * 2 1 3 28 28 H 1.08995 * 109.47082 * 59.99843 * 3 2 1 29 29 H 1.09003 * 109.47005 * 300.00225 * 3 2 1 30 30 H 1.07995 * 120.00252 * 359.97438 * 5 4 3 31 31 H 1.07997 * 120.00342 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99090 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.47434 * 160.29488 * 19 18 8 34 34 H 1.09007 * 109.47310 * 40.30035 * 19 18 8 35 35 H 1.08998 * 109.47090 * 280.30294 * 19 18 8 36 36 H 1.09002 * 109.47351 * 287.80000 * 20 18 8 37 37 H 1.08998 * 109.46960 * 47.79965 * 20 18 8 38 38 H 1.08993 * 109.46821 * 167.79908 * 20 18 8 39 39 H 1.08003 * 119.99572 * 179.72811 * 21 7 6 40 40 H 1.08003 * 120.00096 * 180.25604 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2377 1.4426 -1.1981 6 6 5.6201 1.4421 -1.1987 7 6 6.3117 1.4423 -0.0018 8 6 7.8187 1.4424 -0.0025 9 1 8.1817 1.1096 -0.9749 10 6 8.3212 2.8365 0.2711 11 1 7.6194 3.6420 0.4299 12 6 9.6768 3.0837 0.3196 13 7 10.5313 2.1028 0.1266 14 14 10.2995 4.8120 0.6579 15 1 9.8045 5.2660 1.9824 16 1 11.7845 4.8120 0.6574 17 1 9.8046 5.7320 -0.3975 18 7 8.3089 0.5317 1.0409 19 6 8.4284 1.2246 2.3307 20 6 7.4444 -0.6504 1.1565 21 6 5.6210 1.4374 1.1956 22 6 4.2387 1.4422 1.1962 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6973 1.4423 -2.1332 31 1 6.1597 1.4417 -2.1342 32 1 11.4850 2.2768 0.1604 33 1 8.4472 0.4912 3.1368 34 1 7.5763 1.8909 2.4656 35 1 9.3503 1.8060 2.3467 36 1 6.4995 -0.3657 1.6193 37 1 7.2543 -1.0598 0.1644 38 1 7.9381 -1.4027 1.7715 39 1 6.1615 1.4331 2.1307 40 1 3.6991 1.4425 2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259763352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:56 Heat of formation + Delta-G solvation = 28.164181 kcal Electronic energy + Delta-G solvation = -18292.042497 eV Core-core repulsion = 15685.698351 eV Total energy + Delta-G solvation = -2606.344146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.33258 -36.72056 -34.47458 -32.29275 -30.83533 -30.15157 -27.85705 -26.56595 -25.22063 -23.56831 -22.04183 -21.78861 -20.47438 -19.42327 -16.36964 -15.79265 -15.39533 -14.84827 -14.45039 -14.24228 -13.74079 -13.47739 -13.40674 -13.30756 -12.78481 -12.55870 -12.05537 -11.83893 -11.78035 -11.54312 -11.22175 -11.01705 -10.93851 -10.76681 -10.73455 -10.49402 -10.42203 -10.35354 -9.89884 -9.76590 -9.23766 -8.38673 -8.22358 -7.68414 -6.65769 -5.96249 -4.09499 2.05529 2.06729 3.30920 3.36309 3.39361 4.34689 4.50128 4.97331 4.97719 5.13675 5.19344 5.38306 5.53287 5.61997 5.65248 5.71396 5.78839 5.84305 5.88144 5.98326 6.06888 6.20239 6.23728 6.31067 6.32414 6.42237 6.53550 6.65716 6.70232 6.76439 6.87550 7.13043 7.16226 7.26692 7.40356 7.69127 7.75346 7.83352 8.07345 8.56031 8.75172 9.05052 9.56661 11.06942 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033478 B = 0.005709 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.169481 B = 4903.414171 C = 5234.841457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.121 4.121 7 C -0.064 4.064 8 C 0.244 3.756 9 H 0.051 0.949 10 C -0.531 4.531 11 H 0.056 0.944 12 C 0.080 3.920 13 N -0.847 5.847 14 Si 0.883 3.117 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.509 5.509 19 C 0.053 3.947 20 C 0.013 3.987 21 C -0.122 4.122 22 C -0.125 4.125 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.259 0.741 33 H 0.020 0.980 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.126 0.874 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 -3.226 0.840 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.110 4.110 4 C -0.112 4.112 5 C -0.140 4.140 6 C -0.139 4.139 7 C -0.066 4.066 8 C 0.138 3.862 9 H 0.069 0.931 10 C -0.570 4.570 11 H 0.074 0.926 12 C -0.126 4.126 13 N -0.482 5.482 14 Si 0.710 3.290 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.231 5.231 19 C -0.095 4.095 20 C -0.135 4.135 21 C -0.139 4.139 22 C -0.143 4.143 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.144 0.856 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.766 -3.461 0.690 13.245 hybrid contribution -0.389 1.227 0.400 1.348 sum -13.154 -2.234 1.091 13.387 Atomic orbital electron populations 1.21796 0.96174 1.01348 1.01604 1.21516 0.95058 0.96734 1.02314 1.20513 0.91852 0.96652 1.01985 1.19607 0.94665 1.03489 0.93411 1.20858 0.94295 1.02164 0.96702 1.21046 0.93508 1.01191 0.98185 1.21335 0.99938 0.93128 0.92179 1.18558 0.82185 0.92479 0.92952 0.93108 1.20831 0.91536 0.92493 1.52104 0.92618 1.24951 0.96885 0.96186 0.94615 1.70121 1.01791 1.30463 1.45777 0.86820 0.77705 0.85460 0.79010 1.20197 1.21212 1.20219 1.62622 1.47177 1.06975 1.06330 1.22142 1.01754 0.96244 0.89372 1.22629 0.95534 0.95197 1.00170 1.21355 0.93536 1.00138 0.98920 1.20879 0.94326 1.02408 0.96725 0.92894 0.92874 0.92947 0.91982 0.92010 0.91755 0.91729 0.87352 0.86640 0.93067 0.96087 0.95630 0.90996 0.95976 0.93200 0.93830 0.85617 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 3 C -0.07 -0.90 5.34 -27.88 -0.15 -1.05 16 4 C -0.11 -1.78 5.13 -104.62 -0.54 -2.32 16 5 C -0.12 -2.06 9.70 -39.58 -0.38 -2.44 16 6 C -0.12 -2.36 9.67 -39.58 -0.38 -2.74 16 7 C -0.06 -1.37 3.76 -104.62 -0.39 -1.77 16 8 C 0.24 6.04 2.38 -70.01 -0.17 5.87 16 9 H 0.05 1.39 7.99 -51.93 -0.41 0.97 16 10 C -0.53 -14.15 6.86 -34.44 -0.24 -14.38 16 11 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 12 C 0.08 2.15 3.97 -17.82 -0.07 2.08 16 13 N -0.85 -23.71 12.33 55.43 0.68 -23.02 16 14 Si 0.88 20.77 29.54 -169.99 -5.02 15.75 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 N -0.51 -12.11 4.56 -246.00 -1.12 -13.23 16 19 C 0.05 1.20 7.92 60.07 0.48 1.68 16 20 C 0.01 0.27 8.40 60.07 0.50 0.78 16 21 C -0.12 -2.41 6.69 -39.58 -0.26 -2.67 16 22 C -0.13 -2.15 9.70 -39.59 -0.38 -2.53 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.12 2.18 8.03 -52.49 -0.42 1.75 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.02 0.42 7.88 -51.93 -0.41 0.01 16 34 H 0.03 0.57 4.80 -51.93 -0.25 0.32 16 35 H 0.07 1.81 6.24 -51.93 -0.32 1.49 16 36 H 0.02 0.43 4.90 -51.93 -0.25 0.18 16 37 H 0.05 1.00 7.96 -51.93 -0.41 0.59 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.13 2.54 4.28 -52.48 -0.22 2.31 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 312.39 15.07 4.71 4.71 Total: -1.00 -27.84 312.39 -9.00 -36.84 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.47 Total: 0.93 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.78 Total: -21.97 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.44 Total: -36.25 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.84 -9.00 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.004 kcal (2) G-P(sol) polarization free energy of solvation -27.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds