Wall clock time and date at job start Mon Mar 30 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47264 * 2 1 4 4 C 1.50704 * 109.47306 * 180.02562 * 3 2 1 5 5 C 1.38237 * 119.99703 * 89.99628 * 4 3 2 6 6 C 1.38236 * 119.99751 * 180.02562 * 5 4 3 7 7 C 1.38236 * 119.99823 * 359.95716 * 6 5 4 8 8 C 1.50704 * 119.99872 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47168 * 341.11750 * 8 7 6 10 10 C 1.50700 * 109.47194 * 101.12102 * 8 7 6 11 11 H 1.08009 * 119.99830 * 0.02562 * 10 8 7 12 12 C 1.37879 * 120.00260 * 179.97438 * 10 8 7 13 13 N 1.31519 * 119.99486 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 119.99961 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47067 * 60.00768 * 14 12 10 16 16 H 1.48501 * 109.47100 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47714 * 300.00298 * 14 12 10 18 18 N 1.46905 * 109.47254 * 221.12123 * 8 7 6 19 19 C 1.46901 * 110.99951 * 272.50434 * 18 8 7 20 20 C 1.46902 * 110.99872 * 36.45455 * 18 8 7 21 21 C 1.38239 * 120.00035 * 0.27584 * 7 6 5 22 22 C 1.38227 * 119.99902 * 359.51679 * 21 7 6 23 23 H 1.09005 * 109.47084 * 300.00208 * 1 2 3 24 24 H 1.09000 * 109.47399 * 59.99422 * 1 2 3 25 25 H 1.08992 * 109.47119 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46804 * 240.00262 * 2 1 3 27 27 H 1.09003 * 109.47293 * 120.00049 * 2 1 3 28 28 H 1.08995 * 109.47082 * 59.99843 * 3 2 1 29 29 H 1.09003 * 109.47005 * 300.00225 * 3 2 1 30 30 H 1.07995 * 120.00252 * 359.97438 * 5 4 3 31 31 H 1.07997 * 120.00342 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99090 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.47434 * 160.29488 * 19 18 8 34 34 H 1.09007 * 109.47310 * 40.30035 * 19 18 8 35 35 H 1.08998 * 109.47090 * 280.30294 * 19 18 8 36 36 H 1.09002 * 109.47351 * 287.80000 * 20 18 8 37 37 H 1.08998 * 109.46960 * 47.79965 * 20 18 8 38 38 H 1.08993 * 109.46821 * 167.79908 * 20 18 8 39 39 H 1.08003 * 119.99572 * 179.72811 * 21 7 6 40 40 H 1.08003 * 120.00096 * 180.25604 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2377 1.4426 -1.1981 6 6 5.6201 1.4421 -1.1987 7 6 6.3117 1.4423 -0.0018 8 6 7.8187 1.4424 -0.0025 9 1 8.1817 1.1096 -0.9749 10 6 8.3212 2.8365 0.2711 11 1 7.6194 3.6420 0.4299 12 6 9.6768 3.0837 0.3196 13 7 10.5313 2.1028 0.1266 14 14 10.2995 4.8120 0.6579 15 1 9.8045 5.2660 1.9824 16 1 11.7845 4.8120 0.6574 17 1 9.8046 5.7320 -0.3975 18 7 8.3089 0.5317 1.0409 19 6 8.4284 1.2246 2.3307 20 6 7.4444 -0.6504 1.1565 21 6 5.6210 1.4374 1.1956 22 6 4.2387 1.4422 1.1962 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6973 1.4423 -2.1332 31 1 6.1597 1.4417 -2.1342 32 1 11.4850 2.2768 0.1604 33 1 8.4472 0.4912 3.1368 34 1 7.5763 1.8909 2.4656 35 1 9.3503 1.8060 2.3467 36 1 6.4995 -0.3657 1.6193 37 1 7.2543 -1.0598 0.1644 38 1 7.9381 -1.4027 1.7715 39 1 6.1615 1.4331 2.1307 40 1 3.6991 1.4425 2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:56 Heat of formation + Delta-G solvation = 13.402324 kcal Electronic energy + Delta-G solvation = -18292.682619 eV Core-core repulsion = 15685.698351 eV Total energy + Delta-G solvation = -2606.984268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84773 -38.27538 -35.59838 -34.31104 -32.20190 -31.56168 -29.49575 -28.24240 -26.64602 -25.38270 -23.45661 -22.95360 -21.81462 -21.05068 -18.38181 -17.35590 -16.72625 -16.42720 -16.01851 -15.53796 -15.29298 -15.14197 -14.85638 -14.45564 -14.15962 -14.00910 -13.69474 -13.33553 -13.04326 -12.84670 -12.80071 -12.69459 -12.47527 -12.21839 -12.13771 -12.02845 -11.91693 -11.60151 -11.54613 -11.38318 -11.14290 -10.45270 -9.66659 -9.17684 -8.45608 -8.02117 -6.21653 0.61884 0.62527 1.41989 1.43016 1.50228 2.43800 2.98591 3.18409 3.86500 3.93663 3.99772 4.21910 4.25183 4.28525 4.32992 4.56351 4.59276 4.65182 4.69253 4.80060 4.82491 4.88797 4.93135 5.06200 5.06949 5.09782 5.18276 5.19785 5.33649 5.37116 5.42723 5.50513 5.54839 5.65734 5.75840 5.82391 6.02746 6.07566 6.30353 6.62230 6.86776 7.11147 7.48131 9.00449 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033478 B = 0.005709 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.169481 B = 4903.414171 C = 5234.841457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.070 4.070 4 C -0.101 4.101 5 C -0.119 4.119 6 C -0.137 4.137 7 C -0.091 4.091 8 C 0.250 3.750 9 H 0.009 0.991 10 C -0.539 4.539 11 H 0.044 0.956 12 C 0.041 3.959 13 N -0.877 5.877 14 Si 0.940 3.060 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.275 1.275 18 N -0.532 5.532 19 C 0.063 3.937 20 C 0.021 3.979 21 C -0.132 4.132 22 C -0.124 4.124 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.109 0.891 32 H 0.259 0.741 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.118 0.882 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 -3.052 1.475 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.107 4.107 4 C -0.101 4.101 5 C -0.137 4.137 6 C -0.156 4.156 7 C -0.093 4.093 8 C 0.144 3.856 9 H 0.026 0.974 10 C -0.578 4.578 11 H 0.062 0.938 12 C -0.163 4.163 13 N -0.513 5.513 14 Si 0.766 3.234 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.201 1.201 18 N -0.255 5.255 19 C -0.085 4.085 20 C -0.127 4.127 21 C -0.150 4.150 22 C -0.142 4.142 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.398 -3.287 1.327 15.801 hybrid contribution 0.330 1.133 0.173 1.193 sum -15.068 -2.154 1.500 15.295 Atomic orbital electron populations 1.21762 0.94405 1.02110 1.02288 1.21483 0.96571 0.95532 1.01828 1.20587 0.88882 0.97890 1.03350 1.20058 0.96832 1.00699 0.92482 1.21145 0.93095 1.00889 0.98535 1.21131 0.95018 1.02096 0.97356 1.21027 0.98085 0.96331 0.93818 1.18182 0.84650 0.91513 0.91258 0.97366 1.21002 0.91621 0.93325 1.51854 0.93820 1.25560 0.96992 0.99370 0.94347 1.70235 1.01815 1.32255 1.46954 0.85914 0.77212 0.81416 0.78902 1.19620 1.20808 1.20068 1.62400 1.48752 1.07865 1.06498 1.21984 1.00203 0.96579 0.89714 1.22576 0.95757 0.94043 1.00311 1.21292 0.94824 1.01114 0.97744 1.21174 0.93242 1.01255 0.98521 0.92230 0.92194 0.92232 0.92525 0.92560 0.90452 0.90386 0.84557 0.87319 0.93234 0.93606 0.95605 0.93943 0.94740 0.93751 0.92298 0.86422 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.19 5.92 30.59 0.18 -2.00 16 3 C -0.07 -1.46 5.34 29.85 0.16 -1.30 16 4 C -0.10 -2.92 5.13 -19.86 -0.10 -3.02 16 5 C -0.12 -3.77 9.70 22.27 0.22 -3.55 16 6 C -0.14 -5.40 9.67 22.27 0.22 -5.18 16 7 C -0.09 -3.97 3.76 -19.86 -0.07 -4.04 16 8 C 0.25 12.88 2.38 43.42 0.10 12.98 16 9 H 0.01 0.49 7.99 -2.39 -0.02 0.48 16 10 C -0.54 -29.70 6.86 25.60 0.18 -29.52 16 11 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 12 C 0.04 2.26 3.97 84.65 0.34 2.60 16 13 N -0.88 -50.64 12.33 21.45 0.26 -50.38 16 14 Si 0.94 43.39 29.54 68.60 2.03 45.41 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 N -0.53 -25.92 4.56 -932.20 -4.26 -30.18 16 19 C 0.06 2.91 7.92 127.69 1.01 3.92 16 20 C 0.02 0.87 8.40 127.69 1.07 1.94 16 21 C -0.13 -5.13 6.69 22.27 0.15 -4.99 16 22 C -0.12 -3.95 9.70 22.27 0.22 -3.74 16 23 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 29 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 30 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.11 4.27 8.03 -2.91 -0.02 4.25 16 32 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.05 1.82 7.88 -2.39 -0.02 1.80 16 34 H 0.03 1.17 4.80 -2.38 -0.01 1.16 16 35 H 0.04 2.18 6.24 -2.39 -0.01 2.16 16 36 H 0.03 1.32 4.90 -2.39 -0.01 1.30 16 37 H 0.04 1.81 7.96 -2.39 -0.02 1.79 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.12 4.70 4.28 -2.91 -0.01 4.69 16 40 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -61.14 312.39 3.40 -57.74 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.99 Total: 14.73 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 4.37 Total: -37.33 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -3.99 Total: -80.56 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.14 3.40 -57.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.141 kcal (2) G-P(sol) polarization free energy of solvation -61.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds