Wall clock time and date at job start Mon Mar 30 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46904 * 2 1 4 4 C 1.53002 * 109.47293 * 120.00059 * 2 1 3 5 5 H 1.09002 * 109.47123 * 299.99970 * 4 2 1 6 6 C 1.52998 * 109.47151 * 180.02562 * 4 2 1 7 7 C 1.50698 * 109.47235 * 175.00255 * 6 4 2 8 8 C 1.38229 * 120.00318 * 89.99821 * 7 6 4 9 9 C 1.38234 * 120.00202 * 180.02562 * 8 7 6 10 10 C 1.38232 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.38235 * 120.00449 * 0.25787 * 10 9 8 12 12 C 1.38232 * 119.99578 * 270.01729 * 7 6 4 13 13 N 1.46500 * 109.47275 * 60.00160 * 4 2 1 14 14 C 1.46500 * 119.99933 * 59.99556 * 13 4 2 15 15 C 1.36940 * 119.99836 * 240.00536 * 13 4 2 16 16 H 1.07992 * 120.00267 * 19.80964 * 15 13 4 17 17 C 1.38815 * 119.99393 * 199.82073 * 15 13 4 18 18 N 1.31611 * 120.00415 * 15.09696 * 17 15 13 19 19 Si 1.86801 * 119.99469 * 195.10244 * 17 15 13 20 20 H 1.48497 * 109.47283 * 84.99871 * 19 17 15 21 21 H 1.48504 * 109.46857 * 204.99404 * 19 17 15 22 22 H 1.48501 * 109.47439 * 324.99118 * 19 17 15 23 23 H 1.08996 * 109.47041 * 299.99465 * 1 2 3 24 24 H 1.08992 * 109.47420 * 60.00253 * 1 2 3 25 25 H 1.09007 * 109.46740 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47011 * 240.00097 * 2 1 3 27 27 H 1.08997 * 109.46692 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.46875 * 300.00080 * 3 2 1 29 29 H 1.09002 * 109.47207 * 60.00217 * 3 2 1 30 30 H 1.09001 * 109.47445 * 54.99747 * 6 4 2 31 31 H 1.09005 * 109.46846 * 294.99904 * 6 4 2 32 32 H 1.08004 * 119.99996 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.00180 * 179.97438 * 9 8 7 34 34 H 1.08004 * 120.00004 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.00080 * 179.72225 * 11 10 9 36 36 H 1.07997 * 120.00110 * 0.02562 * 12 7 6 37 37 H 1.09003 * 109.47082 * 95.16999 * 14 13 4 38 38 H 1.09002 * 109.47256 * 215.16897 * 14 13 4 39 39 H 1.08994 * 109.47453 * 335.17440 * 14 13 4 40 40 H 0.97002 * 119.99915 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 6 4.0724 -1.3212 2.5372 8 6 4.3032 -2.6815 2.6217 9 6 4.7635 -3.2324 3.8030 10 6 4.9934 -2.4228 4.8996 11 6 4.7580 -1.0632 4.8167 12 6 4.3019 -0.5117 3.6339 13 7 1.5518 -2.1025 1.2492 14 6 1.9057 -3.0045 0.1504 15 6 0.7645 -2.5504 2.2763 16 1 0.2418 -1.8437 2.9037 17 6 0.6385 -3.9127 2.5109 18 7 1.4849 -4.7565 1.9598 19 14 -0.7327 -4.5484 3.6087 20 1 -1.9712 -4.7164 2.8069 21 1 -0.3366 -5.8573 4.1878 22 1 -0.9802 -3.5771 4.7044 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.9331 0.3032 1.1601 31 1 3.9337 -1.3099 0.4076 32 1 4.1232 -3.3140 1.7649 33 1 4.9435 -4.2952 3.8691 34 1 5.3527 -2.8533 5.8228 35 1 4.9333 -0.4315 5.6748 36 1 4.1208 0.5509 3.5681 37 1 2.7806 -3.5915 0.4297 38 1 1.0696 -3.6733 -0.0542 39 1 2.1301 -2.4199 -0.7417 40 1 1.3966 -5.7085 2.1235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259807687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:34 Heat of formation + Delta-G solvation = 34.422316 kcal Electronic energy + Delta-G solvation = -19011.433246 eV Core-core repulsion = 16405.360473 eV Total energy + Delta-G solvation = -2606.072772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.76187 -37.03360 -33.69998 -32.00117 -30.35942 -30.03997 -27.50960 -26.36948 -25.87975 -23.63561 -21.75539 -21.55475 -20.20982 -18.44052 -16.73639 -16.03239 -15.14781 -14.55446 -14.37375 -14.11524 -13.78850 -13.35390 -13.02608 -12.69643 -12.24876 -12.05612 -11.96531 -11.73455 -11.70597 -11.45616 -10.86906 -10.83846 -10.69307 -10.58002 -10.36566 -10.32222 -10.11517 -10.04834 -9.82944 -9.63417 -9.48763 -8.43120 -8.07497 -7.82969 -6.63326 -5.61488 -3.00962 2.16630 2.25856 3.44157 3.50844 3.51455 4.58532 4.60273 5.38964 5.40378 5.52247 5.56256 5.60018 5.66876 5.74635 5.84988 5.92545 6.07823 6.13469 6.23790 6.27381 6.33332 6.35536 6.40577 6.53167 6.61693 6.66407 6.74292 6.82003 6.89390 6.94361 7.09119 7.13119 7.19799 7.35606 7.47398 7.56398 7.77248 7.89242 7.93494 8.49437 9.35696 9.99903 10.48091 11.43457 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.012738 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.096878 B = 2197.605536 C = 3595.892026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.145 4.145 4 C 0.188 3.812 5 H 0.060 0.940 6 C -0.099 4.099 7 C -0.057 4.057 8 C -0.062 4.062 9 C -0.116 4.116 10 C -0.138 4.138 11 C -0.135 4.135 12 C -0.129 4.129 13 N -0.585 5.585 14 C 0.163 3.837 15 C -0.238 4.238 16 H 0.063 0.937 17 C 0.005 3.995 18 N -0.904 5.904 19 Si 0.894 3.106 20 H -0.291 1.291 21 H -0.294 1.294 22 H -0.283 1.283 23 H 0.043 0.957 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.028 0.972 38 H 0.040 0.960 39 H -0.004 1.004 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 7.939 -1.125 9.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.080 3.920 5 H 0.078 0.922 6 C -0.138 4.138 7 C -0.057 4.057 8 C -0.080 4.080 9 C -0.134 4.134 10 C -0.156 4.156 11 C -0.153 4.153 12 C -0.147 4.147 13 N -0.306 5.306 14 C 0.018 3.982 15 C -0.368 4.368 16 H 0.081 0.919 17 C -0.193 4.193 18 N -0.550 5.550 19 Si 0.725 3.275 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.209 1.209 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.023 7.729 -1.102 9.283 hybrid contribution -0.866 -0.585 0.792 1.311 sum 4.158 7.144 -0.310 8.272 Atomic orbital electron populations 1.21636 0.95310 1.02629 0.99305 1.21595 0.96253 0.94809 1.00418 1.21892 1.00632 0.96986 1.00748 1.20381 0.89632 0.86998 0.95026 0.92167 1.21301 0.99136 0.98894 0.94503 1.19714 0.96743 0.93865 0.95349 1.21088 0.94415 0.94226 0.98290 1.21029 0.99861 0.98977 0.93571 1.20919 1.02592 0.94000 0.98113 1.20845 1.02027 0.95101 0.97300 1.20851 1.01577 0.98892 0.93374 1.43849 1.57859 1.06373 1.22567 1.20776 0.99738 0.91304 0.86347 1.19101 1.18996 0.90494 1.08162 0.91886 1.24774 0.98490 0.96672 0.99360 1.70044 1.35466 1.01670 1.47792 0.86427 0.82529 0.78099 0.80439 1.21857 1.22043 1.20910 0.93782 0.94781 0.91207 0.91916 0.92857 0.93726 0.93202 0.92285 0.91922 0.85438 0.87216 0.87573 0.87512 0.87435 0.95387 0.94082 0.98528 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.04 37.16 0.34 -1.92 16 2 C -0.11 -1.86 2.36 -90.62 -0.21 -2.07 16 3 C -0.14 -2.00 8.85 37.16 0.33 -1.67 16 4 C 0.19 3.68 1.67 -67.93 -0.11 3.57 16 5 H 0.06 1.27 7.84 -51.93 -0.41 0.86 16 6 C -0.10 -1.78 4.56 -27.88 -0.13 -1.91 16 7 C -0.06 -1.11 4.95 -104.63 -0.52 -1.62 16 8 C -0.06 -1.31 9.31 -39.59 -0.37 -1.68 16 9 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 10 C -0.14 -2.47 10.05 -39.58 -0.40 -2.86 16 11 C -0.13 -2.32 10.05 -39.58 -0.40 -2.71 16 12 C -0.13 -2.31 9.70 -39.58 -0.38 -2.70 16 13 N -0.59 -13.56 1.43 -173.48 -0.25 -13.81 16 14 C 0.16 3.79 7.90 59.85 0.47 4.26 16 15 C -0.24 -6.27 9.62 -15.06 -0.14 -6.41 16 16 H 0.06 1.70 7.80 -52.49 -0.41 1.29 16 17 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 18 N -0.90 -25.02 10.64 55.49 0.59 -24.43 16 19 Si 0.89 22.06 29.58 -169.99 -5.03 17.03 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.39 7.60 -51.93 -0.39 0.99 16 26 H 0.06 1.09 6.66 -51.93 -0.35 0.74 16 27 H 0.05 0.69 6.32 -51.93 -0.33 0.36 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.92 6.12 -51.93 -0.32 0.60 16 31 H 0.06 1.15 7.45 -51.93 -0.39 0.76 16 32 H 0.13 2.92 6.22 -52.48 -0.33 2.59 16 33 H 0.11 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.03 0.70 5.59 -51.93 -0.29 0.41 16 38 H 0.04 1.05 7.18 -51.93 -0.37 0.68 16 39 H 0.00 -0.08 6.44 -51.93 -0.33 -0.41 16 40 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -27.43 314.47 -8.39 -35.83 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.43 Total: 1.02 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -2.01 Total: -20.38 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.34 Total: -38.24 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.43 -8.39 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.249 kcal (2) G-P(sol) polarization free energy of solvation -27.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds