Wall clock time and date at job start Mon Mar 30 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46904 * 2 1 4 4 C 1.53002 * 109.47293 * 120.00059 * 2 1 3 5 5 H 1.09002 * 109.47123 * 299.99970 * 4 2 1 6 6 C 1.52998 * 109.47151 * 180.02562 * 4 2 1 7 7 C 1.50698 * 109.47235 * 175.00255 * 6 4 2 8 8 C 1.38229 * 120.00318 * 89.99821 * 7 6 4 9 9 C 1.38234 * 120.00202 * 180.02562 * 8 7 6 10 10 C 1.38232 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.38235 * 120.00449 * 0.25787 * 10 9 8 12 12 C 1.38232 * 119.99578 * 270.01729 * 7 6 4 13 13 N 1.46500 * 109.47275 * 60.00160 * 4 2 1 14 14 C 1.46500 * 119.99933 * 59.99556 * 13 4 2 15 15 C 1.36940 * 119.99836 * 240.00536 * 13 4 2 16 16 H 1.07992 * 120.00267 * 19.80964 * 15 13 4 17 17 C 1.38815 * 119.99393 * 199.82073 * 15 13 4 18 18 N 1.31611 * 120.00415 * 15.09696 * 17 15 13 19 19 Si 1.86801 * 119.99469 * 195.10244 * 17 15 13 20 20 H 1.48497 * 109.47283 * 84.99871 * 19 17 15 21 21 H 1.48504 * 109.46857 * 204.99404 * 19 17 15 22 22 H 1.48501 * 109.47439 * 324.99118 * 19 17 15 23 23 H 1.08996 * 109.47041 * 299.99465 * 1 2 3 24 24 H 1.08992 * 109.47420 * 60.00253 * 1 2 3 25 25 H 1.09007 * 109.46740 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47011 * 240.00097 * 2 1 3 27 27 H 1.08997 * 109.46692 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.46875 * 300.00080 * 3 2 1 29 29 H 1.09002 * 109.47207 * 60.00217 * 3 2 1 30 30 H 1.09001 * 109.47445 * 54.99747 * 6 4 2 31 31 H 1.09005 * 109.46846 * 294.99904 * 6 4 2 32 32 H 1.08004 * 119.99996 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.00180 * 179.97438 * 9 8 7 34 34 H 1.08004 * 120.00004 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.00080 * 179.72225 * 11 10 9 36 36 H 1.07997 * 120.00110 * 0.02562 * 12 7 6 37 37 H 1.09003 * 109.47082 * 95.16999 * 14 13 4 38 38 H 1.09002 * 109.47256 * 215.16897 * 14 13 4 39 39 H 1.08994 * 109.47453 * 335.17440 * 14 13 4 40 40 H 0.97002 * 119.99915 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 6 4.0724 -1.3212 2.5372 8 6 4.3032 -2.6815 2.6217 9 6 4.7635 -3.2324 3.8030 10 6 4.9934 -2.4228 4.8996 11 6 4.7580 -1.0632 4.8167 12 6 4.3019 -0.5117 3.6339 13 7 1.5518 -2.1025 1.2492 14 6 1.9057 -3.0045 0.1504 15 6 0.7645 -2.5504 2.2763 16 1 0.2418 -1.8437 2.9037 17 6 0.6385 -3.9127 2.5109 18 7 1.4849 -4.7565 1.9598 19 14 -0.7327 -4.5484 3.6087 20 1 -1.9712 -4.7164 2.8069 21 1 -0.3366 -5.8573 4.1878 22 1 -0.9802 -3.5771 4.7044 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.9331 0.3032 1.1601 31 1 3.9337 -1.3099 0.4076 32 1 4.1232 -3.3140 1.7649 33 1 4.9435 -4.2952 3.8691 34 1 5.3527 -2.8533 5.8228 35 1 4.9333 -0.4315 5.6748 36 1 4.1208 0.5509 3.5681 37 1 2.7806 -3.5915 0.4297 38 1 1.0696 -3.6733 -0.0542 39 1 2.1301 -2.4199 -0.7417 40 1 1.3966 -5.7085 2.1235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259807687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:33 Heat of formation + Delta-G solvation = 23.002551 kcal Electronic energy + Delta-G solvation = -19011.928444 eV Core-core repulsion = 16405.360473 eV Total energy + Delta-G solvation = -2606.567971 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24670 -38.57394 -35.46781 -33.46208 -32.22713 -31.49817 -29.00914 -27.94470 -27.58626 -25.29164 -23.24666 -23.20830 -21.62984 -19.97839 -18.69703 -17.46490 -17.00662 -16.06279 -15.97666 -15.58316 -15.40231 -14.85017 -14.79126 -14.21121 -13.75816 -13.60116 -13.46599 -13.29988 -13.04365 -12.82695 -12.77963 -12.66389 -12.36864 -12.12845 -12.05839 -11.95132 -11.88321 -11.59624 -11.34759 -11.28045 -11.05884 -10.47545 -9.54552 -9.31059 -8.56777 -7.67612 -5.06717 0.71127 0.79988 1.44625 1.47012 1.52080 2.57625 3.13155 3.45482 3.76665 4.01990 4.19856 4.23654 4.31553 4.40874 4.47273 4.49695 4.63352 4.78992 4.85839 4.89006 4.91825 4.99290 5.02798 5.11478 5.16897 5.22121 5.32500 5.36182 5.41785 5.45947 5.52159 5.68697 5.70806 5.75305 5.77766 5.82508 5.95273 6.08878 6.41080 6.45634 7.31183 8.06009 8.48387 9.34043 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.012738 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.096878 B = 2197.605536 C = 3595.892026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.187 3.813 5 H 0.047 0.953 6 C -0.090 4.090 7 C -0.073 4.073 8 C -0.086 4.086 9 C -0.138 4.138 10 C -0.141 4.141 11 C -0.133 4.133 12 C -0.132 4.132 13 N -0.590 5.590 14 C 0.182 3.818 15 C -0.233 4.233 16 H 0.056 0.944 17 C -0.041 4.041 18 N -0.922 5.922 19 Si 0.941 3.059 20 H -0.292 1.292 21 H -0.301 1.301 22 H -0.280 1.280 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.022 0.978 40 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 10.669 -0.556 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.125 4.125 3 C -0.195 4.195 4 C 0.080 3.920 5 H 0.066 0.934 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.104 4.104 9 C -0.156 4.156 10 C -0.158 4.158 11 C -0.150 4.150 12 C -0.150 4.150 13 N -0.312 5.312 14 C 0.037 3.963 15 C -0.364 4.364 16 H 0.073 0.927 17 C -0.237 4.237 18 N -0.569 5.569 19 Si 0.772 3.228 20 H -0.220 1.220 21 H -0.228 1.228 22 H -0.205 1.205 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.025 0.975 38 H 0.028 0.972 39 H 0.040 0.960 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.437 10.496 -0.539 11.833 hybrid contribution -0.977 -1.372 0.629 1.798 sum 4.459 9.124 0.091 10.156 Atomic orbital electron populations 1.21577 0.95675 1.00676 1.00492 1.21515 0.95882 0.96743 0.98400 1.21822 1.01335 0.94374 1.01973 1.20540 0.90679 0.84819 0.95964 0.93441 1.21219 0.97573 1.00473 0.93672 1.19934 0.97211 0.93437 0.96747 1.20959 0.96500 0.95003 0.97940 1.21173 1.00844 0.99377 0.94235 1.21249 1.01846 0.94466 0.98284 1.21298 1.00388 0.95142 0.98204 1.21214 1.00684 1.00160 0.92933 1.43899 1.57811 1.07789 1.21698 1.20453 0.97428 0.91052 0.87357 1.19208 1.18724 0.90322 1.08128 0.92658 1.25285 1.00205 0.97132 1.01061 1.70189 1.36517 1.01113 1.49102 0.85668 0.80640 0.77179 0.79270 1.21966 1.22842 1.20514 0.93855 0.92315 0.94687 0.92362 0.91677 0.91860 0.92677 0.89037 0.92803 0.88550 0.87593 0.84919 0.83956 0.84643 0.97494 0.97229 0.95981 0.95085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.04 71.98 0.65 -3.50 16 2 C -0.11 -3.31 2.36 -10.79 -0.03 -3.33 16 3 C -0.14 -3.25 8.85 71.98 0.64 -2.61 16 4 C 0.19 7.09 1.67 44.99 0.08 7.17 16 5 H 0.05 1.92 7.84 -2.39 -0.02 1.90 16 6 C -0.09 -3.11 4.56 29.85 0.14 -2.97 16 7 C -0.07 -2.79 4.95 -19.87 -0.10 -2.89 16 8 C -0.09 -3.70 9.31 22.27 0.21 -3.49 16 9 C -0.14 -5.53 10.05 22.27 0.22 -5.31 16 10 C -0.14 -4.77 10.05 22.27 0.22 -4.55 16 11 C -0.13 -4.14 10.05 22.27 0.22 -3.92 16 12 C -0.13 -4.37 9.70 22.27 0.22 -4.16 16 13 N -0.59 -27.67 1.43 -702.78 -1.01 -28.68 16 14 C 0.18 8.72 7.90 127.77 1.01 9.73 16 15 C -0.23 -12.47 9.62 84.03 0.81 -11.66 16 16 H 0.06 3.01 7.80 -2.91 -0.02 2.99 16 17 C -0.04 -2.29 5.06 84.86 0.43 -1.86 16 18 N -0.92 -52.95 10.64 21.65 0.23 -52.72 16 19 Si 0.94 46.15 29.58 68.60 2.03 48.17 16 20 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 21 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.03 1.37 7.60 -2.38 -0.02 1.35 16 26 H 0.06 1.90 6.66 -2.39 -0.02 1.88 16 27 H 0.06 1.40 6.32 -2.39 -0.02 1.38 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 2.54 6.12 -2.39 -0.01 2.52 16 31 H 0.05 1.94 7.45 -2.38 -0.02 1.92 16 32 H 0.10 4.69 6.22 -2.91 -0.02 4.67 16 33 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 34 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.01 0.36 5.59 -2.39 -0.01 0.35 16 38 H 0.01 0.48 7.18 -2.39 -0.02 0.47 16 39 H 0.02 0.92 6.44 -2.39 -0.02 0.90 16 40 H 0.24 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -60.42 314.47 6.96 -53.46 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.99 Total: 13.12 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 4.72 Total: -33.36 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -0.78 Total: -81.40 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -60.42 6.96 -53.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.461 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds