Wall clock time and date at job start Mon Mar 30 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47425 * 2 1 4 4 C 1.53003 * 109.46919 * 119.99898 * 2 1 3 5 5 H 1.08999 * 109.47161 * 299.99669 * 4 2 1 6 6 C 1.53004 * 109.47321 * 60.00142 * 4 2 1 7 7 C 1.50696 * 109.47247 * 185.00078 * 6 4 2 8 8 C 1.38236 * 120.00246 * 89.99657 * 7 6 4 9 9 C 1.38230 * 120.00032 * 179.97438 * 8 7 6 10 10 C 1.38240 * 120.00208 * 359.97438 * 9 8 7 11 11 C 1.38244 * 119.99738 * 0.27522 * 10 9 8 12 12 C 1.38236 * 119.99618 * 269.97420 * 7 6 4 13 13 N 1.46504 * 109.47201 * 179.97438 * 4 2 1 14 14 C 1.46497 * 119.99955 * 300.00213 * 13 4 2 15 15 C 1.36937 * 119.99825 * 119.99892 * 13 4 2 16 16 H 1.07994 * 120.00110 * 23.08241 * 15 13 4 17 17 C 1.38813 * 119.99546 * 203.07745 * 15 13 4 18 18 N 1.31614 * 120.00318 * 13.63948 * 17 15 13 19 19 Si 1.86803 * 119.99648 * 193.63542 * 17 15 13 20 20 H 1.48498 * 109.47073 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46967 * 120.00309 * 19 17 15 22 22 H 1.48498 * 109.47392 * 239.99905 * 19 17 15 23 23 H 1.08999 * 109.46934 * 300.00294 * 1 2 3 24 24 H 1.08993 * 109.46537 * 60.00110 * 1 2 3 25 25 H 1.09003 * 109.46803 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46934 * 239.99706 * 2 1 3 27 27 H 1.09001 * 109.47034 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46782 * 300.00129 * 3 2 1 29 29 H 1.08999 * 109.47305 * 59.99933 * 3 2 1 30 30 H 1.09003 * 109.47275 * 64.99478 * 6 4 2 31 31 H 1.09005 * 109.46891 * 305.00304 * 6 4 2 32 32 H 1.07994 * 119.99565 * 359.97438 * 8 7 6 33 33 H 1.07996 * 119.99944 * 180.02562 * 9 8 7 34 34 H 1.08001 * 120.00431 * 180.02562 * 10 9 8 35 35 H 1.07999 * 119.99933 * 179.72730 * 11 10 9 36 36 H 1.07996 * 120.00402 * 0.02562 * 12 7 6 37 37 H 1.09005 * 109.47508 * 95.14408 * 14 13 4 38 38 H 1.08996 * 109.47302 * 215.14212 * 14 13 4 39 39 H 1.09000 * 109.47392 * 335.14314 * 14 13 4 40 40 H 0.97002 * 119.99942 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 6 1.9286 -2.8375 2.5370 8 6 1.0885 -2.7848 3.6336 9 6 1.4540 -3.4032 4.8146 10 6 2.6593 -4.0749 4.8990 11 6 3.5017 -4.1232 3.8039 12 6 3.1342 -3.5086 2.6215 13 7 3.5050 -0.7218 1.2490 14 6 4.2371 -1.3566 0.1503 15 6 4.1901 -0.1289 2.2759 16 1 3.7152 0.0028 3.2368 17 6 5.4950 0.3026 2.0815 18 7 5.9838 0.3928 0.8629 19 14 6.5573 0.7556 3.5498 20 1 5.7789 0.5683 4.8005 21 1 7.7586 -0.1170 3.5796 22 1 6.9793 2.1748 3.4366 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.9646 -2.7029 0.4075 31 1 0.4436 -2.1651 1.1597 32 1 0.1467 -2.2605 3.5675 33 1 0.7975 -3.3624 5.6711 34 1 2.9447 -4.5585 5.8215 35 1 4.4454 -4.6442 3.8712 36 1 3.7905 -3.5497 1.7649 37 1 4.4987 -0.6047 -0.5943 38 1 5.1464 -1.8164 0.5373 39 1 3.6109 -2.1210 -0.3098 40 1 6.8956 0.6948 0.7271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259807695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:36 Heat of formation + Delta-G solvation = 32.118261 kcal Electronic energy + Delta-G solvation = -18899.247982 eV Core-core repulsion = 16293.075298 eV Total energy + Delta-G solvation = -2606.172684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.93885 -37.06713 -33.64427 -32.14271 -30.46795 -30.22334 -27.53996 -26.28706 -25.89363 -23.70081 -21.98855 -21.57610 -20.31585 -18.43520 -16.72129 -16.22949 -15.24968 -14.72431 -14.40045 -13.99784 -13.88548 -13.41810 -13.12302 -12.87369 -12.39000 -12.14229 -12.03610 -11.70492 -11.62964 -11.50562 -10.85053 -10.77296 -10.75968 -10.63554 -10.38697 -10.34724 -10.17685 -10.00226 -9.88250 -9.66526 -9.48129 -8.47891 -8.33660 -8.03522 -6.61348 -5.62432 -3.05842 1.94119 1.99652 3.42137 3.50495 3.52869 4.36465 4.57613 5.31581 5.33923 5.43892 5.50364 5.54452 5.57394 5.64354 5.75853 5.91246 6.04842 6.06502 6.14383 6.20098 6.26564 6.32392 6.44758 6.50553 6.56405 6.62112 6.72393 6.75596 6.84770 6.92683 6.99895 7.06577 7.16701 7.32371 7.40068 7.43734 7.60640 7.82509 7.91951 8.50319 9.34736 9.98441 10.47915 11.41940 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.011536 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.840681 B = 2426.526668 C = 3762.885438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.133 4.133 4 C 0.189 3.811 5 H 0.061 0.939 6 C -0.103 4.103 7 C -0.050 4.050 8 C -0.127 4.127 9 C -0.128 4.128 10 C -0.137 4.137 11 C -0.121 4.121 12 C -0.084 4.084 13 N -0.584 5.584 14 C 0.163 3.837 15 C -0.234 4.234 16 H 0.063 0.937 17 C 0.001 3.999 18 N -0.908 5.908 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.293 1.293 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.029 0.971 38 H 0.037 0.963 39 H -0.003 1.003 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 -6.087 1.462 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.190 4.190 4 C 0.080 3.920 5 H 0.079 0.921 6 C -0.142 4.142 7 C -0.050 4.050 8 C -0.145 4.145 9 C -0.146 4.146 10 C -0.155 4.155 11 C -0.140 4.140 12 C -0.102 4.102 13 N -0.306 5.306 14 C 0.018 3.982 15 C -0.364 4.364 16 H 0.081 0.919 17 C -0.196 4.196 18 N -0.554 5.554 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.220 1.220 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.090 -6.035 1.421 11.003 hybrid contribution 0.832 0.398 0.825 1.237 sum -8.258 -5.637 2.246 10.248 Atomic orbital electron populations 1.21926 0.96953 1.00747 1.00738 1.21615 0.93523 0.97577 1.00089 1.21644 1.03844 0.94702 0.98792 1.20360 0.85411 0.90751 0.95474 0.92109 1.21314 0.99669 0.98946 0.94266 1.19778 0.94086 0.95523 0.95579 1.20929 0.99756 1.00583 0.93237 1.20933 0.97012 0.99244 0.97425 1.20948 0.95190 1.01180 0.98203 1.21069 0.98977 1.00316 0.93596 1.21000 0.95510 0.95822 0.97880 1.43816 0.98567 1.63762 1.24410 1.20736 0.93235 0.93654 0.90542 1.19140 0.95559 1.31724 0.90002 0.91916 1.24894 0.98880 1.00064 0.95773 1.70059 1.15413 1.51525 1.18394 0.86330 0.80794 0.77571 0.82822 1.20486 1.21891 1.22026 0.93268 0.93782 0.93088 0.92205 0.90000 0.95177 0.94079 0.91544 0.91797 0.86994 0.87142 0.87200 0.86954 0.86269 0.95227 0.94463 0.98490 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.85 37.16 0.33 -1.78 16 2 C -0.11 -1.92 2.37 -90.62 -0.21 -2.13 16 3 C -0.13 -2.57 9.04 37.16 0.34 -2.23 16 4 C 0.19 3.71 1.67 -67.92 -0.11 3.59 16 5 H 0.06 1.28 7.87 -51.93 -0.41 0.87 16 6 C -0.10 -1.76 4.56 -27.88 -0.13 -1.89 16 7 C -0.05 -0.88 4.95 -104.63 -0.52 -1.40 16 8 C -0.13 -2.08 9.70 -39.58 -0.38 -2.46 16 9 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 10 C -0.14 -2.15 10.05 -39.58 -0.40 -2.54 16 11 C -0.12 -2.07 10.05 -39.58 -0.40 -2.46 16 12 C -0.08 -1.56 9.31 -39.58 -0.37 -1.93 16 13 N -0.58 -13.66 1.42 -173.48 -0.25 -13.91 16 14 C 0.16 3.83 7.39 59.85 0.44 4.27 16 15 C -0.23 -6.23 9.58 -15.06 -0.14 -6.38 16 16 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 17 C 0.00 0.04 5.09 -17.43 -0.09 -0.05 16 18 N -0.91 -25.90 10.75 55.49 0.60 -25.30 16 19 Si 0.89 22.18 29.58 -169.99 -5.03 17.15 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.67 6.32 -51.93 -0.33 0.34 16 26 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 27 H 0.08 1.94 7.60 -51.93 -0.39 1.54 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.15 6.44 -51.93 -0.33 0.82 16 31 H 0.06 0.95 6.12 -51.93 -0.32 0.63 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.12 2.30 7.43 -52.49 -0.39 1.91 16 37 H 0.03 0.77 7.33 -51.93 -0.38 0.38 16 38 H 0.04 0.95 7.36 -51.93 -0.38 0.57 16 39 H 0.00 -0.07 6.36 -51.93 -0.33 -0.40 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -28.15 317.15 -8.54 -36.69 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.59 Total: 0.34 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.04 Total: -19.75 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.35 Total: -39.21 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.15 -8.54 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.809 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds