Wall clock time and date at job start Mon Mar 30 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46899 * 2 1 4 4 H 1.09001 * 109.47109 * 304.99854 * 3 2 1 5 5 C 1.52991 * 109.47077 * 65.00074 * 3 2 1 6 6 C 1.50707 * 109.46867 * 184.99892 * 3 2 1 7 7 C 1.38240 * 119.99640 * 120.00080 * 6 3 2 8 8 C 1.38233 * 119.99655 * 179.97438 * 7 6 3 9 9 C 1.38232 * 120.00072 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.99632 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.47119 * 0.02562 * 10 9 8 12 12 C 1.50695 * 109.46671 * 239.99692 * 10 9 8 13 13 H 1.08004 * 120.00053 * 272.61843 * 12 10 9 14 14 C 1.37878 * 120.00060 * 92.62912 * 12 10 9 15 15 N 1.31514 * 119.99655 * 352.45309 * 14 12 10 16 16 Si 1.86801 * 120.00334 * 172.17581 * 14 12 10 17 17 H 1.48505 * 109.46826 * 59.99810 * 16 14 12 18 18 H 1.48490 * 109.47125 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47080 * 300.00023 * 16 14 12 20 20 C 1.53001 * 109.47022 * 120.00012 * 10 9 8 21 21 N 1.46897 * 109.47380 * 185.44010 * 20 10 9 22 22 C 1.38234 * 119.99956 * 0.27230 * 9 8 7 23 23 C 1.38231 * 120.00268 * 359.51962 * 22 9 8 24 24 H 1.08994 * 109.47119 * 60.00285 * 1 2 3 25 25 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47471 * 299.99767 * 1 2 3 27 27 H 1.08998 * 109.47471 * 240.00233 * 2 1 3 28 28 H 1.08998 * 109.47304 * 120.00162 * 2 1 3 29 29 H 1.08996 * 109.47771 * 59.99966 * 5 3 2 30 30 H 1.09004 * 109.47198 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.47383 * 299.99772 * 5 3 2 32 32 H 1.08006 * 119.99832 * 359.97438 * 7 6 3 33 33 H 1.08007 * 119.99422 * 179.97438 * 8 7 6 34 34 H 0.96998 * 120.00071 * 4.02012 * 15 14 12 35 35 H 1.08998 * 109.46951 * 305.44294 * 20 10 9 36 36 H 1.08998 * 109.47220 * 65.43888 * 20 10 9 37 37 H 1.00899 * 111.00380 * 183.89793 * 21 20 10 38 38 H 1.00906 * 110.99984 * 307.85173 * 21 20 10 39 39 H 1.07996 * 119.99350 * 179.72985 * 22 9 8 40 40 H 1.07991 * 120.00192 * 180.27114 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4444 -0.1238 7 6 4.1462 2.0737 -1.1961 8 6 5.5239 2.0758 -1.3094 9 6 6.2972 1.4491 -0.3502 10 6 7.7992 1.4519 -0.4735 11 1 8.0887 1.9920 -1.3748 12 6 8.2991 0.0326 -0.5553 13 1 8.5146 -0.5170 0.3492 14 6 8.4817 -0.5642 -1.7847 15 7 8.0815 0.0470 -2.8782 16 14 9.3043 -2.2376 -1.8977 17 1 8.5115 -3.2316 -1.1304 18 1 9.3797 -2.6569 -3.3202 19 1 10.6748 -2.1546 -1.3322 20 6 8.4101 2.1381 0.7500 21 7 9.8631 2.2574 0.5701 22 6 5.6927 0.8154 0.7193 23 6 4.3152 0.8170 0.8350 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.0698 1.5876 2.1491 30 1 1.9989 3.1541 1.3075 31 1 0.5489 2.1252 1.3969 32 1 3.5419 2.5637 -1.9453 33 1 5.9960 2.5671 -2.1474 34 1 7.7113 0.9420 -2.8258 35 1 7.9753 3.1311 0.8645 36 1 8.2018 1.5455 1.6407 37 1 10.2982 2.6498 1.3915 38 1 10.2728 1.3658 0.3348 39 1 6.2968 0.3221 1.4663 40 1 3.8431 0.3257 1.6728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:03 Heat of formation + Delta-G solvation = -13.222401 kcal Electronic energy + Delta-G solvation = -18006.515292 eV Core-core repulsion = 15398.376490 eV Total energy + Delta-G solvation = -2608.138802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.09265 -36.51525 -34.65265 -32.37049 -30.88993 -30.14817 -29.04074 -26.75425 -24.39763 -23.84036 -22.15020 -21.78501 -20.00164 -19.26795 -16.75992 -15.93424 -15.22218 -14.99699 -14.44875 -13.95079 -13.82949 -13.66766 -13.63592 -12.98967 -12.92074 -12.55454 -12.44574 -12.10872 -12.02132 -11.61807 -11.53707 -11.03061 -10.96543 -10.75418 -10.66564 -10.55505 -10.25191 -10.12540 -9.92946 -9.61940 -8.74410 -8.42228 -8.11467 -7.82284 -7.49670 -6.38847 -4.09719 2.21861 2.23400 3.41559 3.42359 3.61082 4.48521 4.60073 4.92618 4.99751 5.17664 5.28333 5.44566 5.55377 5.58327 5.61526 5.68531 5.69797 5.79794 5.96699 6.03999 6.05698 6.10187 6.12561 6.23290 6.29351 6.32997 6.45618 6.51572 6.53582 6.73606 6.85128 6.93704 7.21088 7.30666 7.37366 7.70782 7.87440 8.05002 8.14951 8.33251 8.38331 8.84058 9.62068 11.00202 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.006223 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.753569 B = 4498.191552 C = 5134.050728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.044 4.044 4 H 0.069 0.931 5 C -0.142 4.142 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.030 4.030 10 C 0.056 3.944 11 H 0.051 0.949 12 C -0.588 4.588 13 H 0.047 0.953 14 C 0.027 3.973 15 N -0.900 5.900 16 Si 1.064 2.936 17 H -0.290 1.290 18 H -0.283 1.283 19 H -0.287 1.287 20 C 0.084 3.916 21 N -0.847 5.847 22 C -0.110 4.110 23 C -0.120 4.120 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.273 0.727 35 H 0.042 0.958 36 H 0.010 0.990 37 H 0.319 0.681 38 H 0.351 0.649 39 H 0.111 0.889 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 2.343 6.938 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.063 4.063 4 H 0.088 0.912 5 C -0.199 4.199 6 C -0.111 4.111 7 C -0.137 4.137 8 C -0.145 4.145 9 C -0.031 4.031 10 C 0.037 3.963 11 H 0.069 0.931 12 C -0.625 4.625 13 H 0.065 0.935 14 C -0.179 4.179 15 N -0.535 5.535 16 Si 0.893 3.107 17 H -0.217 1.217 18 H -0.208 1.208 19 H -0.213 1.213 20 C -0.047 4.047 21 N -0.376 5.376 22 C -0.128 4.128 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.129 0.871 38 H 0.166 0.834 39 H 0.129 0.871 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.781 1.638 5.250 11.221 hybrid contribution -0.430 0.379 1.834 1.921 sum -10.212 2.017 7.084 12.591 Atomic orbital electron populations 1.21834 0.96268 1.01255 1.01584 1.21585 0.95062 0.96347 1.02404 1.20039 0.91999 0.96048 0.98187 0.91228 1.21873 1.00391 1.00500 0.97163 1.19506 0.94134 1.01206 0.96284 1.20858 0.94736 1.00646 0.97500 1.21029 0.93241 1.00836 0.99371 1.20748 0.98614 0.91665 0.92084 1.18110 0.86278 0.97153 0.94776 0.93091 1.21712 1.48119 0.98032 0.94679 0.93470 1.25770 0.95143 1.04683 0.92340 1.70770 1.37684 1.14813 1.30229 0.83605 0.76119 0.74868 0.76131 1.21656 1.20788 1.21335 1.21694 0.88152 0.97253 0.97571 1.58722 1.04679 1.33414 1.40807 1.20859 0.93576 0.99533 0.98836 1.20775 0.93833 1.00552 0.98657 0.92954 0.93052 0.92683 0.91845 0.91968 0.92682 0.92846 0.92815 0.87561 0.87149 0.91536 0.94003 0.97147 0.87139 0.83375 0.87121 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 37.16 0.36 -1.21 16 2 C -0.12 -1.49 5.14 -26.73 -0.14 -1.63 16 3 C -0.04 -0.60 2.56 -91.77 -0.24 -0.84 16 4 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 5 C -0.14 -1.69 8.76 37.15 0.33 -1.36 16 6 C -0.11 -1.92 4.78 -104.62 -0.50 -2.42 16 7 C -0.12 -2.23 9.67 -39.58 -0.38 -2.62 16 8 C -0.13 -2.71 9.64 -39.59 -0.38 -3.09 16 9 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 10 C 0.06 1.35 1.91 -92.92 -0.18 1.17 16 11 H 0.05 1.37 6.37 -51.93 -0.33 1.04 16 12 C -0.59 -15.51 6.91 -34.44 -0.24 -15.75 16 13 H 0.05 1.25 7.83 -52.48 -0.41 0.84 16 14 C 0.03 0.75 5.44 -17.82 -0.10 0.65 16 15 N -0.90 -26.52 13.62 55.43 0.75 -25.76 16 16 Si 1.06 24.68 29.91 -169.99 -5.08 19.59 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.08 1.78 5.98 -3.83 -0.02 1.76 16 21 N -0.85 -16.79 9.65 -10.37 -0.10 -16.89 16 22 C -0.11 -2.30 8.87 -39.59 -0.35 -2.65 16 23 C -0.12 -2.19 8.76 -39.59 -0.35 -2.54 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.80 7.57 -51.93 -0.39 0.41 16 29 H 0.05 0.66 7.39 -51.93 -0.38 0.27 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 32 H 0.11 1.74 7.95 -52.48 -0.42 1.32 16 33 H 0.11 2.36 7.95 -52.48 -0.42 1.94 16 34 H 0.27 8.00 6.64 -40.82 -0.27 7.73 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.01 0.22 7.60 -51.93 -0.39 -0.18 16 37 H 0.32 5.22 9.08 -39.29 -0.36 4.87 16 38 H 0.35 7.34 8.00 -39.29 -0.31 7.02 16 39 H 0.11 2.30 7.65 -52.49 -0.40 1.90 16 40 H 0.11 1.68 7.16 -52.49 -0.38 1.30 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -28.86 320.27 -8.76 -37.61 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.47 Total: 12.33 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: -2.69 Total: -31.72 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.65 Total: -42.65 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.86 -8.76 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.390 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds