Wall clock time and date at job start Mon Mar 30 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46899 * 2 1 4 4 H 1.09001 * 109.47109 * 304.99854 * 3 2 1 5 5 C 1.52991 * 109.47077 * 65.00074 * 3 2 1 6 6 C 1.50707 * 109.46867 * 184.99892 * 3 2 1 7 7 C 1.38240 * 119.99640 * 120.00080 * 6 3 2 8 8 C 1.38233 * 119.99655 * 179.97438 * 7 6 3 9 9 C 1.38232 * 120.00072 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.99632 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.47119 * 0.02562 * 10 9 8 12 12 C 1.50695 * 109.46671 * 239.99692 * 10 9 8 13 13 H 1.08004 * 120.00053 * 272.61843 * 12 10 9 14 14 C 1.37878 * 120.00060 * 92.62912 * 12 10 9 15 15 N 1.31514 * 119.99655 * 352.45309 * 14 12 10 16 16 Si 1.86801 * 120.00334 * 172.17581 * 14 12 10 17 17 H 1.48505 * 109.46826 * 59.99810 * 16 14 12 18 18 H 1.48490 * 109.47125 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47080 * 300.00023 * 16 14 12 20 20 C 1.53001 * 109.47022 * 120.00012 * 10 9 8 21 21 N 1.46897 * 109.47380 * 185.44010 * 20 10 9 22 22 C 1.38234 * 119.99956 * 0.27230 * 9 8 7 23 23 C 1.38231 * 120.00268 * 359.51962 * 22 9 8 24 24 H 1.08994 * 109.47119 * 60.00285 * 1 2 3 25 25 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47471 * 299.99767 * 1 2 3 27 27 H 1.08998 * 109.47471 * 240.00233 * 2 1 3 28 28 H 1.08998 * 109.47304 * 120.00162 * 2 1 3 29 29 H 1.08996 * 109.47771 * 59.99966 * 5 3 2 30 30 H 1.09004 * 109.47198 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.47383 * 299.99772 * 5 3 2 32 32 H 1.08006 * 119.99832 * 359.97438 * 7 6 3 33 33 H 1.08007 * 119.99422 * 179.97438 * 8 7 6 34 34 H 0.96998 * 120.00071 * 4.02012 * 15 14 12 35 35 H 1.08998 * 109.46951 * 305.44294 * 20 10 9 36 36 H 1.08998 * 109.47220 * 65.43888 * 20 10 9 37 37 H 1.00899 * 111.00380 * 183.89793 * 21 20 10 38 38 H 1.00906 * 110.99984 * 307.85173 * 21 20 10 39 39 H 1.07996 * 119.99350 * 179.72985 * 22 9 8 40 40 H 1.07991 * 120.00192 * 180.27114 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4444 -0.1238 7 6 4.1462 2.0737 -1.1961 8 6 5.5239 2.0758 -1.3094 9 6 6.2972 1.4491 -0.3502 10 6 7.7992 1.4519 -0.4735 11 1 8.0887 1.9920 -1.3748 12 6 8.2991 0.0326 -0.5553 13 1 8.5146 -0.5170 0.3492 14 6 8.4817 -0.5642 -1.7847 15 7 8.0815 0.0470 -2.8782 16 14 9.3043 -2.2376 -1.8977 17 1 8.5115 -3.2316 -1.1304 18 1 9.3797 -2.6569 -3.3202 19 1 10.6748 -2.1546 -1.3322 20 6 8.4101 2.1381 0.7500 21 7 9.8631 2.2574 0.5701 22 6 5.6927 0.8154 0.7193 23 6 4.3152 0.8170 0.8350 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.0698 1.5876 2.1491 30 1 1.9989 3.1541 1.3075 31 1 0.5489 2.1252 1.3969 32 1 3.5419 2.5637 -1.9453 33 1 5.9960 2.5671 -2.1474 34 1 7.7113 0.9420 -2.8258 35 1 7.9753 3.1311 0.8645 36 1 8.2018 1.5455 1.6407 37 1 10.2982 2.6498 1.3915 38 1 10.2728 1.3658 0.3348 39 1 6.2968 0.3221 1.4663 40 1 3.8431 0.3257 1.6728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259880274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:02 Heat of formation + Delta-G solvation = -29.276987 kcal Electronic energy + Delta-G solvation = -18007.211472 eV Core-core repulsion = 15398.376490 eV Total energy + Delta-G solvation = -2608.834981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59650 -37.97317 -36.14407 -34.30455 -32.32208 -31.69728 -30.28031 -28.29706 -26.07913 -25.25705 -23.69685 -23.23581 -21.66576 -20.57209 -18.72541 -17.41393 -16.85972 -16.30954 -15.83859 -15.63428 -15.46575 -15.12584 -14.79424 -14.75120 -14.25541 -14.05906 -13.87936 -13.68352 -13.10031 -12.90611 -12.77140 -12.67664 -12.52828 -12.21209 -12.07163 -11.98044 -11.66721 -11.57728 -11.35199 -11.25360 -10.71044 -10.45217 -9.68998 -9.47242 -9.13093 -8.53911 -6.25071 0.63561 0.67862 1.53110 1.60361 1.78141 2.58624 3.01480 3.25750 3.80103 3.87389 3.94293 4.17887 4.20947 4.24366 4.37591 4.49033 4.53508 4.59161 4.65528 4.67367 4.78012 4.82127 4.89329 4.99457 5.07237 5.15204 5.16790 5.19739 5.22162 5.36985 5.40037 5.44905 5.54904 5.75946 5.83345 5.90483 6.18386 6.23948 6.32718 6.39331 6.65402 6.83103 7.54114 8.84194 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.006223 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.753569 B = 4498.191552 C = 5134.050728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.043 4.043 4 H 0.078 0.922 5 C -0.139 4.139 6 C -0.101 4.101 7 C -0.123 4.123 8 C -0.147 4.147 9 C -0.059 4.059 10 C 0.057 3.943 11 H 0.013 0.987 12 C -0.582 4.582 13 H 0.045 0.955 14 C -0.025 4.025 15 N -0.934 5.934 16 Si 1.108 2.892 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.266 1.266 20 C 0.093 3.907 21 N -0.851 5.851 22 C -0.124 4.124 23 C -0.116 4.116 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.260 0.740 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.340 0.660 38 H 0.346 0.654 39 H 0.108 0.892 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.892 1.855 8.577 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.061 4.061 4 H 0.097 0.903 5 C -0.196 4.196 6 C -0.101 4.101 7 C -0.141 4.141 8 C -0.165 4.165 9 C -0.060 4.060 10 C 0.038 3.962 11 H 0.032 0.968 12 C -0.620 4.620 13 H 0.063 0.937 14 C -0.224 4.224 15 N -0.571 5.571 16 Si 0.931 3.069 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.191 1.191 20 C -0.038 4.038 21 N -0.382 5.382 22 C -0.142 4.142 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.126 0.874 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.634 1.173 6.928 13.591 hybrid contribution 0.075 0.607 1.376 1.506 sum -11.559 1.779 8.304 14.343 Atomic orbital electron populations 1.21795 0.94034 1.02106 1.02509 1.21567 0.97020 0.95280 1.01491 1.20124 0.89000 0.97162 0.99825 0.90327 1.21851 1.02029 0.99934 0.95760 1.19979 0.96473 0.98854 0.94760 1.21151 0.93717 1.00647 0.98598 1.21068 0.94729 1.01744 0.99000 1.20616 0.97664 0.93941 0.93744 1.18006 0.87970 0.95880 0.94353 0.96848 1.21925 1.46966 0.98831 0.94248 0.93674 1.27051 0.95426 1.07619 0.92342 1.70875 1.40246 1.14770 1.31205 0.83048 0.76515 0.71532 0.75832 1.20381 1.21654 1.19057 1.21544 0.88739 0.97281 0.96284 1.58654 1.04090 1.33094 1.42317 1.20917 0.94988 0.99862 0.98405 1.21065 0.92758 0.99959 0.99552 0.92491 0.92343 0.91277 0.93753 0.91975 0.92599 0.93189 0.90387 0.85229 0.88646 0.92919 0.93374 0.96573 0.84733 0.84028 0.87420 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.67 71.98 0.70 -1.82 16 2 C -0.12 -2.64 5.14 30.59 0.16 -2.49 16 3 C -0.04 -1.04 2.56 -11.54 -0.03 -1.07 16 4 H 0.08 1.80 7.88 -2.39 -0.02 1.78 16 5 C -0.14 -2.78 8.76 71.98 0.63 -2.15 16 6 C -0.10 -3.30 4.78 -19.86 -0.09 -3.40 16 7 C -0.12 -4.54 9.67 22.27 0.22 -4.33 16 8 C -0.15 -6.51 9.64 22.27 0.21 -6.30 16 9 C -0.06 -2.73 4.77 -19.87 -0.09 -2.82 16 10 C 0.06 2.86 1.91 -12.29 -0.02 2.83 16 11 H 0.01 0.76 6.37 -2.39 -0.02 0.74 16 12 C -0.58 -31.30 6.91 25.60 0.18 -31.12 16 13 H 0.04 2.40 7.83 -2.91 -0.02 2.37 16 14 C -0.02 -1.40 5.44 84.66 0.46 -0.94 16 15 N -0.93 -57.06 13.62 21.45 0.29 -56.77 16 16 Si 1.11 50.02 29.91 68.60 2.05 52.07 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 C 0.09 3.95 5.98 86.30 0.52 4.47 16 21 N -0.85 -33.65 9.65 -186.73 -1.80 -35.45 16 22 C -0.12 -5.15 8.87 22.27 0.20 -4.96 16 23 C -0.12 -4.02 8.76 22.27 0.20 -3.82 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.07 1.00 6.57 -2.39 -0.02 0.98 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.41 7.57 -2.39 -0.02 1.39 16 29 H 0.05 1.12 7.39 -2.39 -0.02 1.10 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 31 H 0.08 1.21 6.56 -2.39 -0.02 1.20 16 32 H 0.13 4.07 7.95 -2.91 -0.02 4.05 16 33 H 0.10 4.37 7.95 -2.91 -0.02 4.35 16 34 H 0.26 16.12 6.64 -92.71 -0.62 15.51 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.02 0.67 7.60 -2.39 -0.02 0.65 16 37 H 0.34 10.81 9.08 -89.69 -0.81 10.00 16 38 H 0.35 14.47 8.00 -89.69 -0.72 13.75 16 39 H 0.11 4.45 7.65 -2.91 -0.02 4.43 16 40 H 0.13 3.86 7.16 -2.92 -0.02 3.84 16 Total: -1.00 -63.55 320.27 3.41 -60.14 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.35 Total: 37.92 kcal Atomic # 6 Polarization: -61.13 SS G_CDS: 3.22 Total: -57.91 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -1.51 Total: -92.22 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Total: -63.55 3.41 -60.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.868 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds