Wall clock time and date at job start Mon Mar 30 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47302 * 2 1 4 4 H 1.09003 * 109.47099 * 54.99931 * 3 2 1 5 5 C 1.53006 * 109.47186 * 295.00088 * 3 2 1 6 6 C 1.50701 * 109.47222 * 174.99963 * 3 2 1 7 7 C 1.38238 * 119.99784 * 240.00046 * 6 3 2 8 8 C 1.38238 * 119.99852 * 179.97438 * 7 6 3 9 9 C 1.38236 * 119.99659 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99502 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47489 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.47085 * 120.00066 * 10 9 8 13 13 H 1.08000 * 120.00226 * 359.97438 * 12 10 9 14 14 C 1.37876 * 119.99741 * 180.02562 * 12 10 9 15 15 N 1.31511 * 120.00557 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99840 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47337 * 59.99624 * 16 14 12 18 18 H 1.48502 * 109.47220 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47168 * 299.99658 * 16 14 12 20 20 C 1.53000 * 109.47204 * 239.99702 * 10 9 8 21 21 N 1.46901 * 109.46769 * 64.99941 * 20 10 9 22 22 C 1.38230 * 120.00206 * 0.27279 * 9 8 7 23 23 C 1.38227 * 120.00144 * 59.97823 * 6 3 2 24 24 H 1.09000 * 109.46777 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47012 * 300.00143 * 1 2 3 26 26 H 1.09005 * 109.46422 * 59.99788 * 1 2 3 27 27 H 1.09003 * 109.46845 * 239.99863 * 2 1 3 28 28 H 1.08997 * 109.46611 * 119.99928 * 2 1 3 29 29 H 1.08994 * 109.47348 * 59.99916 * 5 3 2 30 30 H 1.09003 * 109.46934 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.46854 * 299.99744 * 5 3 2 32 32 H 1.07998 * 120.00150 * 359.97438 * 7 6 3 33 33 H 1.08003 * 120.00004 * 180.02562 * 8 7 6 34 34 H 0.96999 * 120.00539 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47398 * 185.00236 * 20 10 9 36 36 H 1.09001 * 109.47194 * 305.00417 * 20 10 9 37 37 H 1.00898 * 110.99877 * 56.04956 * 21 20 10 38 38 H 1.00908 * 110.99847 * 180.02562 * 21 20 10 39 39 H 1.08005 * 119.99999 * 179.73365 * 22 9 8 40 40 H 1.08005 * 119.99890 * 0.02562 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5420 1.4442 0.1238 7 6 4.1463 2.0735 1.1961 8 6 5.5240 2.0747 1.3100 9 6 6.2972 1.4461 0.3519 10 6 7.7991 1.4469 0.4764 11 1 8.0887 1.9874 1.3776 12 6 8.2970 0.0270 0.5597 13 1 7.5960 -0.7939 0.5263 14 6 9.6474 -0.2240 0.6796 15 7 10.5010 0.7755 0.7208 16 14 10.2646 -1.9841 0.7836 17 1 9.8704 -2.7203 -0.4444 18 1 11.7445 -1.9833 0.9062 19 1 9.6694 -2.6480 1.9712 20 6 8.4119 2.1312 -0.7472 21 7 8.0224 3.5476 -0.7623 22 6 5.6931 0.8213 -0.7230 23 6 4.3153 0.8162 -0.8345 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5491 2.1253 -1.3970 30 1 1.9983 3.1543 -1.3071 31 1 2.0700 1.5875 -2.1491 32 1 3.5422 2.5642 1.9448 33 1 5.9962 2.5660 2.1480 34 1 11.4511 0.5989 0.8048 35 1 9.4982 2.0536 -0.7009 36 1 8.0512 1.6455 -1.6538 37 1 8.2889 4.0051 0.0966 38 1 8.4147 4.0220 -1.5619 39 1 6.2975 0.3339 -1.4738 40 1 3.8431 0.3246 -1.6723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259882288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:05 Heat of formation + Delta-G solvation = -22.849815 kcal Electronic energy + Delta-G solvation = -17912.843684 eV Core-core repulsion = 15304.287406 eV Total energy + Delta-G solvation = -2608.556278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47854 -37.80948 -36.02052 -34.10516 -32.32103 -31.58945 -30.36237 -28.50786 -26.01887 -25.19526 -23.58193 -23.24821 -21.29478 -20.43095 -18.46485 -17.45026 -16.61499 -16.26979 -16.15768 -15.60740 -15.29156 -15.06132 -14.69504 -14.38670 -14.12965 -13.98545 -13.63910 -13.49323 -13.33083 -12.86858 -12.83136 -12.60642 -12.51217 -12.35896 -12.07408 -11.79099 -11.72773 -11.48610 -11.31716 -11.17206 -11.03247 -10.54236 -9.56392 -9.34985 -9.00648 -8.11631 -6.27077 0.75609 0.80261 1.40509 1.40842 1.48959 2.40528 3.10072 3.19111 3.88117 3.97982 4.06937 4.26068 4.28906 4.34843 4.48591 4.60788 4.64913 4.73982 4.74854 4.83022 4.90650 4.95944 5.08405 5.12959 5.20831 5.23916 5.26900 5.35800 5.43386 5.48967 5.51165 5.59697 5.68389 5.75709 5.92849 5.93640 6.13590 6.28152 6.44237 6.53889 6.72278 6.90866 7.40409 8.89508 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026842 B = 0.005626 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.895373 B = 4976.052631 C = 5599.566894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.042 4.042 4 H 0.081 0.919 5 C -0.140 4.140 6 C -0.101 4.101 7 C -0.120 4.120 8 C -0.140 4.140 9 C -0.039 4.039 10 C 0.085 3.915 11 H 0.000 1.000 12 C -0.524 4.524 13 H 0.049 0.951 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.274 1.274 20 C 0.080 3.920 21 N -0.847 5.847 22 C -0.126 4.126 23 C -0.116 4.116 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.262 0.738 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.333 0.667 38 H 0.334 0.666 39 H 0.100 0.900 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.755 1.833 -2.537 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.060 4.060 4 H 0.100 0.900 5 C -0.198 4.198 6 C -0.101 4.101 7 C -0.138 4.138 8 C -0.158 4.158 9 C -0.039 4.039 10 C 0.066 3.934 11 H 0.018 0.982 12 C -0.563 4.563 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.778 3.222 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.199 1.199 20 C -0.051 4.051 21 N -0.375 5.375 22 C -0.144 4.144 23 C -0.134 4.134 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.313 1.582 -2.590 16.593 hybrid contribution 2.224 -0.650 0.265 2.332 sum -14.089 0.932 -2.324 14.310 Atomic orbital electron populations 1.21803 0.94274 1.02017 1.02442 1.21567 0.96816 0.95322 1.01612 1.20112 0.89234 0.97101 0.99574 0.90022 1.21862 1.01876 0.99953 0.96065 1.19939 0.96241 0.98968 0.94932 1.21144 0.93780 1.00361 0.98533 1.21078 0.94444 1.01142 0.99181 1.20147 0.96359 0.93773 0.93580 1.17685 0.87733 0.94590 0.93373 0.98197 1.21358 0.92162 0.92372 1.50386 0.93244 1.25686 0.97014 1.00797 0.94590 1.69977 1.02529 1.32130 1.50762 0.85690 0.77080 0.80574 0.78828 1.19597 1.20710 1.19929 1.21685 0.98865 0.87047 0.97455 1.58891 1.67601 1.03695 1.07273 1.20916 0.94924 1.00391 0.98201 1.21004 0.92681 1.00260 0.99490 0.92408 0.92324 0.91629 0.92259 0.93151 0.90523 0.93329 0.92938 0.84791 0.87521 0.92896 0.94391 0.94592 0.85621 0.85424 0.88165 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.67 71.98 0.70 -1.65 16 2 C -0.12 -2.43 5.14 30.60 0.16 -2.27 16 3 C -0.04 -0.96 2.56 -11.54 -0.03 -0.99 16 4 H 0.08 1.70 7.88 -2.39 -0.02 1.68 16 5 C -0.14 -2.83 8.76 71.98 0.63 -2.20 16 6 C -0.10 -3.12 4.78 -19.87 -0.09 -3.22 16 7 C -0.12 -4.03 9.67 22.27 0.22 -3.81 16 8 C -0.14 -5.67 9.67 22.27 0.22 -5.46 16 9 C -0.04 -1.74 4.46 -19.87 -0.09 -1.83 16 10 C 0.09 4.36 2.09 -12.29 -0.03 4.33 16 11 H 0.00 -0.01 7.88 -2.39 -0.02 -0.02 16 12 C -0.52 -29.13 8.25 25.60 0.21 -28.92 16 13 H 0.05 2.77 7.61 -2.91 -0.02 2.75 16 14 C 0.02 1.00 5.29 84.65 0.45 1.44 16 15 N -0.91 -51.92 11.29 21.45 0.24 -51.68 16 16 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 C 0.08 3.87 5.91 86.30 0.51 4.38 16 21 N -0.85 -34.08 9.34 -186.71 -1.74 -35.83 16 22 C -0.13 -5.29 8.66 22.27 0.19 -5.10 16 23 C -0.12 -4.00 8.76 22.27 0.20 -3.81 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.91 6.57 -2.38 -0.02 0.90 16 27 H 0.06 1.28 7.57 -2.39 -0.02 1.26 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.20 6.56 -2.39 -0.02 1.18 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.09 7.39 -2.39 -0.02 1.07 16 32 H 0.13 3.65 7.95 -2.91 -0.02 3.63 16 33 H 0.11 4.23 7.95 -2.91 -0.02 4.20 16 34 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.04 2.04 5.95 -2.39 -0.01 2.03 16 36 H 0.04 1.75 7.21 -2.39 -0.02 1.73 16 37 H 0.33 13.11 8.99 -89.70 -0.81 12.30 16 38 H 0.33 11.67 9.08 -89.69 -0.81 10.85 16 39 H 0.10 4.38 7.53 -2.91 -0.02 4.36 16 40 H 0.13 3.75 7.16 -2.91 -0.02 3.73 16 Total: -1.00 -60.07 319.33 3.16 -56.90 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.60 Total: 34.06 kcal Atomic # 6 Polarization: -52.32 SS G_CDS: 3.23 Total: -49.09 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -1.50 Total: -87.50 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -60.07 3.16 -56.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259882288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.055 kcal (2) G-P(sol) polarization free energy of solvation -60.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds