Wall clock time and date at job start Mon Mar 30 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 H 1.09001 * 109.46772 * 55.00873 * 3 2 1 5 5 C 1.52997 * 109.47538 * 295.00292 * 3 2 1 6 6 C 1.50701 * 109.47162 * 175.00212 * 3 2 1 7 7 C 1.38240 * 120.00127 * 240.00719 * 6 3 2 8 8 C 1.38233 * 119.99655 * 179.97438 * 7 6 3 9 9 C 1.38234 * 120.00433 * 359.97438 * 8 7 6 10 10 C 1.50692 * 119.99934 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47719 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.46974 * 239.99444 * 10 9 8 13 13 H 1.07995 * 120.00642 * 272.62250 * 12 10 9 14 14 C 1.37878 * 119.99713 * 92.62763 * 12 10 9 15 15 N 1.31518 * 120.00273 * 352.45386 * 14 12 10 16 16 Si 1.86802 * 120.00028 * 172.18122 * 14 12 10 17 17 H 1.48500 * 109.47124 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00037 * 16 14 12 19 19 H 1.48506 * 109.47057 * 239.99702 * 16 14 12 20 20 C 1.53007 * 109.47376 * 120.00019 * 10 9 8 21 21 N 1.46897 * 109.47332 * 185.44109 * 20 10 9 22 22 C 1.38234 * 119.99595 * 0.27438 * 9 8 7 23 23 C 1.38230 * 119.99820 * 59.97871 * 6 3 2 24 24 H 1.09003 * 109.47505 * 59.99155 * 1 2 3 25 25 H 1.09003 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46687 * 299.99198 * 1 2 3 27 27 H 1.09003 * 109.46687 * 240.00802 * 2 1 3 28 28 H 1.08988 * 109.47586 * 120.00287 * 2 1 3 29 29 H 1.09006 * 109.46837 * 59.99893 * 5 3 2 30 30 H 1.08997 * 109.47186 * 179.97438 * 5 3 2 31 31 H 1.08996 * 109.47302 * 300.00475 * 5 3 2 32 32 H 1.08000 * 119.99957 * 359.97351 * 7 6 3 33 33 H 1.08006 * 119.99756 * 179.97438 * 8 7 6 34 34 H 0.97008 * 119.99402 * 4.02348 * 15 14 12 35 35 H 1.08998 * 109.46477 * 305.44045 * 20 10 9 36 36 H 1.08998 * 109.46961 * 65.43759 * 20 10 9 37 37 H 1.00901 * 110.99724 * 183.89438 * 21 20 10 38 38 H 1.00906 * 111.00032 * 307.85095 * 21 20 10 39 39 H 1.08004 * 119.99579 * 179.73062 * 22 9 8 40 40 H 1.07999 * 120.00192 * 0.02562 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5419 1.4444 0.1238 7 6 4.1463 2.0735 1.1961 8 6 5.5240 2.0747 1.3098 9 6 6.2972 1.4464 0.3516 10 6 7.7990 1.4472 0.4760 11 1 8.0887 1.9876 1.3773 12 6 8.4025 2.1214 -0.7292 13 1 8.6166 1.5473 -1.6185 14 6 8.6813 3.4713 -0.6964 15 7 8.2870 4.1997 0.3252 16 14 9.6258 4.2642 -2.0995 17 1 9.9583 3.2346 -3.1166 18 1 8.7915 5.3237 -2.7214 19 1 10.8789 4.8648 -1.5756 20 6 8.3047 0.0056 0.5604 21 7 9.7519 0.0082 0.8120 22 6 5.6930 0.8217 -0.7233 23 6 4.3151 0.8164 -0.8346 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8898 29 1 0.5488 2.1253 -1.3968 30 1 1.9981 3.1544 -1.3070 31 1 2.0697 1.5877 -2.1491 32 1 3.5422 2.5641 1.9449 33 1 5.9962 2.5666 2.1474 34 1 7.8517 3.7776 1.0824 35 1 7.7953 -0.5109 1.3739 36 1 8.1002 -0.5067 -0.3797 37 1 10.1211 -0.9308 0.8090 38 1 10.2344 0.5887 0.1424 39 1 6.2973 0.3345 -1.4743 40 1 3.8430 0.3249 -1.6724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259882295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:11 Heat of formation + Delta-G solvation = -29.428829 kcal Electronic energy + Delta-G solvation = -17997.814107 eV Core-core repulsion = 15388.972541 eV Total energy + Delta-G solvation = -2608.841566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59578 -37.97191 -36.14052 -34.30347 -32.31499 -31.69520 -30.27844 -28.30655 -26.08778 -25.25122 -23.69570 -23.23266 -21.66101 -20.56923 -18.72388 -17.41267 -16.85723 -16.30604 -15.84167 -15.64543 -15.46323 -15.13011 -14.87776 -14.58261 -14.28540 -14.06744 -13.94010 -13.69336 -13.01020 -12.93792 -12.74611 -12.71301 -12.51152 -12.24827 -12.13199 -11.94868 -11.63346 -11.54209 -11.37361 -11.24717 -10.70920 -10.45927 -9.68866 -9.47127 -9.13018 -8.54164 -6.25204 0.63681 0.67948 1.53010 1.61452 1.75693 2.57913 3.01645 3.25774 3.79722 3.87481 3.94592 4.17401 4.22181 4.25466 4.37786 4.48881 4.54004 4.59221 4.65570 4.67397 4.78369 4.81888 4.89363 4.99253 5.06185 5.15131 5.17953 5.20024 5.22487 5.37229 5.40388 5.45073 5.55350 5.76009 5.83403 5.90753 6.18322 6.24358 6.32888 6.39487 6.65615 6.83318 7.53970 8.84012 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025193 B = 0.005979 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.131332 B = 4682.161485 C = 5213.963058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.043 4.043 4 H 0.078 0.922 5 C -0.142 4.142 6 C -0.100 4.100 7 C -0.123 4.123 8 C -0.147 4.147 9 C -0.059 4.059 10 C 0.057 3.943 11 H 0.013 0.987 12 C -0.581 4.581 13 H 0.045 0.955 14 C -0.025 4.025 15 N -0.935 5.935 16 Si 1.113 2.887 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.281 1.281 20 C 0.093 3.907 21 N -0.851 5.851 22 C -0.123 4.123 23 C -0.115 4.115 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.260 0.740 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.340 0.660 38 H 0.346 0.654 39 H 0.108 0.892 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 -8.127 -2.422 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.061 4.061 4 H 0.097 0.903 5 C -0.199 4.199 6 C -0.101 4.101 7 C -0.141 4.141 8 C -0.165 4.165 9 C -0.060 4.060 10 C 0.037 3.963 11 H 0.032 0.968 12 C -0.619 4.619 13 H 0.063 0.937 14 C -0.224 4.224 15 N -0.572 5.572 16 Si 0.937 3.063 17 H -0.194 1.194 18 H -0.216 1.216 19 H -0.207 1.207 20 C -0.038 4.038 21 N -0.381 5.381 22 C -0.142 4.142 23 C -0.133 4.133 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.126 0.874 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.008 -6.375 -2.276 13.784 hybrid contribution -0.036 -1.514 -0.050 1.516 sum -12.044 -7.889 -2.326 14.585 Atomic orbital electron populations 1.21810 0.94290 1.02164 1.02358 1.21543 0.96792 0.94760 1.01863 1.20127 0.89037 0.97584 0.99376 0.90337 1.21874 1.02052 0.99702 0.96258 1.19973 0.96478 0.98812 0.94788 1.21150 0.93734 1.00330 0.98902 1.21068 0.94656 1.01425 0.99390 1.20611 0.97300 0.94473 0.93579 1.18016 0.88150 0.93377 0.96715 0.96834 1.21972 1.43580 0.96351 0.99985 0.93692 1.27043 0.96471 0.95605 1.03298 1.70823 1.39105 1.38665 1.08601 0.82976 0.75412 0.75173 0.72786 1.19436 1.21594 1.20677 1.21542 0.88942 0.96467 0.96880 1.58656 1.04037 1.16108 1.59345 1.20920 0.94917 1.00871 0.97452 1.21067 0.92767 1.00201 0.99290 0.91755 0.92060 0.92491 0.91897 0.92805 0.90235 0.94035 0.92659 0.85237 0.88648 0.92864 0.93385 0.96599 0.84731 0.84015 0.87411 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.67 71.98 0.70 -1.65 16 2 C -0.11 -2.31 5.14 30.60 0.16 -2.15 16 3 C -0.04 -1.04 2.56 -11.54 -0.03 -1.07 16 4 H 0.08 1.80 7.88 -2.39 -0.02 1.78 16 5 C -0.14 -3.16 8.76 71.98 0.63 -2.53 16 6 C -0.10 -3.29 4.78 -19.87 -0.09 -3.38 16 7 C -0.12 -4.54 9.67 22.27 0.22 -4.32 16 8 C -0.15 -6.51 9.64 22.27 0.21 -6.29 16 9 C -0.06 -2.73 4.77 -19.87 -0.09 -2.82 16 10 C 0.06 2.83 1.91 -12.29 -0.02 2.81 16 11 H 0.01 0.77 6.37 -2.38 -0.02 0.75 16 12 C -0.58 -31.25 6.91 25.60 0.18 -31.08 16 13 H 0.04 2.40 7.83 -2.91 -0.02 2.38 16 14 C -0.02 -1.39 5.44 84.65 0.46 -0.93 16 15 N -0.93 -57.01 13.62 21.45 0.29 -56.71 16 16 Si 1.11 50.25 29.91 68.60 2.05 52.30 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 C 0.09 3.96 5.98 86.31 0.52 4.47 16 21 N -0.85 -33.60 9.65 -186.72 -1.80 -35.40 16 22 C -0.12 -5.14 8.87 22.27 0.20 -4.94 16 23 C -0.12 -4.01 8.76 22.27 0.20 -3.81 16 24 H 0.06 0.91 6.56 -2.39 -0.02 0.90 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 1.29 7.57 -2.39 -0.02 1.27 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.37 6.57 -2.38 -0.02 1.36 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.23 7.39 -2.39 -0.02 1.21 16 32 H 0.13 4.07 7.95 -2.91 -0.02 4.04 16 33 H 0.10 4.37 7.95 -2.91 -0.02 4.35 16 34 H 0.26 16.13 6.64 -92.70 -0.62 15.52 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.02 0.66 7.60 -2.39 -0.02 0.64 16 37 H 0.34 10.80 9.08 -89.69 -0.81 9.99 16 38 H 0.35 14.43 8.00 -89.69 -0.72 13.71 16 39 H 0.11 4.45 7.66 -2.91 -0.02 4.43 16 40 H 0.13 3.85 7.16 -2.91 -0.02 3.83 16 Total: -1.00 -63.36 320.27 3.41 -59.96 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.35 Total: 37.54 kcal Atomic # 6 Polarization: -60.91 SS G_CDS: 3.22 Total: -57.69 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -1.51 Total: -92.11 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -63.36 3.41 -59.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259882295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.530 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds