Wall clock time and date at job start Mon Mar 30 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47587 * 2 1 4 4 C 1.50698 * 109.47017 * 240.00092 * 2 1 3 5 5 C 1.38238 * 119.99970 * 118.12323 * 4 2 1 6 6 C 1.38237 * 120.00131 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99964 * 359.97438 * 6 5 4 8 8 C 1.38243 * 119.99860 * 359.97438 * 7 6 5 9 9 C 1.38228 * 120.00082 * 359.97438 * 8 7 6 10 10 N 1.46905 * 109.47633 * 120.00061 * 2 1 3 11 11 C 1.46895 * 110.99962 * 153.28073 * 10 2 1 12 12 C 1.46898 * 111.00130 * 277.24150 * 10 2 1 13 13 C 1.53000 * 109.46677 * 294.68347 * 12 10 2 14 14 C 1.53006 * 109.47265 * 54.68052 * 12 10 2 15 15 C 1.50688 * 109.47144 * 174.68418 * 12 10 2 16 16 H 1.08000 * 120.00431 * 359.97438 * 15 12 10 17 17 C 1.37879 * 120.00089 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99962 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00155 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47177 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47241 * 120.00211 * 19 17 15 22 22 H 1.48504 * 109.47124 * 239.99883 * 19 17 15 23 23 H 1.08996 * 109.47482 * 69.77594 * 1 2 3 24 24 H 1.09004 * 109.47260 * 189.77556 * 1 2 3 25 25 H 1.09001 * 109.46989 * 309.76817 * 1 2 3 26 26 H 1.08005 * 120.00152 * 0.25614 * 5 4 2 27 27 H 1.07999 * 120.00425 * 179.97438 * 6 5 4 28 28 H 1.08002 * 120.00049 * 179.97438 * 7 6 5 29 29 H 1.07996 * 119.99614 * 179.97438 * 8 7 6 30 30 H 1.07997 * 120.00390 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47162 * 52.14065 * 11 10 2 32 32 H 1.09004 * 109.46933 * 172.13757 * 11 10 2 33 33 H 1.08994 * 109.47335 * 292.13323 * 11 10 2 34 34 H 1.08999 * 109.47369 * 65.56641 * 13 12 10 35 35 H 1.09004 * 109.46913 * 185.56162 * 13 12 10 36 36 H 1.08996 * 109.47477 * 305.56177 * 13 12 10 37 37 H 1.09002 * 109.46619 * 46.19891 * 14 12 10 38 38 H 1.08997 * 109.47086 * 166.19669 * 14 12 10 39 39 H 1.08997 * 109.46877 * 286.20358 * 14 12 10 40 40 H 0.97004 * 119.99992 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 2.7947 -0.0278 -2.1598 6 6 3.2559 -0.6795 -3.2883 7 6 2.9551 -2.0140 -3.4872 8 6 2.1936 -2.6969 -2.5572 9 6 1.7333 -2.0455 -1.4283 10 7 2.0197 -0.6925 1.1994 11 6 3.3501 -1.2704 0.9672 12 6 2.0323 0.2087 2.3594 13 6 3.0494 1.3274 2.1250 14 6 0.6407 0.8160 2.5486 15 6 2.4141 -0.5667 3.5938 16 1 2.6258 -1.6235 3.5238 17 6 2.4931 0.0728 4.8127 18 7 2.2348 1.3595 4.8982 19 14 2.9656 -0.8885 6.3430 20 1 3.2033 -2.3091 5.9815 21 1 4.2040 -0.3129 6.9265 22 1 1.8659 -0.8076 7.3377 23 1 -0.3634 0.3552 -0.9643 24 1 -0.3634 -1.0128 0.1745 25 1 -0.3633 0.6574 0.7899 26 1 3.0338 1.0136 -2.0020 27 1 3.8512 -0.1462 -4.0146 28 1 3.3151 -2.5231 -4.3690 29 1 1.9583 -3.7394 -2.7128 30 1 1.1380 -2.5788 -0.7020 31 1 4.0171 -0.5017 0.5770 32 1 3.7484 -1.6544 1.9064 33 1 3.2720 -2.0840 0.2462 34 1 2.7207 1.9486 1.2918 35 1 3.1307 1.9387 3.0239 36 1 4.0212 0.8921 1.8924 37 1 -0.1118 0.0312 2.4705 38 1 0.5785 1.2824 3.5318 39 1 0.4642 1.5666 1.7783 40 1 2.2901 1.8094 5.7558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:47 Heat of formation + Delta-G solvation = 45.920945 kcal Electronic energy + Delta-G solvation = -18925.949588 eV Core-core repulsion = 16320.375434 eV Total energy + Delta-G solvation = -2605.574154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60294 -37.48009 -33.64941 -31.42775 -30.67772 -30.05900 -28.68918 -25.64751 -25.03126 -24.20235 -22.84172 -22.22829 -20.28742 -18.35776 -16.55387 -15.90712 -15.40541 -14.92429 -14.63982 -13.88866 -13.82736 -13.39437 -13.06042 -12.93022 -12.59522 -12.47863 -12.05786 -11.71135 -11.47101 -11.24803 -11.00136 -10.82424 -10.69251 -10.61457 -10.55642 -10.51993 -10.01058 -9.93846 -9.67434 -9.47569 -8.76011 -8.63484 -8.36797 -8.27264 -7.03683 -5.96840 -4.03964 1.62489 1.65858 3.29896 3.38332 3.42822 4.04544 4.41986 5.00283 5.09457 5.20542 5.22194 5.30991 5.38806 5.74721 5.80476 5.92318 6.02773 6.16828 6.27582 6.31441 6.39557 6.49009 6.54287 6.65721 6.70587 6.72877 6.78520 6.87688 6.90790 6.92523 7.03908 7.05894 7.26893 7.30686 7.52549 7.68293 7.84535 7.92658 8.30757 8.50840 8.67235 9.02296 9.61579 11.05192 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035700 B = 0.006330 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.123775 B = 4422.177916 C = 4634.377471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.112 3.888 3 H 0.049 0.951 4 C -0.061 4.061 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.095 4.095 10 N -0.520 5.520 11 C 0.032 3.968 12 C 0.232 3.768 13 C -0.168 4.168 14 C -0.133 4.133 15 C -0.487 4.487 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.894 3.106 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.011 0.989 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.009 0.991 35 H 0.091 0.909 36 H 0.026 0.974 37 H 0.036 0.964 38 H 0.086 0.914 39 H 0.016 0.984 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -3.139 -12.372 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.003 3.997 3 H 0.067 0.933 4 C -0.062 4.062 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.151 4.151 8 C -0.146 4.146 9 C -0.113 4.113 10 N -0.244 5.244 11 C -0.116 4.116 12 C 0.145 3.855 13 C -0.227 4.227 14 C -0.191 4.191 15 C -0.526 4.526 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.722 3.278 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.211 1.211 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.101 0.899 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.034 0.966 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.629 -3.385 -12.105 12.585 hybrid contribution 0.971 0.254 0.595 1.167 sum 0.342 -3.131 -11.510 11.933 Atomic orbital electron populations 1.22330 0.94484 1.03054 1.01085 1.20641 0.95674 0.95649 0.87699 0.93344 1.20113 0.96051 0.94382 0.95642 1.21091 0.98457 0.99856 0.94553 1.21023 1.00591 0.94937 0.97734 1.21028 0.99867 0.94782 0.99413 1.21122 0.98967 0.99630 0.94831 1.21072 0.99264 0.94269 0.96742 1.62564 1.23991 1.35309 1.02581 1.22320 0.90393 0.97644 1.01257 1.18696 0.92054 0.88004 0.86761 1.22431 0.98714 1.00722 1.00848 1.22133 0.97115 0.97823 1.01983 1.21112 1.44903 0.95415 0.91167 0.91991 1.24878 0.95598 0.94935 0.98761 1.69827 1.49890 1.08574 1.24684 0.86500 0.77944 0.80200 0.83109 1.19846 1.21278 1.21117 0.94202 0.92309 0.89919 0.86640 0.86701 0.86804 0.86569 0.85531 0.97069 0.90833 0.93370 0.97239 0.89077 0.95474 0.94519 0.89585 0.96558 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.15 37.15 0.30 -2.31 16 2 C 0.11 2.07 1.92 -68.87 -0.13 1.94 16 3 H 0.05 0.96 5.57 -51.93 -0.29 0.67 16 4 C -0.06 -1.01 3.34 -104.62 -0.35 -1.36 16 5 C -0.12 -1.82 9.67 -39.58 -0.38 -2.21 16 6 C -0.12 -1.64 10.05 -39.58 -0.40 -2.03 16 7 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 8 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 9 C -0.10 -1.46 7.30 -39.58 -0.29 -1.75 16 10 N -0.52 -11.02 4.38 -221.96 -0.97 -11.99 16 11 C 0.03 0.66 7.60 60.06 0.46 1.11 16 12 C 0.23 5.57 0.43 -132.76 -0.06 5.51 16 13 C -0.17 -4.03 7.70 37.16 0.29 -3.75 16 14 C -0.13 -3.12 6.61 37.16 0.25 -2.87 16 15 C -0.49 -12.90 7.22 -34.45 -0.25 -13.15 16 16 H 0.06 1.68 6.87 -52.49 -0.36 1.32 16 17 C 0.06 1.56 5.07 -17.82 -0.09 1.47 16 18 N -0.89 -24.17 9.33 55.43 0.52 -23.66 16 19 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 24 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 25 H 0.08 1.50 4.14 -51.93 -0.22 1.28 16 26 H 0.12 1.66 7.95 -52.48 -0.42 1.24 16 27 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.13 1.99 7.85 -52.49 -0.41 1.58 16 31 H 0.01 0.22 6.77 -51.93 -0.35 -0.13 16 32 H 0.07 1.61 6.27 -51.93 -0.33 1.29 16 33 H 0.05 0.90 5.73 -51.93 -0.30 0.60 16 34 H 0.01 0.20 6.35 -51.93 -0.33 -0.13 16 35 H 0.09 2.41 5.94 -51.93 -0.31 2.10 16 36 H 0.03 0.63 6.36 -51.93 -0.33 0.30 16 37 H 0.04 0.83 7.04 -51.93 -0.37 0.46 16 38 H 0.09 2.24 5.83 -51.93 -0.30 1.94 16 39 H 0.02 0.34 6.03 -51.93 -0.31 0.03 16 40 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 296.86 15.07 4.47 4.47 Total: -1.00 -26.96 296.86 -8.30 -35.27 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.85 Total: 3.49 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -1.45 Total: -23.56 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.46 Total: -35.65 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.96 -8.30 -35.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.190 kcal (2) G-P(sol) polarization free energy of solvation -26.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds