Wall clock time and date at job start Mon Mar 30 2020 06:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46844 * 2 1 4 4 C 1.50704 * 109.46752 * 119.99142 * 2 1 3 5 5 C 1.38230 * 119.99754 * 76.71263 * 4 2 1 6 6 C 1.38235 * 119.99770 * 179.80408 * 5 4 2 7 7 C 1.38232 * 120.00321 * 0.40083 * 6 5 4 8 8 C 1.38238 * 119.99557 * 359.84914 * 7 6 5 9 9 C 1.38227 * 120.00264 * 359.96204 * 8 7 6 10 10 N 1.46894 * 109.47390 * 239.99251 * 2 1 3 11 11 C 1.46902 * 111.00099 * 38.82891 * 10 2 1 12 12 C 1.46907 * 110.99942 * 162.77390 * 10 2 1 13 13 C 1.53001 * 109.46773 * 64.16351 * 12 10 2 14 14 C 1.53001 * 109.47370 * 304.16625 * 12 10 2 15 15 C 1.50695 * 109.47154 * 184.16146 * 12 10 2 16 16 H 1.08005 * 120.00214 * 355.88536 * 15 12 10 17 17 C 1.37881 * 120.00236 * 175.60503 * 15 12 10 18 18 N 1.31509 * 120.00370 * 198.62668 * 17 15 12 19 19 Si 1.86799 * 119.99618 * 18.62519 * 17 15 12 20 20 H 1.48504 * 109.47150 * 89.27551 * 19 17 15 21 21 H 1.48497 * 109.47349 * 209.27586 * 19 17 15 22 22 H 1.48498 * 109.47367 * 329.27862 * 19 17 15 23 23 H 1.09007 * 109.46879 * 172.55848 * 1 2 3 24 24 H 1.08994 * 109.47787 * 292.56044 * 1 2 3 25 25 H 1.09004 * 109.47142 * 52.56298 * 1 2 3 26 26 H 1.08001 * 120.00296 * 359.97438 * 5 4 2 27 27 H 1.08003 * 119.99795 * 180.22794 * 6 5 4 28 28 H 1.08000 * 120.00253 * 179.83610 * 7 6 5 29 29 H 1.08004 * 120.00017 * 179.97438 * 8 7 6 30 30 H 1.08004 * 120.00087 * 180.02562 * 9 8 7 31 31 H 1.08997 * 109.47142 * 176.76053 * 11 10 2 32 32 H 1.09009 * 109.46696 * 296.75242 * 11 10 2 33 33 H 1.09002 * 109.47455 * 56.74591 * 11 10 2 34 34 H 1.09001 * 109.46941 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47357 * 300.00008 * 13 12 10 36 36 H 1.08997 * 109.47053 * 59.99827 * 13 12 10 37 37 H 1.09000 * 109.46565 * 314.68939 * 14 12 10 38 38 H 1.08994 * 109.46978 * 74.69041 * 14 12 10 39 39 H 1.08999 * 109.47062 * 194.69366 * 14 12 10 40 40 H 0.96999 * 120.00085 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 2.0031 -2.0909 1.2920 6 6 2.4676 -2.7425 2.4192 7 6 2.9534 -2.0133 3.4883 8 6 2.9777 -0.6324 3.4289 9 6 2.5169 0.0191 2.3003 10 7 2.0197 -0.6926 -1.1993 11 6 1.1879 -0.3743 -2.3676 12 6 3.4302 -0.3707 -1.4540 13 6 4.2895 -0.8984 -0.3033 14 6 3.5960 1.1466 -1.5601 15 6 3.8675 -1.0153 -2.7441 16 1 3.1885 -1.6591 -3.2834 17 6 5.1325 -0.7786 -3.2389 18 7 5.3995 -1.0196 -4.5039 19 14 6.4670 -0.1155 -2.1125 20 1 7.1825 -1.2484 -1.4724 21 1 7.4281 0.6921 -2.9057 22 1 5.8513 0.7369 -1.0640 23 1 -0.3633 -1.0191 -0.1331 24 1 -0.3634 0.3942 0.9489 25 1 -0.3633 0.6247 -0.8160 26 1 1.6201 -2.6606 0.4582 27 1 2.4483 -3.8214 2.4656 28 1 3.3139 -2.5223 4.3700 29 1 3.3569 -0.0626 4.2644 30 1 2.5363 1.0980 2.2537 31 1 1.6059 -0.8539 -3.2526 32 1 0.1740 -0.7386 -2.2017 33 1 1.1665 0.7054 -2.5151 34 1 5.3361 -0.6591 -0.4921 35 1 3.9733 -0.4322 0.6297 36 1 4.1714 -1.9793 -0.2277 37 1 2.8055 1.5552 -2.1896 38 1 3.5343 1.5892 -0.5660 39 1 4.5663 1.3761 -2.0005 40 1 6.2893 -0.8527 -4.8521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:50 Heat of formation + Delta-G solvation = 62.399827 kcal Electronic energy + Delta-G solvation = -19306.674248 eV Core-core repulsion = 16701.814672 eV Total energy + Delta-G solvation = -2604.859577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72668 -37.52529 -33.81568 -31.60862 -30.94068 -30.49330 -28.14711 -26.24216 -25.70519 -24.38449 -22.54626 -22.04872 -20.46342 -18.54679 -16.45614 -15.93177 -15.71098 -15.08787 -14.96479 -14.07298 -13.74654 -13.60689 -13.10993 -12.93881 -12.77972 -12.58748 -12.25445 -12.13060 -11.85029 -11.54502 -11.36992 -11.21844 -11.08024 -10.67652 -10.50027 -10.28846 -10.13374 -10.09388 -9.91246 -9.16666 -8.82779 -8.51351 -8.35640 -7.99206 -7.28167 -6.10688 -4.02020 1.72345 1.79702 3.30595 3.40191 3.42754 4.15188 4.42445 4.75810 5.13307 5.20582 5.25785 5.29932 5.47809 5.63685 5.66556 5.82429 5.92348 5.96341 6.12767 6.16374 6.23249 6.32453 6.37529 6.39550 6.43791 6.49235 6.55333 6.59443 6.79025 6.80684 6.84434 6.89459 7.02560 7.07985 7.15554 7.37037 7.44593 7.67007 8.02700 8.19112 8.68508 8.99714 9.57531 11.01736 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.009382 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.709736 B = 2983.584720 C = 3573.041600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.044 4.044 5 C -0.086 4.086 6 C -0.125 4.125 7 C -0.134 4.134 8 C -0.126 4.126 9 C -0.128 4.128 10 N -0.514 5.514 11 C 0.030 3.970 12 C 0.211 3.789 13 C -0.149 4.149 14 C -0.173 4.173 15 C -0.506 4.506 16 H 0.083 0.917 17 C 0.077 3.923 18 N -0.890 5.890 19 Si 0.869 3.131 20 H -0.285 1.285 21 H -0.304 1.304 22 H -0.246 1.246 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.130 0.870 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.014 0.986 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.025 0.975 39 H 0.056 0.944 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 1.645 12.685 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.005 4.005 3 H 0.069 0.931 4 C -0.045 4.045 5 C -0.105 4.105 6 C -0.143 4.143 7 C -0.153 4.153 8 C -0.144 4.144 9 C -0.146 4.146 10 N -0.238 5.238 11 C -0.118 4.118 12 C 0.122 3.878 13 C -0.206 4.206 14 C -0.232 4.232 15 C -0.543 4.543 16 H 0.101 0.899 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.700 3.300 20 H -0.212 1.212 21 H -0.232 1.232 22 H -0.172 1.172 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.281 1.133 12.596 14.593 hybrid contribution 1.179 1.208 0.377 1.730 sum -6.101 2.341 12.973 14.526 Atomic orbital electron populations 1.21945 0.94624 1.02351 1.01031 1.20650 0.94237 0.95631 0.89966 0.93135 1.19785 0.96269 0.94150 0.94249 1.21044 0.98210 0.94107 0.97109 1.21137 0.99673 0.99520 0.93997 1.20997 1.01407 0.94154 0.98707 1.20951 1.00932 0.94599 0.97936 1.20960 1.00345 0.99430 0.93903 1.62216 1.03718 1.56229 1.01614 1.22381 0.96055 0.98153 0.95206 1.18959 0.84038 0.89914 0.94922 1.22661 0.98569 1.01275 0.98074 1.22827 1.01712 1.00405 0.98224 1.20825 0.99772 1.29814 1.03913 0.89942 1.24887 0.98556 0.94784 0.94340 1.69986 1.21455 1.48902 1.12357 0.87572 0.81697 0.79521 0.81200 1.21242 1.23230 1.17178 0.91799 0.92986 0.92396 0.85210 0.86656 0.86966 0.86885 0.86887 0.89453 0.93305 0.96743 0.94356 0.93694 0.92714 0.93612 0.95585 0.92556 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.92 37.16 0.29 -1.70 16 2 C 0.10 1.76 2.15 -68.87 -0.15 1.61 16 3 H 0.05 0.89 5.57 -51.93 -0.29 0.61 16 4 C -0.04 -0.72 2.40 -104.62 -0.25 -0.97 16 5 C -0.09 -1.40 7.94 -39.59 -0.31 -1.72 16 6 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 7 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 8 C -0.13 -1.74 10.05 -39.59 -0.40 -2.13 16 9 C -0.13 -1.94 8.42 -39.59 -0.33 -2.27 16 10 N -0.51 -10.22 3.90 -221.94 -0.87 -11.09 16 11 C 0.03 0.57 7.80 60.07 0.47 1.04 16 12 C 0.21 4.82 0.44 -132.75 -0.06 4.76 16 13 C -0.15 -3.35 6.46 37.16 0.24 -3.11 16 14 C -0.17 -3.82 6.74 37.16 0.25 -3.57 16 15 C -0.51 -13.73 7.79 -34.44 -0.27 -13.99 16 16 H 0.08 2.43 6.55 -52.48 -0.34 2.08 16 17 C 0.08 2.17 5.21 -17.82 -0.09 2.08 16 18 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 19 Si 0.87 21.78 22.97 -169.99 -3.91 17.88 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 22 H -0.25 -5.79 4.54 56.52 0.26 -5.53 16 23 H 0.06 0.89 7.92 -51.93 -0.41 0.48 16 24 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 25 H 0.06 0.77 6.96 -51.93 -0.36 0.41 16 26 H 0.13 2.19 7.82 -52.49 -0.41 1.78 16 27 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 30 H 0.11 1.57 8.02 -52.48 -0.42 1.15 16 31 H 0.09 1.89 5.83 -51.93 -0.30 1.59 16 32 H 0.05 0.79 6.51 -51.92 -0.34 0.45 16 33 H 0.01 0.26 6.57 -51.93 -0.34 -0.08 16 34 H 0.04 0.90 2.59 -51.93 -0.13 0.77 16 35 H 0.04 0.92 4.27 -51.93 -0.22 0.70 16 36 H 0.05 1.25 7.49 -51.93 -0.39 0.86 16 37 H 0.04 0.97 6.26 -51.93 -0.33 0.65 16 38 H 0.03 0.52 6.77 -51.93 -0.35 0.16 16 39 H 0.06 1.32 4.23 -51.93 -0.22 1.10 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 286.95 15.07 4.32 4.32 Total: -1.00 -29.24 286.95 -6.91 -36.15 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.83 Total: 3.15 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -1.41 Total: -24.39 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.09 Total: -37.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -3.91 Total: 17.88 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.24 -6.91 -36.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.550 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds