Wall clock time and date at job start Mon Mar 30 2020 06:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46844 * 2 1 4 4 C 1.50704 * 109.46752 * 119.99142 * 2 1 3 5 5 C 1.38230 * 119.99754 * 76.71263 * 4 2 1 6 6 C 1.38235 * 119.99770 * 179.80408 * 5 4 2 7 7 C 1.38232 * 120.00321 * 0.40083 * 6 5 4 8 8 C 1.38238 * 119.99557 * 359.84914 * 7 6 5 9 9 C 1.38227 * 120.00264 * 359.96204 * 8 7 6 10 10 N 1.46894 * 109.47390 * 239.99251 * 2 1 3 11 11 C 1.46902 * 111.00099 * 38.82891 * 10 2 1 12 12 C 1.46907 * 110.99942 * 162.77390 * 10 2 1 13 13 C 1.53001 * 109.46773 * 64.16351 * 12 10 2 14 14 C 1.53001 * 109.47370 * 304.16625 * 12 10 2 15 15 C 1.50695 * 109.47154 * 184.16146 * 12 10 2 16 16 H 1.08005 * 120.00214 * 355.88536 * 15 12 10 17 17 C 1.37881 * 120.00236 * 175.60503 * 15 12 10 18 18 N 1.31509 * 120.00370 * 198.62668 * 17 15 12 19 19 Si 1.86799 * 119.99618 * 18.62519 * 17 15 12 20 20 H 1.48504 * 109.47150 * 89.27551 * 19 17 15 21 21 H 1.48497 * 109.47349 * 209.27586 * 19 17 15 22 22 H 1.48498 * 109.47367 * 329.27862 * 19 17 15 23 23 H 1.09007 * 109.46879 * 172.55848 * 1 2 3 24 24 H 1.08994 * 109.47787 * 292.56044 * 1 2 3 25 25 H 1.09004 * 109.47142 * 52.56298 * 1 2 3 26 26 H 1.08001 * 120.00296 * 359.97438 * 5 4 2 27 27 H 1.08003 * 119.99795 * 180.22794 * 6 5 4 28 28 H 1.08000 * 120.00253 * 179.83610 * 7 6 5 29 29 H 1.08004 * 120.00017 * 179.97438 * 8 7 6 30 30 H 1.08004 * 120.00087 * 180.02562 * 9 8 7 31 31 H 1.08997 * 109.47142 * 176.76053 * 11 10 2 32 32 H 1.09009 * 109.46696 * 296.75242 * 11 10 2 33 33 H 1.09002 * 109.47455 * 56.74591 * 11 10 2 34 34 H 1.09001 * 109.46941 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47357 * 300.00008 * 13 12 10 36 36 H 1.08997 * 109.47053 * 59.99827 * 13 12 10 37 37 H 1.09000 * 109.46565 * 314.68939 * 14 12 10 38 38 H 1.08994 * 109.46978 * 74.69041 * 14 12 10 39 39 H 1.08999 * 109.47062 * 194.69366 * 14 12 10 40 40 H 0.96999 * 120.00085 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 2.0031 -2.0909 1.2920 6 6 2.4676 -2.7425 2.4192 7 6 2.9534 -2.0133 3.4883 8 6 2.9777 -0.6324 3.4289 9 6 2.5169 0.0191 2.3003 10 7 2.0197 -0.6926 -1.1993 11 6 1.1879 -0.3743 -2.3676 12 6 3.4302 -0.3707 -1.4540 13 6 4.2895 -0.8984 -0.3033 14 6 3.5960 1.1466 -1.5601 15 6 3.8675 -1.0153 -2.7441 16 1 3.1885 -1.6591 -3.2834 17 6 5.1325 -0.7786 -3.2389 18 7 5.3995 -1.0196 -4.5039 19 14 6.4670 -0.1155 -2.1125 20 1 7.1825 -1.2484 -1.4724 21 1 7.4281 0.6921 -2.9057 22 1 5.8513 0.7369 -1.0640 23 1 -0.3633 -1.0191 -0.1331 24 1 -0.3634 0.3942 0.9489 25 1 -0.3633 0.6247 -0.8160 26 1 1.6201 -2.6606 0.4582 27 1 2.4483 -3.8214 2.4656 28 1 3.3139 -2.5223 4.3700 29 1 3.3569 -0.0626 4.2644 30 1 2.5363 1.0980 2.2537 31 1 1.6059 -0.8539 -3.2526 32 1 0.1740 -0.7386 -2.2017 33 1 1.1665 0.7054 -2.5151 34 1 5.3361 -0.6591 -0.4921 35 1 3.9733 -0.4322 0.6297 36 1 4.1714 -1.9793 -0.2277 37 1 2.8055 1.5552 -2.1896 38 1 3.5343 1.5892 -0.5660 39 1 4.5663 1.3761 -2.0005 40 1 6.2893 -0.8527 -4.8521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259973104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:49 Heat of formation + Delta-G solvation = 44.345764 kcal Electronic energy + Delta-G solvation = -19307.457131 eV Core-core repulsion = 16701.814672 eV Total energy + Delta-G solvation = -2605.642459 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06896 -38.91883 -35.51387 -33.48924 -32.38280 -31.60571 -29.41239 -27.97832 -27.48367 -26.18092 -23.80287 -23.20152 -21.99411 -20.09410 -17.94527 -17.60860 -17.51042 -16.55228 -16.19267 -15.45219 -15.23187 -15.10806 -14.88732 -14.33771 -14.13309 -14.02725 -13.98789 -13.77067 -13.26721 -12.98761 -12.86883 -12.68378 -12.50077 -12.18692 -12.03830 -11.99117 -11.76494 -11.61448 -11.49897 -11.12049 -10.66219 -10.43511 -9.62659 -9.26564 -8.85151 -8.29851 -6.23330 0.60808 0.68348 1.30751 1.35525 1.42602 2.32913 3.00912 3.05011 3.30243 3.94462 4.14823 4.29091 4.35922 4.41662 4.41881 4.47576 4.52706 4.66221 4.71018 4.75604 4.76918 4.81397 4.84575 4.97301 5.02501 5.07581 5.10630 5.23712 5.27012 5.31438 5.37181 5.40221 5.62634 5.70801 5.75861 5.80232 5.90060 6.16239 6.28180 6.48495 6.80444 6.84128 7.39619 8.86104 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.009382 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.709736 B = 2983.584720 C = 3573.041600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.104 3.896 3 H 0.049 0.951 4 C -0.062 4.062 5 C -0.104 4.104 6 C -0.132 4.132 7 C -0.134 4.134 8 C -0.125 4.125 9 C -0.138 4.138 10 N -0.523 5.523 11 C 0.036 3.964 12 C 0.211 3.789 13 C -0.141 4.141 14 C -0.170 4.170 15 C -0.500 4.500 16 H 0.044 0.956 17 C 0.023 3.977 18 N -0.939 5.939 19 Si 0.922 3.078 20 H -0.288 1.288 21 H -0.309 1.309 22 H -0.216 1.216 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.126 0.874 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.018 0.982 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 2.761 15.965 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.004 4.004 3 H 0.066 0.934 4 C -0.063 4.063 5 C -0.123 4.123 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.143 4.143 9 C -0.156 4.156 10 N -0.246 5.246 11 C -0.112 4.112 12 C 0.121 3.879 13 C -0.198 4.198 14 C -0.229 4.229 15 C -0.538 4.538 16 H 0.063 0.937 17 C -0.174 4.174 18 N -0.579 5.579 19 Si 0.751 3.249 20 H -0.215 1.215 21 H -0.238 1.238 22 H -0.140 1.140 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.148 0.852 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.144 0.856 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.662 2.255 15.903 17.796 hybrid contribution 1.171 0.776 -0.620 1.536 sum -6.491 3.030 15.283 16.878 Atomic orbital electron populations 1.21897 0.92524 1.02529 1.02378 1.20736 0.96022 0.95018 0.88638 0.93358 1.19795 0.97656 0.94242 0.94580 1.21015 0.99449 0.94311 0.97500 1.21382 0.99308 1.00571 0.93775 1.21366 1.00262 0.94390 0.99132 1.21322 0.99849 0.94949 0.98210 1.21181 1.00288 1.00201 0.93939 1.62125 1.02313 1.57301 1.02909 1.22291 0.97113 0.98031 0.93734 1.18809 0.86082 0.90122 0.92874 1.22566 0.97630 1.00735 0.98877 1.22737 1.00888 0.99634 0.99627 1.21102 0.98911 1.28456 1.05298 0.93744 1.25604 1.00779 0.95715 0.95339 1.70116 1.21907 1.51536 1.14299 0.86704 0.78857 0.79260 0.80069 1.21499 1.23819 1.13988 0.92028 0.91080 0.91770 0.86947 0.85176 0.84219 0.84122 0.85586 0.93175 0.90419 0.96335 0.95385 0.91282 0.93909 0.93442 0.92992 0.94095 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 7.92 71.98 0.57 -2.90 16 2 C 0.10 3.29 2.15 44.17 0.09 3.39 16 3 H 0.05 1.56 5.57 -2.39 -0.01 1.55 16 4 C -0.06 -1.89 2.40 -19.86 -0.05 -1.94 16 5 C -0.10 -3.23 7.94 22.27 0.18 -3.06 16 6 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 7 C -0.13 -3.11 10.05 22.27 0.22 -2.88 16 8 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 9 C -0.14 -3.67 8.42 22.27 0.19 -3.48 16 10 N -0.52 -20.44 3.90 -856.10 -3.34 -23.78 16 11 C 0.04 1.37 7.80 127.69 1.00 2.37 16 12 C 0.21 9.51 0.44 2.78 0.00 9.51 16 13 C -0.14 -6.11 6.46 71.98 0.47 -5.64 16 14 C -0.17 -7.20 6.74 71.98 0.49 -6.71 16 15 C -0.50 -27.86 7.79 25.60 0.20 -27.66 16 16 H 0.04 2.77 6.55 -2.91 -0.02 2.75 16 17 C 0.02 1.36 5.21 84.66 0.44 1.80 16 18 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 19 Si 0.92 45.01 22.97 68.60 1.58 46.58 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.31 -15.27 7.11 99.48 0.71 -14.57 16 22 H -0.22 -9.45 4.54 99.48 0.45 -9.00 16 23 H 0.06 1.60 7.92 -2.38 -0.02 1.58 16 24 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 25 H 0.06 1.54 6.96 -2.39 -0.02 1.53 16 26 H 0.11 3.79 7.82 -2.91 -0.02 3.77 16 27 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 28 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.13 2.97 8.02 -2.91 -0.02 2.95 16 31 H 0.05 2.26 5.83 -2.39 -0.01 2.25 16 32 H 0.08 2.45 6.51 -2.38 -0.02 2.43 16 33 H 0.02 0.67 6.57 -2.39 -0.02 0.65 16 34 H 0.03 1.25 2.59 -2.39 -0.01 1.25 16 35 H 0.07 2.65 4.27 -2.39 -0.01 2.64 16 36 H 0.04 1.92 7.49 -2.39 -0.02 1.90 16 37 H 0.05 1.95 6.26 -2.39 -0.01 1.94 16 38 H 0.05 1.91 6.77 -2.39 -0.02 1.90 16 39 H 0.04 1.84 4.23 -2.39 -0.01 1.83 16 40 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -64.16 286.95 3.55 -60.62 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.77 Total: 18.08 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 4.24 Total: -43.20 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -3.04 Total: -82.09 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.58 Total: 46.58 kcal Total: -64.16 3.55 -60.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.961 kcal (2) G-P(sol) polarization free energy of solvation -64.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds