Wall clock time and date at job start Mon Mar 30 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99933 * 2 1 4 4 C 1.46905 * 110.99799 * 123.95142 * 2 1 3 5 5 C 1.50694 * 109.47008 * 66.05053 * 4 2 1 6 6 C 1.38265 * 119.99872 * 269.72301 * 5 4 2 7 7 C 1.38210 * 119.99846 * 179.78681 * 6 5 4 8 8 C 1.38263 * 120.00222 * 0.44472 * 7 6 5 9 9 C 1.38218 * 119.99827 * 359.80851 * 8 7 6 10 10 C 1.50699 * 119.99793 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.46902 * 177.29970 * 10 9 8 12 12 C 1.53002 * 109.46697 * 297.29337 * 10 9 8 13 13 C 1.50697 * 109.47527 * 57.29454 * 10 9 8 14 14 H 1.08003 * 119.99524 * 0.09434 * 13 10 9 15 15 C 1.37873 * 119.99840 * 180.09645 * 13 10 9 16 16 N 1.31511 * 120.00096 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99741 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47062 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47181 * 119.99972 * 17 15 13 20 20 H 1.48491 * 109.47325 * 239.99806 * 17 15 13 21 21 C 1.38217 * 120.00166 * 89.99378 * 5 4 2 22 22 H 1.08998 * 109.47332 * 59.99875 * 1 2 3 23 23 H 1.09004 * 109.46894 * 299.99929 * 1 2 3 24 24 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47057 * 63.95869 * 3 2 1 26 26 H 1.09004 * 109.47220 * 183.95080 * 3 2 1 27 27 H 1.09000 * 109.47073 * 303.95567 * 3 2 1 28 28 H 1.09007 * 109.46644 * 186.04386 * 4 2 1 29 29 H 1.08996 * 109.47270 * 306.04242 * 4 2 1 30 30 H 1.07992 * 119.99584 * 359.97438 * 6 5 4 31 31 H 1.08000 * 120.00046 * 180.27568 * 7 6 5 32 32 H 1.07997 * 120.00088 * 179.83799 * 8 7 6 33 33 H 1.09003 * 109.47610 * 59.99183 * 11 10 9 34 34 H 1.09003 * 109.47275 * 179.97438 * 11 10 9 35 35 H 1.09007 * 109.47118 * 299.99715 * 11 10 9 36 36 H 1.08997 * 109.47333 * 59.99986 * 12 10 9 37 37 H 1.09004 * 109.47096 * 180.02562 * 12 10 9 38 38 H 1.09009 * 109.47374 * 300.00319 * 12 10 9 39 39 H 0.96999 * 119.99801 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.00098 * 359.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6370 -2.2204 0.9729 6 6 0.4536 -2.7046 1.4991 7 6 0.1227 -4.0375 1.3441 8 6 0.9794 -4.8888 0.6710 9 6 2.1649 -4.4058 0.1496 10 6 3.0984 -5.3335 -0.5846 11 6 4.2944 -4.5396 -1.1138 12 6 3.5914 -6.4220 0.3710 13 6 2.3683 -5.9711 -1.7385 14 1 1.3324 -5.7276 -1.9227 15 6 3.0229 -6.8653 -2.5588 16 7 4.2845 -7.1614 -2.3346 17 14 2.1177 -7.6562 -3.9887 18 1 0.7185 -7.1600 -4.0240 19 1 2.7998 -7.3065 -5.2606 20 1 2.1151 -9.1313 -3.8178 21 6 2.4938 -3.0715 0.3007 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.7044 1.8723 0.9234 26 1 3.0828 1.3433 -0.0708 27 1 1.5897 1.9163 -0.8524 28 1 3.0798 -0.6611 1.1756 29 1 1.5611 -0.3872 2.0628 30 1 -0.2136 -2.0405 2.0284 31 1 -0.8037 -4.4148 1.7512 32 1 0.7221 -5.9309 0.5522 33 1 4.8224 -4.0784 -0.2792 34 1 4.9698 -5.2107 -1.6445 35 1 3.9431 -3.7641 -1.7946 36 1 2.7394 -6.9876 0.7482 37 1 4.2670 -7.0928 -0.1598 38 1 4.1195 -5.9608 1.2057 39 1 4.7450 -7.7902 -2.9119 40 1 3.4200 -2.6941 -0.1068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:02 Heat of formation + Delta-G solvation = 22.327640 kcal Electronic energy + Delta-G solvation = -18294.705338 eV Core-core repulsion = 15688.108101 eV Total energy + Delta-G solvation = -2606.597237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.18833 -37.10065 -35.05497 -31.62052 -31.09989 -28.64221 -27.46420 -26.70084 -25.47096 -25.08890 -22.19076 -22.12593 -20.31677 -18.64692 -16.14623 -15.85454 -15.33177 -15.26316 -14.81129 -14.58329 -14.06295 -13.45716 -13.13272 -12.75979 -12.42036 -12.29778 -11.98592 -11.71924 -11.66174 -11.57034 -11.34118 -11.25369 -10.90173 -10.83732 -10.58277 -10.38098 -10.31245 -10.10221 -9.51930 -9.23697 -8.82812 -8.31731 -8.30568 -8.02997 -7.65897 -5.94392 -4.03734 2.07918 2.22035 3.30745 3.39225 3.44019 4.08766 4.44166 4.70400 5.10537 5.17517 5.30913 5.32070 5.36529 5.55892 5.58481 5.66086 5.71633 5.82173 5.84476 6.05511 6.10582 6.28090 6.40530 6.65102 6.74990 6.79236 6.95187 7.04408 7.04890 7.07005 7.10940 7.23320 7.32154 7.38015 7.51442 7.72509 7.75469 7.87406 8.12418 8.24365 8.49008 8.96691 9.61058 11.06646 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025996 B = 0.006047 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.836828 B = 4629.336448 C = 4737.798441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.100 3.900 5 C -0.091 4.091 6 C -0.143 4.143 7 C -0.130 4.130 8 C -0.111 4.111 9 C -0.027 4.027 10 C 0.093 3.907 11 C -0.132 4.132 12 C -0.125 4.125 13 C -0.496 4.496 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.109 4.109 22 H 0.063 0.937 23 H 0.019 0.981 24 H 0.078 0.922 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.010 0.990 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.008 0.992 39 H 0.258 0.742 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 11.070 6.528 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.027 4.027 5 C -0.091 4.091 6 C -0.162 4.162 7 C -0.148 4.148 8 C -0.129 4.129 9 C -0.027 4.027 10 C 0.093 3.907 11 C -0.189 4.189 12 C -0.183 4.183 13 C -0.534 4.534 14 H 0.075 0.925 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.128 4.128 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.097 0.903 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.029 0.971 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.293 10.746 6.017 13.042 hybrid contribution -0.855 -0.013 -0.103 0.861 sum -5.147 10.733 5.915 13.292 Atomic orbital electron populations 1.22461 0.87441 1.02992 0.99761 1.61949 1.08129 1.12991 1.43294 1.22381 1.00850 0.88998 1.00058 1.21004 0.99990 0.90863 0.90844 1.19529 0.95551 0.93990 1.00066 1.20690 0.96916 0.95548 1.03032 1.20985 0.99345 0.93780 1.00667 1.21089 0.94286 0.99829 0.97700 1.20640 0.94929 0.94046 0.93042 1.17265 0.90766 0.90301 0.92355 1.21880 0.99645 0.99155 0.98262 1.21799 1.00107 0.99820 0.96582 1.21112 0.97342 1.23962 1.10962 0.92511 1.24904 0.94880 0.96455 0.97426 1.69823 1.09502 1.34773 1.38496 0.86561 0.80067 0.79024 0.82531 1.19841 1.21082 1.21113 1.21097 0.99725 0.93288 0.98650 0.91782 0.96215 0.90334 0.96085 0.91362 0.91513 0.90322 0.94690 0.87889 0.87367 0.86262 0.97053 0.89717 0.95186 0.95432 0.89526 0.97278 0.93131 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.26 60.06 0.56 0.83 16 2 N -0.54 -7.58 5.01 -252.71 -1.27 -8.85 16 3 C 0.03 0.28 9.57 60.07 0.57 0.85 16 4 C 0.10 1.43 5.12 -4.98 -0.03 1.40 16 5 C -0.09 -1.56 4.88 -104.62 -0.51 -2.07 16 6 C -0.14 -2.34 7.92 -39.58 -0.31 -2.65 16 7 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 8 C -0.11 -2.25 8.64 -39.58 -0.34 -2.60 16 9 C -0.03 -0.58 4.72 -104.62 -0.49 -1.08 16 10 C 0.09 2.28 0.58 -156.82 -0.09 2.18 16 11 C -0.13 -3.16 6.91 37.15 0.26 -2.91 16 12 C -0.13 -3.01 8.09 37.16 0.30 -2.71 16 13 C -0.50 -13.28 7.62 -34.44 -0.26 -13.54 16 14 H 0.06 1.56 7.53 -52.48 -0.39 1.16 16 15 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 16 N -0.89 -24.23 9.35 55.43 0.52 -23.71 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.11 -2.18 8.63 -39.58 -0.34 -2.52 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.08 1.12 5.91 -51.93 -0.31 0.81 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 29 H 0.03 0.45 8.06 -51.93 -0.42 0.04 16 30 H 0.10 1.43 8.00 -52.49 -0.42 1.01 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.12 2.46 7.68 -52.49 -0.40 2.05 16 33 H 0.01 0.23 7.39 -51.93 -0.38 -0.15 16 34 H 0.08 2.21 6.08 -51.93 -0.32 1.90 16 35 H 0.03 0.70 7.64 -51.93 -0.40 0.31 16 36 H 0.03 0.63 7.55 -51.93 -0.39 0.24 16 37 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 38 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.12 2.40 5.90 -52.49 -0.31 2.09 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -27.67 313.36 -8.79 -36.47 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.56 Total: 1.08 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -1.18 Total: -25.82 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: -0.75 Total: -32.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.67 -8.79 -36.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.795 kcal (2) G-P(sol) polarization free energy of solvation -27.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds