Wall clock time and date at job start Mon Mar 30 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99933 * 2 1 4 4 C 1.46905 * 110.99799 * 123.95142 * 2 1 3 5 5 C 1.50694 * 109.47008 * 66.05053 * 4 2 1 6 6 C 1.38265 * 119.99872 * 269.72301 * 5 4 2 7 7 C 1.38210 * 119.99846 * 179.78681 * 6 5 4 8 8 C 1.38263 * 120.00222 * 0.44472 * 7 6 5 9 9 C 1.38218 * 119.99827 * 359.80851 * 8 7 6 10 10 C 1.50699 * 119.99793 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.46902 * 177.29970 * 10 9 8 12 12 C 1.53002 * 109.46697 * 297.29337 * 10 9 8 13 13 C 1.50697 * 109.47527 * 57.29454 * 10 9 8 14 14 H 1.08003 * 119.99524 * 0.09434 * 13 10 9 15 15 C 1.37873 * 119.99840 * 180.09645 * 13 10 9 16 16 N 1.31511 * 120.00096 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99741 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47062 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47181 * 119.99972 * 17 15 13 20 20 H 1.48491 * 109.47325 * 239.99806 * 17 15 13 21 21 C 1.38217 * 120.00166 * 89.99378 * 5 4 2 22 22 H 1.08998 * 109.47332 * 59.99875 * 1 2 3 23 23 H 1.09004 * 109.46894 * 299.99929 * 1 2 3 24 24 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47057 * 63.95869 * 3 2 1 26 26 H 1.09004 * 109.47220 * 183.95080 * 3 2 1 27 27 H 1.09000 * 109.47073 * 303.95567 * 3 2 1 28 28 H 1.09007 * 109.46644 * 186.04386 * 4 2 1 29 29 H 1.08996 * 109.47270 * 306.04242 * 4 2 1 30 30 H 1.07992 * 119.99584 * 359.97438 * 6 5 4 31 31 H 1.08000 * 120.00046 * 180.27568 * 7 6 5 32 32 H 1.07997 * 120.00088 * 179.83799 * 8 7 6 33 33 H 1.09003 * 109.47610 * 59.99183 * 11 10 9 34 34 H 1.09003 * 109.47275 * 179.97438 * 11 10 9 35 35 H 1.09007 * 109.47118 * 299.99715 * 11 10 9 36 36 H 1.08997 * 109.47333 * 59.99986 * 12 10 9 37 37 H 1.09004 * 109.47096 * 180.02562 * 12 10 9 38 38 H 1.09009 * 109.47374 * 300.00319 * 12 10 9 39 39 H 0.96999 * 119.99801 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.00098 * 359.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6370 -2.2204 0.9729 6 6 0.4536 -2.7046 1.4991 7 6 0.1227 -4.0375 1.3441 8 6 0.9794 -4.8888 0.6710 9 6 2.1649 -4.4058 0.1496 10 6 3.0984 -5.3335 -0.5846 11 6 4.2944 -4.5396 -1.1138 12 6 3.5914 -6.4220 0.3710 13 6 2.3683 -5.9711 -1.7385 14 1 1.3324 -5.7276 -1.9227 15 6 3.0229 -6.8653 -2.5588 16 7 4.2845 -7.1614 -2.3346 17 14 2.1177 -7.6562 -3.9887 18 1 0.7185 -7.1600 -4.0240 19 1 2.7998 -7.3065 -5.2606 20 1 2.1151 -9.1313 -3.8178 21 6 2.4938 -3.0715 0.3007 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.7044 1.8723 0.9234 26 1 3.0828 1.3433 -0.0708 27 1 1.5897 1.9163 -0.8524 28 1 3.0798 -0.6611 1.1756 29 1 1.5611 -0.3872 2.0628 30 1 -0.2136 -2.0405 2.0284 31 1 -0.8037 -4.4148 1.7512 32 1 0.7221 -5.9309 0.5522 33 1 4.8224 -4.0784 -0.2792 34 1 4.9698 -5.2107 -1.6445 35 1 3.9431 -3.7641 -1.7946 36 1 2.7394 -6.9876 0.7482 37 1 4.2670 -7.0928 -0.1598 38 1 4.1195 -5.9608 1.2057 39 1 4.7450 -7.7902 -2.9119 40 1 3.4200 -2.6941 -0.1068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:02 Heat of formation + Delta-G solvation = 7.860969 kcal Electronic energy + Delta-G solvation = -18295.332660 eV Core-core repulsion = 15688.108101 eV Total energy + Delta-G solvation = -2607.224559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61990 -38.33378 -36.71630 -33.52021 -32.45255 -30.24043 -28.42689 -28.14256 -27.25915 -26.95564 -23.75495 -23.30091 -21.67013 -20.38437 -17.92701 -17.52225 -16.58578 -16.38724 -16.33571 -15.90265 -15.37458 -15.02531 -14.71467 -14.54423 -13.68376 -13.54761 -13.28725 -13.20868 -13.14561 -12.88305 -12.82731 -12.68140 -12.55510 -12.46754 -12.32902 -12.13959 -12.08523 -11.83160 -11.36265 -10.98787 -10.76699 -10.35593 -9.52440 -9.31670 -9.09761 -7.98658 -6.14228 0.64936 0.76764 1.40356 1.43862 1.53718 2.46054 2.94479 3.23533 3.40520 3.93672 4.08573 4.28682 4.33707 4.40547 4.49320 4.52088 4.62426 4.73505 4.77559 4.83988 4.84812 4.88354 4.98543 5.04102 5.07405 5.10536 5.12413 5.35528 5.41597 5.44779 5.63714 5.66915 5.74868 5.83492 5.93592 6.10242 6.17976 6.20132 6.32697 6.39094 6.50296 6.90632 7.52518 9.00189 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025996 B = 0.006047 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.836828 B = 4629.336448 C = 4737.798441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.103 3.897 5 C -0.085 4.085 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.132 4.132 9 C -0.054 4.054 10 C 0.086 3.914 11 C -0.119 4.119 12 C -0.115 4.115 13 C -0.509 4.509 14 H 0.042 0.958 15 C 0.023 3.977 16 N -0.905 5.905 17 Si 0.944 3.056 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.280 1.280 21 C -0.125 4.125 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.025 0.975 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.259 0.741 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.013 12.888 7.510 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.290 5.290 3 C -0.121 4.121 4 C -0.024 4.024 5 C -0.085 4.085 6 C -0.151 4.151 7 C -0.142 4.142 8 C -0.150 4.150 9 C -0.054 4.054 10 C 0.086 3.914 11 C -0.176 4.176 12 C -0.173 4.173 13 C -0.547 4.547 14 H 0.061 0.939 15 C -0.176 4.176 16 N -0.544 5.544 17 Si 0.771 3.229 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.206 1.206 21 C -0.143 4.143 22 H 0.089 0.911 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.123 0.877 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.707 12.570 7.002 15.479 hybrid contribution -0.450 -0.500 -0.369 0.767 sum -6.157 12.070 6.632 15.086 Atomic orbital electron populations 1.22445 0.86810 1.02199 1.01085 1.61900 1.08975 1.14716 1.43390 1.22412 1.00933 0.87568 1.01202 1.20977 1.00434 0.89012 0.91963 1.19846 0.95037 0.95315 0.98333 1.21067 0.96715 0.95473 1.01812 1.21288 0.99652 0.93912 0.99309 1.21076 0.94791 0.99845 0.99282 1.20462 0.95552 0.94625 0.94797 1.17242 0.91237 0.90868 0.92076 1.21705 0.99268 0.98314 0.98352 1.21645 0.99509 0.99465 0.96650 1.21303 0.96889 1.24394 1.12110 0.93947 1.25525 0.95592 0.97016 0.99477 1.69941 1.10312 1.35050 1.39128 0.85715 0.78889 0.78313 0.79971 1.19933 1.20849 1.20586 1.21092 1.00371 0.92968 0.99893 0.91057 0.94346 0.92078 0.94572 0.91234 0.90687 0.90109 0.92602 0.84434 0.84379 0.87681 0.95352 0.92176 0.95943 0.95604 0.91896 0.96019 0.93148 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.26 127.69 1.18 1.69 16 2 N -0.57 -14.33 5.01 -953.45 -4.78 -19.10 16 3 C 0.03 0.50 9.57 127.69 1.22 1.72 16 4 C 0.10 2.65 5.12 85.55 0.44 3.09 16 5 C -0.08 -2.73 4.88 -19.86 -0.10 -2.83 16 6 C -0.13 -3.89 7.92 22.27 0.18 -3.72 16 7 C -0.12 -4.02 10.05 22.27 0.22 -3.79 16 8 C -0.13 -5.34 8.64 22.27 0.19 -5.14 16 9 C -0.05 -2.40 4.72 -19.86 -0.09 -2.50 16 10 C 0.09 4.29 0.58 -53.68 -0.03 4.26 16 11 C -0.12 -5.84 6.91 71.98 0.50 -5.34 16 12 C -0.11 -5.65 8.09 71.98 0.58 -5.06 16 13 C -0.51 -27.97 7.62 25.60 0.20 -27.78 16 14 H 0.04 2.39 7.53 -2.91 -0.02 2.37 16 15 C 0.02 1.24 5.15 84.65 0.44 1.67 16 16 N -0.90 -50.58 9.35 21.45 0.20 -50.38 16 17 Si 0.94 43.95 29.54 68.60 2.03 45.98 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C -0.12 -4.92 8.63 22.27 0.19 -4.73 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 23 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.06 1.57 5.91 -2.39 -0.01 1.55 16 25 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 1.29 8.12 -2.38 -0.02 1.27 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 2.02 8.01 -2.38 -0.02 2.01 16 29 H 0.06 1.21 8.06 -2.39 -0.02 1.19 16 30 H 0.14 3.13 8.00 -2.91 -0.02 3.11 16 31 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 32 H 0.11 4.44 7.68 -2.91 -0.02 4.42 16 33 H 0.03 1.24 7.39 -2.39 -0.02 1.22 16 34 H 0.06 3.23 6.08 -2.39 -0.01 3.21 16 35 H 0.02 1.07 7.64 -2.38 -0.02 1.05 16 36 H 0.02 1.21 7.55 -2.39 -0.02 1.19 16 37 H 0.06 3.36 6.06 -2.38 -0.01 3.35 16 38 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 40 H 0.11 4.51 5.90 -2.91 -0.02 4.50 16 Total: -1.00 -59.80 313.36 3.56 -56.24 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.99 Total: 15.71 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 5.12 Total: -48.46 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -4.58 Total: -69.48 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -59.80 3.56 -56.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.104 kcal (2) G-P(sol) polarization free energy of solvation -59.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds