Wall clock time and date at job start Mon Mar 30 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47499 * 2 1 4 4 C 1.53001 * 109.46686 * 239.99747 * 2 1 3 5 5 C 1.52996 * 109.47307 * 120.00438 * 2 1 3 6 6 C 1.50701 * 109.47421 * 59.99263 * 5 2 1 7 7 C 1.38235 * 119.99864 * 90.00313 * 6 5 2 8 8 C 1.38230 * 120.00080 * 180.02562 * 7 6 5 9 9 C 1.38235 * 120.00296 * 359.95530 * 8 7 6 10 10 C 1.50701 * 120.00138 * 180.02562 * 9 8 7 11 11 H 1.08992 * 109.47217 * 340.00362 * 10 9 8 12 12 N 1.46901 * 109.46883 * 219.99742 * 10 9 8 13 13 C 1.50699 * 109.46837 * 100.00154 * 10 9 8 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.38235 * 119.99778 * 0.27610 * 9 8 7 22 22 C 1.38235 * 120.00370 * 269.98035 * 6 5 2 23 23 H 1.09002 * 109.46989 * 299.99677 * 1 2 3 24 24 H 1.08999 * 109.47462 * 59.99964 * 1 2 3 25 25 H 1.09001 * 109.47432 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47467 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47051 * 300.00376 * 3 2 1 28 28 H 1.09000 * 109.47184 * 59.99890 * 3 2 1 29 29 H 1.08994 * 109.47601 * 299.99938 * 4 2 1 30 30 H 1.09006 * 109.47294 * 60.00540 * 4 2 1 31 31 H 1.09001 * 109.47064 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47002 * 299.99877 * 5 2 1 33 33 H 1.08991 * 109.47518 * 179.97438 * 5 2 1 34 34 H 1.08003 * 119.99873 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.00250 * 179.97438 * 8 7 6 36 36 H 1.00899 * 111.00549 * 300.00105 * 12 10 9 37 37 H 1.00907 * 110.99790 * 63.95798 * 12 10 9 38 38 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 39 39 H 1.07997 * 120.00201 * 179.72563 * 21 9 8 40 40 H 1.08005 * 119.99595 * 0.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2491 6 6 1.5376 -2.1421 1.2492 7 6 2.2846 -3.1394 0.6506 8 6 1.8236 -4.4425 0.6502 9 6 0.6159 -4.7487 1.2491 10 6 0.1136 -6.1695 1.2492 11 1 0.6150 -6.7321 0.4618 12 7 -1.3357 -6.1764 1.0092 13 6 0.4048 -6.8052 2.5841 14 1 0.9033 -6.2370 3.3556 15 6 0.0337 -8.1118 2.8211 16 7 0.2830 -8.6648 3.9880 17 14 -0.8305 -9.0938 1.4875 18 1 0.1804 -9.7930 0.6541 19 1 -1.7322 -10.0933 2.1145 20 1 -1.6265 -8.1757 0.6339 21 6 -0.1334 -3.7506 1.8436 22 6 0.3300 -2.4482 1.8482 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2075 -2.1393 31 1 3.1299 -0.7210 -1.2495 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7217 1.2489 34 1 3.2281 -2.9002 0.1825 35 1 2.4070 -5.2217 0.1821 36 1 -1.8235 -5.6608 1.7264 37 1 -1.5522 -5.8141 0.0927 38 1 0.0184 -9.5828 4.1560 39 1 -1.0790 -3.9890 2.3076 40 1 -0.2536 -1.6690 2.3159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260047361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:11 Heat of formation + Delta-G solvation = 4.985758 kcal Electronic energy + Delta-G solvation = -18056.257223 eV Core-core repulsion = 15448.907985 eV Total energy + Delta-G solvation = -2607.349237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.52363 -37.29731 -34.61160 -31.87409 -30.63059 -30.21518 -27.35156 -27.25679 -26.87168 -25.48820 -22.26503 -21.78406 -19.69072 -18.80028 -16.79805 -15.78187 -15.15683 -15.00157 -14.80534 -14.51399 -14.12400 -13.90220 -13.70200 -12.98221 -12.87942 -12.41006 -12.30339 -12.19948 -12.09342 -11.75592 -11.69434 -11.48392 -11.29129 -10.85683 -10.70453 -10.65465 -10.53420 -10.39345 -10.03169 -9.83554 -9.23088 -8.51363 -8.34131 -7.81256 -7.17459 -5.98002 -4.07787 1.95697 1.96225 3.52543 3.62809 3.94525 4.30799 4.72915 4.76490 4.76542 4.83564 5.28437 5.32864 5.33592 5.45493 5.51778 5.52940 5.57618 5.71184 5.74222 5.77745 5.81360 5.88634 5.93371 5.96829 6.05070 6.13019 6.17210 6.19951 6.34007 6.36614 6.51876 6.64319 6.84787 7.03247 7.07923 7.36149 7.57146 7.67158 8.20002 8.36297 8.72801 9.03148 9.66403 11.11822 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045651 B = 0.004983 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.200053 B = 5617.259581 C = 5683.906753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.065 4.065 6 C -0.102 4.102 7 C -0.117 4.117 8 C -0.121 4.121 9 C -0.067 4.067 10 C 0.217 3.783 11 H 0.043 0.957 12 N -0.834 5.834 13 C -0.518 4.518 14 H 0.068 0.932 15 C 0.084 3.916 16 N -0.901 5.901 17 Si 0.866 3.134 18 H -0.298 1.298 19 H -0.304 1.304 20 H -0.192 1.192 21 C -0.118 4.118 22 C -0.117 4.117 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.329 0.671 37 H 0.307 0.693 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 17.567 -9.382 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.103 4.103 6 C -0.102 4.102 7 C -0.135 4.135 8 C -0.140 4.140 9 C -0.069 4.069 10 C 0.108 3.892 11 H 0.061 0.939 12 N -0.363 5.363 13 C -0.556 4.556 14 H 0.087 0.913 15 C -0.120 4.120 16 N -0.538 5.538 17 Si 0.693 3.307 18 H -0.225 1.225 19 H -0.232 1.232 20 H -0.113 1.113 21 C -0.136 4.136 22 C -0.135 4.135 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.407 16.627 -9.194 19.051 hybrid contribution -0.121 0.332 -0.358 0.503 sum 1.286 16.959 -9.552 19.506 Atomic orbital electron populations 1.21945 0.94625 1.02526 1.00965 1.20475 0.95854 0.94664 0.95330 1.21880 1.00808 0.95622 1.01484 1.21947 1.00573 1.01172 0.96385 1.20597 1.00125 0.92249 0.97282 1.19548 0.95616 0.94676 1.00338 1.20890 0.99276 0.92923 1.00423 1.21046 0.96460 0.95778 1.00669 1.21207 0.94031 0.98279 0.93433 1.18588 0.84982 0.87147 0.98529 0.93878 1.60080 1.10086 1.61012 1.05132 1.20731 1.40086 0.97483 0.97343 0.91348 1.24998 0.93853 0.97489 0.95646 1.69966 1.46699 1.14049 1.23062 0.87212 0.80750 0.78873 0.83819 1.22525 1.23191 1.11333 1.20921 1.00521 0.92373 0.99819 1.20881 0.95992 0.96236 1.00353 0.92999 0.93257 0.91689 0.92812 0.92851 0.92806 0.91669 0.93263 0.92998 0.91579 0.91582 0.87199 0.86654 0.85684 0.88193 0.92831 0.86634 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 7.88 37.16 0.29 -1.22 16 2 C -0.06 -0.65 0.80 -154.51 -0.12 -0.77 16 3 C -0.14 -1.22 8.47 37.16 0.31 -0.90 16 4 C -0.14 -1.51 7.88 37.16 0.29 -1.21 16 5 C -0.07 -0.76 4.46 -27.88 -0.12 -0.89 16 6 C -0.10 -1.49 4.01 -104.62 -0.42 -1.91 16 7 C -0.12 -1.83 7.88 -39.59 -0.31 -2.14 16 8 C -0.12 -2.20 9.67 -39.59 -0.38 -2.59 16 9 C -0.07 -1.35 4.88 -104.62 -0.51 -1.86 16 10 C 0.22 4.93 2.35 -70.02 -0.16 4.77 16 11 H 0.04 1.01 7.43 -51.93 -0.39 0.62 16 12 N -0.83 -17.06 5.65 -6.65 -0.04 -17.09 16 13 C -0.52 -14.53 9.29 -34.44 -0.32 -14.85 16 14 H 0.07 2.14 7.98 -52.49 -0.42 1.72 16 15 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 16 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 17 Si 0.87 21.72 26.94 -169.99 -4.58 17.14 16 18 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 19 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 20 H -0.19 -4.43 5.16 56.52 0.29 -4.13 16 21 C -0.12 -2.14 9.29 -39.58 -0.37 -2.51 16 22 C -0.12 -1.83 7.89 -39.58 -0.31 -2.14 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.79 6.17 -51.93 -0.32 0.47 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.79 6.17 -51.93 -0.32 0.47 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.11 1.48 8.03 -52.48 -0.42 1.06 16 35 H 0.12 2.02 8.04 -52.48 -0.42 1.60 16 36 H 0.33 6.51 7.33 -39.29 -0.29 6.22 16 37 H 0.31 5.45 9.06 -39.29 -0.36 5.09 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.12 2.06 6.65 -52.49 -0.35 1.71 16 40 H 0.11 1.50 8.03 -52.48 -0.42 1.08 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -30.66 312.53 -8.12 -38.78 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.75 Total: 9.64 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -2.23 Total: -25.86 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.74 Total: -44.41 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.58 Total: 17.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.66 -8.12 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.765 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds