Wall clock time and date at job start Mon Mar 30 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47499 * 2 1 4 4 C 1.53001 * 109.46686 * 239.99747 * 2 1 3 5 5 C 1.52996 * 109.47307 * 120.00438 * 2 1 3 6 6 C 1.50701 * 109.47421 * 59.99263 * 5 2 1 7 7 C 1.38235 * 119.99864 * 90.00313 * 6 5 2 8 8 C 1.38230 * 120.00080 * 180.02562 * 7 6 5 9 9 C 1.38235 * 120.00296 * 359.95530 * 8 7 6 10 10 C 1.50701 * 120.00138 * 180.02562 * 9 8 7 11 11 H 1.08992 * 109.47217 * 340.00362 * 10 9 8 12 12 N 1.46901 * 109.46883 * 219.99742 * 10 9 8 13 13 C 1.50699 * 109.46837 * 100.00154 * 10 9 8 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.38235 * 119.99778 * 0.27610 * 9 8 7 22 22 C 1.38235 * 120.00370 * 269.98035 * 6 5 2 23 23 H 1.09002 * 109.46989 * 299.99677 * 1 2 3 24 24 H 1.08999 * 109.47462 * 59.99964 * 1 2 3 25 25 H 1.09001 * 109.47432 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47467 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47051 * 300.00376 * 3 2 1 28 28 H 1.09000 * 109.47184 * 59.99890 * 3 2 1 29 29 H 1.08994 * 109.47601 * 299.99938 * 4 2 1 30 30 H 1.09006 * 109.47294 * 60.00540 * 4 2 1 31 31 H 1.09001 * 109.47064 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47002 * 299.99877 * 5 2 1 33 33 H 1.08991 * 109.47518 * 179.97438 * 5 2 1 34 34 H 1.08003 * 119.99873 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.00250 * 179.97438 * 8 7 6 36 36 H 1.00899 * 111.00549 * 300.00105 * 12 10 9 37 37 H 1.00907 * 110.99790 * 63.95798 * 12 10 9 38 38 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 39 39 H 1.07997 * 120.00201 * 179.72563 * 21 9 8 40 40 H 1.08005 * 119.99595 * 0.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2491 6 6 1.5376 -2.1421 1.2492 7 6 2.2846 -3.1394 0.6506 8 6 1.8236 -4.4425 0.6502 9 6 0.6159 -4.7487 1.2491 10 6 0.1136 -6.1695 1.2492 11 1 0.6150 -6.7321 0.4618 12 7 -1.3357 -6.1764 1.0092 13 6 0.4048 -6.8052 2.5841 14 1 0.9033 -6.2370 3.3556 15 6 0.0337 -8.1118 2.8211 16 7 0.2830 -8.6648 3.9880 17 14 -0.8305 -9.0938 1.4875 18 1 0.1804 -9.7930 0.6541 19 1 -1.7322 -10.0933 2.1145 20 1 -1.6265 -8.1757 0.6339 21 6 -0.1334 -3.7506 1.8436 22 6 0.3300 -2.4482 1.8482 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2075 -2.1393 31 1 3.1299 -0.7210 -1.2495 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7217 1.2489 34 1 3.2281 -2.9002 0.1825 35 1 2.4070 -5.2217 0.1821 36 1 -1.8235 -5.6608 1.7264 37 1 -1.5522 -5.8141 0.0927 38 1 0.0184 -9.5828 4.1560 39 1 -1.0790 -3.9890 2.3076 40 1 -0.2536 -1.6690 2.3159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260047361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:10 Heat of formation + Delta-G solvation = -13.310644 kcal Electronic energy + Delta-G solvation = -18057.050614 eV Core-core repulsion = 15448.907985 eV Total energy + Delta-G solvation = -2608.142629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74912 -38.41523 -36.20768 -33.96806 -31.94245 -31.53631 -28.59837 -28.07020 -28.04976 -27.01067 -23.78294 -23.19449 -21.22419 -19.65439 -18.90988 -17.20466 -16.74001 -16.34265 -15.90883 -15.74942 -15.68513 -15.07405 -14.86019 -14.45359 -14.20362 -14.08684 -13.54793 -13.41266 -13.14796 -13.08692 -12.73680 -12.52543 -12.49954 -12.45273 -12.11328 -11.82221 -11.67635 -11.56666 -11.45109 -11.33384 -11.23426 -10.73178 -9.66946 -9.23417 -8.86067 -8.23699 -6.36724 0.61409 0.62580 1.50981 1.57777 1.94721 2.61492 2.97497 3.15395 3.85320 3.92356 4.01117 4.12892 4.24535 4.25512 4.26154 4.37457 4.56446 4.68375 4.74347 4.82864 4.85295 4.94704 4.98515 5.01069 5.02803 5.14405 5.15356 5.20567 5.30580 5.32528 5.45444 5.51695 5.55862 5.57631 5.66477 5.82879 5.94000 6.14332 6.27380 6.51789 6.78477 7.04543 7.41314 8.89885 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045651 B = 0.004983 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.200053 B = 5617.259581 C = 5683.906753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.144 4.144 5 C -0.065 4.065 6 C -0.089 4.089 7 C -0.114 4.114 8 C -0.136 4.136 9 C -0.099 4.099 10 C 0.226 3.774 11 H 0.038 0.962 12 N -0.835 5.835 13 C -0.514 4.514 14 H 0.020 0.980 15 C 0.024 3.976 16 N -0.954 5.954 17 Si 0.931 3.069 18 H -0.301 1.301 19 H -0.315 1.315 20 H -0.156 1.156 21 C -0.130 4.130 22 C -0.116 4.116 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.334 0.666 37 H 0.329 0.671 38 H 0.262 0.738 39 H 0.112 0.888 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 20.049 -11.286 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.102 4.102 6 C -0.089 4.089 7 C -0.132 4.132 8 C -0.155 4.155 9 C -0.101 4.101 10 C 0.116 3.884 11 H 0.056 0.944 12 N -0.365 5.365 13 C -0.553 4.553 14 H 0.038 0.962 15 C -0.174 4.174 16 N -0.593 5.593 17 Si 0.756 3.244 18 H -0.229 1.229 19 H -0.243 1.243 20 H -0.076 1.076 21 C -0.148 4.148 22 C -0.134 4.134 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.225 19.142 -11.118 22.170 hybrid contribution 0.013 -0.280 0.270 0.389 sum 1.238 18.862 -10.848 21.795 Atomic orbital electron populations 1.21943 0.94854 1.01480 1.01801 1.20457 0.95626 0.95592 0.94307 1.21843 1.01210 0.94223 1.02182 1.21945 1.01073 1.00110 0.96971 1.20686 1.00783 0.90190 0.98547 1.19927 0.94655 0.96202 0.98106 1.21139 1.00154 0.91942 0.99995 1.21168 0.96052 0.97190 1.01101 1.20977 0.95619 0.97126 0.96344 1.18224 0.86346 0.88697 0.95104 0.94364 1.59736 1.08571 1.61576 1.06636 1.20974 1.38510 0.97167 0.98604 0.96178 1.25944 0.94888 0.98836 0.97746 1.70117 1.49146 1.14512 1.25563 0.86286 0.79608 0.77269 0.81196 1.22895 1.24304 1.07620 1.20981 1.00514 0.93274 1.00025 1.21129 0.96561 0.95653 1.00021 0.92319 0.92383 0.93589 0.92196 0.92100 0.92243 0.93585 0.92391 0.92234 0.90651 0.90551 0.84797 0.86795 0.85139 0.85783 0.92964 0.87001 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.88 71.98 0.57 -2.04 16 2 C -0.06 -1.03 0.80 -52.18 -0.04 -1.07 16 3 C -0.14 -1.86 8.47 71.98 0.61 -1.25 16 4 C -0.14 -2.60 7.88 71.98 0.57 -2.03 16 5 C -0.06 -1.30 4.46 29.85 0.13 -1.17 16 6 C -0.09 -2.40 4.01 -19.87 -0.08 -2.48 16 7 C -0.11 -3.37 7.88 22.27 0.18 -3.20 16 8 C -0.14 -4.93 9.67 22.27 0.22 -4.71 16 9 C -0.10 -3.95 4.88 -19.87 -0.10 -4.05 16 10 C 0.23 10.32 2.35 43.42 0.10 10.43 16 11 H 0.04 1.78 7.43 -2.39 -0.02 1.76 16 12 N -0.83 -33.02 5.65 -174.96 -0.99 -34.01 16 13 C -0.51 -29.77 9.29 25.60 0.24 -29.53 16 14 H 0.02 1.32 7.98 -2.91 -0.02 1.29 16 15 C 0.02 1.43 5.47 84.66 0.46 1.89 16 16 N -0.95 -61.78 13.96 21.45 0.30 -61.48 16 17 Si 0.93 45.44 26.94 68.60 1.85 47.29 16 18 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 19 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 20 H -0.16 -6.68 5.16 99.48 0.51 -6.16 16 21 C -0.13 -4.66 9.29 22.27 0.21 -4.46 16 22 C -0.12 -3.44 7.89 22.27 0.18 -3.27 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 1.01 6.17 -2.39 -0.01 1.00 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 1.01 6.17 -2.39 -0.01 0.99 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 33 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 34 H 0.13 3.26 8.03 -2.91 -0.02 3.24 16 35 H 0.11 4.02 8.04 -2.91 -0.02 4.00 16 36 H 0.33 12.93 7.33 -89.69 -0.66 12.27 16 37 H 0.33 10.94 9.06 -89.69 -0.81 10.13 16 38 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.11 4.00 6.65 -2.91 -0.02 3.98 16 40 H 0.13 3.29 8.03 -2.91 -0.02 3.27 16 Total: -1.00 -68.26 312.53 3.75 -64.51 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.65 Total: 30.63 kcal Atomic # 6 Polarization: -50.18 SS G_CDS: 3.24 Total: -46.95 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -0.69 Total: -95.49 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.85 Total: 47.29 kcal Total: -68.26 3.75 -64.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.202 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds