Wall clock time and date at job start Mon Mar 30 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46932 * 2 1 4 4 C 1.53002 * 109.46799 * 239.99983 * 2 1 3 5 5 C 1.53002 * 109.47163 * 119.99998 * 2 1 3 6 6 C 1.50701 * 109.46873 * 59.99858 * 5 2 1 7 7 C 1.38233 * 119.99687 * 90.00075 * 6 5 2 8 8 C 1.38231 * 119.99931 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00265 * 359.96157 * 8 7 6 10 10 C 1.50697 * 120.00513 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.47008 * 20.00258 * 10 9 8 12 12 N 1.46904 * 109.47199 * 139.99614 * 10 9 8 13 13 C 1.50692 * 109.47517 * 259.99790 * 10 9 8 14 14 H 1.08004 * 119.99940 * 354.49480 * 13 10 9 15 15 C 1.37873 * 120.00466 * 174.48831 * 13 10 9 16 16 N 1.31514 * 120.00164 * 163.27920 * 15 13 10 17 17 Si 1.86799 * 119.99694 * 343.28152 * 15 13 10 18 18 H 1.48502 * 109.47013 * 269.99659 * 17 15 13 19 19 H 1.48498 * 109.47464 * 29.99692 * 17 15 13 20 20 H 1.48502 * 109.47134 * 149.99706 * 17 15 13 21 21 C 1.38242 * 119.99691 * 0.27177 * 9 8 7 22 22 C 1.38229 * 119.99938 * 269.97494 * 6 5 2 23 23 H 1.08993 * 109.47313 * 299.99997 * 1 2 3 24 24 H 1.08996 * 109.47110 * 60.00263 * 1 2 3 25 25 H 1.09000 * 109.46881 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46725 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46641 * 299.99793 * 3 2 1 28 28 H 1.08993 * 109.47119 * 59.99883 * 3 2 1 29 29 H 1.08996 * 109.47469 * 299.99433 * 4 2 1 30 30 H 1.09003 * 109.47260 * 60.00304 * 4 2 1 31 31 H 1.09006 * 109.46938 * 179.97438 * 4 2 1 32 32 H 1.08995 * 109.46588 * 299.99874 * 5 2 1 33 33 H 1.08992 * 109.46626 * 179.97438 * 5 2 1 34 34 H 1.08004 * 120.00456 * 359.97438 * 7 6 5 35 35 H 1.08006 * 120.00342 * 179.97438 * 8 7 6 36 36 H 1.00904 * 110.99471 * 65.65140 * 12 10 9 37 37 H 1.00901 * 110.99943 * 189.60025 * 12 10 9 38 38 H 0.96998 * 120.00160 * 358.89042 * 16 15 13 39 39 H 1.08000 * 119.99957 * 179.73389 * 21 9 8 40 40 H 1.07998 * 120.00544 * 0.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -2.1421 1.2492 7 6 2.2847 -3.1392 0.6506 8 6 1.8242 -4.4426 0.6510 9 6 0.6170 -4.7490 1.2507 10 6 0.1146 -6.1697 1.2507 11 1 0.9475 -6.8496 1.0711 12 7 -0.4938 -6.4740 2.5527 13 6 -0.9150 -6.3385 0.1634 14 1 -1.2445 -5.4819 -0.4060 15 6 -1.4364 -7.5864 -0.1047 16 7 -2.5464 -7.6996 -0.8009 17 14 -0.5663 -9.1163 0.5211 18 1 0.4119 -9.5801 -0.4954 19 1 0.1461 -8.7987 1.7848 20 1 -1.5651 -10.1863 0.7715 21 6 -0.1324 -3.7509 1.8451 22 6 0.3301 -2.4482 1.8482 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2495 32 1 1.6767 -0.2074 2.1391 33 1 3.1300 -0.7216 1.2489 34 1 3.2283 -2.9001 0.1826 35 1 2.4077 -5.2217 0.1830 36 1 -1.3237 -5.9200 2.7023 37 1 -0.6967 -7.4589 2.6357 38 1 -3.0070 -6.9046 -1.1121 39 1 -1.0776 -3.9895 2.3099 40 1 -0.2536 -1.6691 2.3159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260047363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:13 Heat of formation + Delta-G solvation = -22.753622 kcal Electronic energy + Delta-G solvation = -18105.169411 eV Core-core repulsion = 15496.617304 eV Total energy + Delta-G solvation = -2608.552107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70862 -38.39565 -36.39200 -33.99227 -31.96795 -31.61340 -28.38209 -28.11607 -28.04058 -26.79525 -23.66593 -23.25465 -21.16854 -19.83049 -19.66890 -17.63254 -16.54969 -16.06672 -15.87303 -15.63089 -15.45116 -15.12633 -14.93390 -14.66184 -14.33471 -14.14906 -13.79863 -13.25726 -13.14699 -13.05240 -12.73440 -12.58161 -12.49162 -12.38541 -12.01859 -11.81280 -11.62217 -11.57673 -11.46782 -11.41885 -11.24014 -10.64595 -9.66644 -9.54571 -9.28691 -8.63818 -6.50134 0.64062 0.66735 1.43475 1.47096 1.66374 2.40074 2.96881 3.01526 3.85586 3.91699 4.00144 4.06452 4.12861 4.26085 4.32466 4.46280 4.55890 4.66979 4.75307 4.78636 4.84352 4.90729 4.96169 4.98947 5.02176 5.12556 5.13102 5.19871 5.28679 5.34633 5.44992 5.48061 5.56696 5.67113 5.71435 5.83784 5.91369 6.02945 6.29753 6.38079 6.54600 6.80022 7.30359 8.51652 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.036872 B = 0.005297 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.209544 B = 5284.858452 C = 5412.193837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.145 4.145 5 C -0.061 4.061 6 C -0.092 4.092 7 C -0.113 4.113 8 C -0.143 4.143 9 C -0.057 4.057 10 C 0.216 3.784 11 H 0.039 0.961 12 N -0.842 5.842 13 C -0.621 4.621 14 H 0.010 0.990 15 C -0.017 4.017 16 N -0.930 5.930 17 Si 1.089 2.911 18 H -0.274 1.274 19 H -0.239 1.239 20 H -0.282 1.282 21 C -0.125 4.125 22 C -0.117 4.117 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.329 0.671 37 H 0.328 0.672 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.752 15.078 4.325 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.202 4.202 5 C -0.098 4.098 6 C -0.092 4.092 7 C -0.131 4.131 8 C -0.162 4.162 9 C -0.057 4.057 10 C 0.105 3.895 11 H 0.057 0.943 12 N -0.372 5.372 13 C -0.661 4.661 14 H 0.029 0.971 15 C -0.217 4.217 16 N -0.565 5.565 17 Si 0.910 3.090 18 H -0.200 1.200 19 H -0.163 1.163 20 H -0.208 1.208 21 C -0.144 4.144 22 C -0.135 4.135 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.367 13.711 4.654 18.408 hybrid contribution -1.584 1.009 -1.236 2.248 sum 9.783 14.720 3.418 18.002 Atomic orbital electron populations 1.21955 0.95500 1.00978 1.01799 1.20470 0.95107 0.95954 0.94521 1.21825 1.01402 0.93814 1.02184 1.21957 1.01347 0.99781 0.97133 1.20665 1.01034 0.89890 0.98243 1.19920 0.94647 0.96308 0.98342 1.21112 1.00425 0.91694 0.99829 1.21126 0.96289 0.97713 1.01071 1.20036 0.94143 0.95909 0.95647 1.18171 0.93534 0.90899 0.86852 0.94261 1.59694 1.33919 1.10273 1.33309 1.22721 1.26183 0.95077 1.22090 0.97109 1.27320 0.94739 1.04753 0.94851 1.70952 1.15676 1.32429 1.37435 0.83472 0.75585 0.71976 0.78006 1.19973 1.16336 1.20804 1.20908 0.99507 0.93352 1.00597 1.21125 0.96605 0.95378 1.00421 0.91842 0.92794 0.94518 0.91743 0.92442 0.91919 0.94342 0.92817 0.91578 0.90218 0.89908 0.84473 0.86702 0.85986 0.85854 0.93902 0.87795 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 7.88 71.98 0.57 -2.73 16 2 C -0.06 -1.21 0.80 -52.18 -0.04 -1.25 16 3 C -0.14 -2.03 8.47 71.98 0.61 -1.42 16 4 C -0.14 -3.19 7.88 71.98 0.57 -2.63 16 5 C -0.06 -1.28 4.46 29.85 0.13 -1.15 16 6 C -0.09 -2.66 4.01 -19.87 -0.08 -2.74 16 7 C -0.11 -3.52 7.88 22.27 0.18 -3.35 16 8 C -0.14 -5.53 9.67 22.27 0.22 -5.31 16 9 C -0.06 -2.48 4.90 -19.87 -0.10 -2.58 16 10 C 0.22 10.36 2.41 43.42 0.10 10.47 16 11 H 0.04 1.89 6.58 -2.38 -0.02 1.87 16 12 N -0.84 -36.94 8.94 -174.95 -1.56 -38.51 16 13 C -0.62 -35.38 8.94 25.60 0.23 -35.15 16 14 H 0.01 0.68 7.99 -2.91 -0.02 0.66 16 15 C -0.02 -0.99 5.43 84.65 0.46 -0.53 16 16 N -0.93 -57.87 13.70 21.45 0.29 -57.58 16 17 Si 1.09 48.80 26.56 68.60 1.82 50.62 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.24 -9.48 5.50 99.48 0.55 -8.93 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 C -0.13 -5.01 9.31 22.27 0.21 -4.80 16 22 C -0.12 -3.81 7.89 22.27 0.18 -3.64 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 1.05 6.18 -2.39 -0.01 1.03 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 1.06 6.17 -2.39 -0.01 1.04 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 34 H 0.14 3.47 8.03 -2.91 -0.02 3.45 16 35 H 0.11 4.24 8.04 -2.91 -0.02 4.22 16 36 H 0.33 14.27 7.54 -89.69 -0.68 13.60 16 37 H 0.33 13.95 5.82 -89.69 -0.52 13.43 16 38 H 0.25 16.08 8.72 -92.71 -0.81 15.28 16 39 H 0.10 4.23 6.80 -2.91 -0.02 4.21 16 40 H 0.13 3.59 8.03 -2.91 -0.02 3.56 16 Total: -1.00 -65.11 311.90 3.40 -61.72 By element: Atomic # 1 Polarization: 40.93 SS G_CDS: -0.38 Total: 40.55 kcal Atomic # 6 Polarization: -60.03 SS G_CDS: 3.23 Total: -56.80 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -1.27 Total: -96.09 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.82 Total: 50.62 kcal Total: -65.11 3.40 -61.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.963 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds