Wall clock time and date at job start Mon Mar 30 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99867 * 2 1 4 4 C 1.46901 * 110.99663 * 123.94949 * 2 1 3 5 5 C 1.50704 * 109.46868 * 66.05012 * 4 2 1 6 6 C 1.38264 * 119.99615 * 266.07479 * 5 4 2 7 7 C 1.38218 * 119.99491 * 179.72260 * 6 5 4 8 8 C 1.38250 * 120.00185 * 0.27857 * 7 6 5 9 9 C 1.38214 * 120.00209 * 359.97438 * 8 7 6 10 10 C 1.38207 * 120.00267 * 86.27110 * 5 4 2 11 11 C 1.50703 * 120.00029 * 0.03804 * 10 5 4 12 12 C 1.53003 * 109.47275 * 177.74687 * 11 10 5 13 13 C 1.53000 * 109.47002 * 297.74602 * 11 10 5 14 14 C 1.50698 * 109.47088 * 57.74640 * 11 10 5 15 15 H 1.07998 * 119.99760 * 4.70525 * 14 11 10 16 16 C 1.37878 * 119.99949 * 184.70705 * 14 11 10 17 17 N 1.31509 * 120.00081 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99913 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47071 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47182 * 119.99682 * 18 16 14 21 21 H 1.48494 * 109.47003 * 239.99742 * 18 16 14 22 22 H 1.09005 * 109.47195 * 296.04537 * 1 2 3 23 23 H 1.09001 * 109.47173 * 56.04453 * 1 2 3 24 24 H 1.09000 * 109.47329 * 176.04725 * 1 2 3 25 25 H 1.09001 * 109.46911 * 183.95076 * 3 2 1 26 26 H 1.08998 * 109.46873 * 303.95026 * 3 2 1 27 27 H 1.09000 * 109.47274 * 63.95336 * 3 2 1 28 28 H 1.08999 * 109.47259 * 306.04531 * 4 2 1 29 29 H 1.09002 * 109.46736 * 186.04289 * 4 2 1 30 30 H 1.07996 * 119.99952 * 0.02562 * 6 5 4 31 31 H 1.08002 * 119.99537 * 180.25574 * 7 6 5 32 32 H 1.07996 * 119.99953 * 179.97438 * 8 7 6 33 33 H 1.08003 * 120.00296 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.47043 * 57.33534 * 12 11 10 35 35 H 1.08997 * 109.47164 * 177.33380 * 12 11 10 36 36 H 1.09000 * 109.46964 * 297.33980 * 12 11 10 37 37 H 1.08995 * 109.47031 * 78.46466 * 13 11 10 38 38 H 1.09002 * 109.47116 * 198.45993 * 13 11 10 39 39 H 1.08998 * 109.47125 * 318.46206 * 13 11 10 40 40 H 0.97001 * 120.00145 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6369 -2.2204 0.9729 6 6 0.4912 -2.7211 1.5632 7 6 0.1594 -4.0537 1.4073 8 6 0.9760 -4.8873 0.6660 9 6 2.1241 -4.3880 0.0803 10 6 2.4554 -3.0547 0.2352 11 6 3.7069 -2.5101 -0.4037 12 6 4.4544 -3.6438 -1.1087 13 6 3.3315 -1.4343 -1.4249 14 6 4.5918 -1.9085 0.6575 15 1 4.3157 -1.9865 1.6986 16 6 5.7537 -1.2585 0.2991 17 7 6.0900 -1.1639 -0.9688 18 14 6.8510 -0.5134 1.6145 19 1 6.2537 -0.7552 2.9525 20 1 8.1954 -1.1408 1.5514 21 1 6.9756 0.9484 1.3854 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9163 -0.8525 27 1 1.7044 1.8724 0.9233 28 1 1.5610 -0.3871 2.0628 29 1 3.0797 -0.6611 1.1757 30 1 -0.1469 -2.0698 2.1419 31 1 -0.7377 -4.4439 1.8649 32 1 0.7170 -5.9287 0.5446 33 1 2.7623 -5.0393 -0.4984 34 1 3.7982 -4.1098 -1.8436 35 1 5.3345 -3.2417 -1.6106 36 1 4.7631 -4.3874 -0.3739 37 1 3.1044 -0.5036 -0.9052 38 1 4.1659 -1.2748 -2.1079 39 1 2.4570 -1.7583 -1.9891 40 1 6.9073 -0.7063 -1.2210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260120777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:05 Heat of formation + Delta-G solvation = 39.861986 kcal Electronic energy + Delta-G solvation = -19340.203635 eV Core-core repulsion = 16734.366745 eV Total energy + Delta-G solvation = -2605.836891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.35492 -36.41429 -35.12714 -31.56209 -30.99786 -28.54812 -27.23272 -26.12888 -25.33356 -25.08033 -22.14116 -21.68126 -20.05635 -18.66080 -16.36857 -15.77980 -14.94893 -14.81059 -14.56385 -14.21789 -13.93596 -13.45804 -13.11363 -12.58746 -12.16758 -11.83865 -11.82545 -11.58582 -11.43897 -11.18244 -11.11508 -10.86096 -10.77232 -10.71857 -10.47827 -10.26605 -10.13882 -10.09160 -9.29170 -9.06489 -8.68336 -8.31057 -8.07731 -7.64488 -7.47304 -5.95302 -4.01473 2.11783 2.26869 3.26662 3.36425 3.39777 4.37006 4.46826 4.91596 5.28435 5.52897 5.56078 5.65815 5.71148 5.73646 5.82258 5.93697 6.02079 6.15280 6.26439 6.29622 6.42297 6.46103 6.65374 6.79646 6.89759 6.98525 7.05234 7.14002 7.18210 7.28488 7.40848 7.55157 7.65495 7.66636 7.73901 7.84217 7.89443 7.94311 8.27793 8.39829 8.53938 8.96577 9.58390 11.05892 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019002 B = 0.010623 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.143128 B = 2635.237378 C = 3313.807775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.520 5.520 3 C 0.026 3.974 4 C 0.071 3.929 5 C -0.069 4.069 6 C -0.124 4.124 7 C -0.153 4.153 8 C -0.128 4.128 9 C -0.138 4.138 10 C -0.008 4.008 11 C 0.094 3.906 12 C -0.129 4.129 13 C -0.120 4.120 14 C -0.499 4.499 15 H 0.056 0.944 16 C 0.069 3.931 17 N -0.875 5.875 18 Si 0.880 3.120 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.013 0.987 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.016 0.984 29 H 0.140 0.860 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.011 0.989 35 H 0.074 0.926 36 H 0.026 0.974 37 H 0.079 0.921 38 H 0.060 0.940 39 H -0.001 1.001 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.535 0.250 1.994 8.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.122 4.122 4 C -0.055 4.055 5 C -0.070 4.070 6 C -0.143 4.143 7 C -0.171 4.171 8 C -0.146 4.146 9 C -0.156 4.156 10 C -0.009 4.009 11 C 0.094 3.906 12 C -0.187 4.187 13 C -0.177 4.177 14 C -0.537 4.537 15 H 0.074 0.926 16 C -0.133 4.133 17 N -0.513 5.513 18 Si 0.708 3.292 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.032 0.968 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.157 0.843 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.030 0.970 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.018 0.982 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.225 0.123 1.443 8.352 hybrid contribution 0.209 0.629 1.514 1.652 sum -8.016 0.752 2.956 8.577 Atomic orbital electron populations 1.22454 0.89368 1.01965 0.99016 1.62242 1.06065 1.12681 1.43284 1.22357 1.01933 0.88847 0.99075 1.21761 1.05489 0.89278 0.88940 1.19518 0.94167 0.95450 0.97821 1.20937 0.97086 0.95297 1.00947 1.20783 1.00074 0.94135 1.02092 1.20984 0.95821 0.98723 0.99097 1.21278 0.97001 0.96163 1.01128 1.20510 0.95901 0.91915 0.92552 1.17290 0.87189 0.92616 0.93496 1.21897 1.00957 0.97775 0.98078 1.22052 0.97089 0.99991 0.98614 1.20979 1.05380 1.34954 0.92377 0.92553 1.24884 0.97261 0.96128 0.95004 1.69945 1.23951 1.42487 1.14925 0.86719 0.81026 0.78988 0.82440 1.19814 1.21073 1.21050 0.96821 0.92398 0.91376 0.90352 0.92154 0.96705 0.96564 0.84305 0.87797 0.87646 0.87533 0.86231 0.96976 0.90686 0.95499 0.90282 0.92125 0.98232 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.20 60.07 0.55 0.87 16 2 N -0.52 -9.46 2.68 -252.71 -0.68 -10.14 16 3 C 0.03 0.43 8.90 60.07 0.53 0.96 16 4 C 0.07 1.40 3.91 -4.97 -0.02 1.38 16 5 C -0.07 -1.40 4.47 -104.62 -0.47 -1.86 16 6 C -0.12 -2.21 8.26 -39.58 -0.33 -2.53 16 7 C -0.15 -2.56 10.05 -39.58 -0.40 -2.95 16 8 C -0.13 -2.23 10.05 -39.59 -0.40 -2.63 16 9 C -0.14 -2.75 8.99 -39.58 -0.36 -3.11 16 10 C -0.01 -0.18 4.63 -104.62 -0.48 -0.66 16 11 C 0.09 2.24 0.48 -156.81 -0.08 2.17 16 12 C -0.13 -3.05 6.88 37.16 0.26 -2.80 16 13 C -0.12 -2.87 6.94 37.16 0.26 -2.61 16 14 C -0.50 -12.68 5.21 -34.44 -0.18 -12.86 16 15 H 0.06 1.47 7.07 -52.49 -0.37 1.10 16 16 C 0.07 1.79 5.15 -17.82 -0.09 1.69 16 17 N -0.88 -23.18 9.69 55.43 0.54 -22.64 16 18 Si 0.88 20.23 29.54 -169.99 -5.02 15.20 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 24 H 0.07 1.11 6.36 -51.93 -0.33 0.78 16 25 H 0.08 1.42 7.49 -51.93 -0.39 1.03 16 26 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.02 0.30 8.04 -51.93 -0.42 -0.12 16 29 H 0.14 3.12 3.98 -51.93 -0.21 2.92 16 30 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.12 2.31 5.89 -52.48 -0.31 2.00 16 34 H 0.01 0.25 7.22 -51.93 -0.38 -0.13 16 35 H 0.07 1.92 6.46 -51.93 -0.34 1.58 16 36 H 0.03 0.61 7.78 -51.93 -0.40 0.21 16 37 H 0.08 1.84 3.03 -51.93 -0.16 1.68 16 38 H 0.06 1.57 6.40 -51.93 -0.33 1.24 16 39 H 0.00 -0.03 8.00 -51.93 -0.42 -0.45 16 40 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 299.06 15.07 4.51 4.51 Total: -1.00 -26.32 299.06 -7.99 -34.31 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.14 Total: 3.70 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -1.20 Total: -24.94 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: -0.14 Total: -32.78 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.32 -7.99 -34.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.170 kcal (2) G-P(sol) polarization free energy of solvation -26.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds