Wall clock time and date at job start Mon Mar 30 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99867 * 2 1 4 4 C 1.46901 * 110.99663 * 123.94949 * 2 1 3 5 5 C 1.50704 * 109.46868 * 66.05012 * 4 2 1 6 6 C 1.38264 * 119.99615 * 266.07479 * 5 4 2 7 7 C 1.38218 * 119.99491 * 179.72260 * 6 5 4 8 8 C 1.38250 * 120.00185 * 0.27857 * 7 6 5 9 9 C 1.38214 * 120.00209 * 359.97438 * 8 7 6 10 10 C 1.38207 * 120.00267 * 86.27110 * 5 4 2 11 11 C 1.50703 * 120.00029 * 0.03804 * 10 5 4 12 12 C 1.53003 * 109.47275 * 177.74687 * 11 10 5 13 13 C 1.53000 * 109.47002 * 297.74602 * 11 10 5 14 14 C 1.50698 * 109.47088 * 57.74640 * 11 10 5 15 15 H 1.07998 * 119.99760 * 4.70525 * 14 11 10 16 16 C 1.37878 * 119.99949 * 184.70705 * 14 11 10 17 17 N 1.31509 * 120.00081 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99913 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47071 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47182 * 119.99682 * 18 16 14 21 21 H 1.48494 * 109.47003 * 239.99742 * 18 16 14 22 22 H 1.09005 * 109.47195 * 296.04537 * 1 2 3 23 23 H 1.09001 * 109.47173 * 56.04453 * 1 2 3 24 24 H 1.09000 * 109.47329 * 176.04725 * 1 2 3 25 25 H 1.09001 * 109.46911 * 183.95076 * 3 2 1 26 26 H 1.08998 * 109.46873 * 303.95026 * 3 2 1 27 27 H 1.09000 * 109.47274 * 63.95336 * 3 2 1 28 28 H 1.08999 * 109.47259 * 306.04531 * 4 2 1 29 29 H 1.09002 * 109.46736 * 186.04289 * 4 2 1 30 30 H 1.07996 * 119.99952 * 0.02562 * 6 5 4 31 31 H 1.08002 * 119.99537 * 180.25574 * 7 6 5 32 32 H 1.07996 * 119.99953 * 179.97438 * 8 7 6 33 33 H 1.08003 * 120.00296 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.47043 * 57.33534 * 12 11 10 35 35 H 1.08997 * 109.47164 * 177.33380 * 12 11 10 36 36 H 1.09000 * 109.46964 * 297.33980 * 12 11 10 37 37 H 1.08995 * 109.47031 * 78.46466 * 13 11 10 38 38 H 1.09002 * 109.47116 * 198.45993 * 13 11 10 39 39 H 1.08998 * 109.47125 * 318.46206 * 13 11 10 40 40 H 0.97001 * 120.00145 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6369 -2.2204 0.9729 6 6 0.4912 -2.7211 1.5632 7 6 0.1594 -4.0537 1.4073 8 6 0.9760 -4.8873 0.6660 9 6 2.1241 -4.3880 0.0803 10 6 2.4554 -3.0547 0.2352 11 6 3.7069 -2.5101 -0.4037 12 6 4.4544 -3.6438 -1.1087 13 6 3.3315 -1.4343 -1.4249 14 6 4.5918 -1.9085 0.6575 15 1 4.3157 -1.9865 1.6986 16 6 5.7537 -1.2585 0.2991 17 7 6.0900 -1.1639 -0.9688 18 14 6.8510 -0.5134 1.6145 19 1 6.2537 -0.7552 2.9525 20 1 8.1954 -1.1408 1.5514 21 1 6.9756 0.9484 1.3854 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9163 -0.8525 27 1 1.7044 1.8724 0.9233 28 1 1.5610 -0.3871 2.0628 29 1 3.0797 -0.6611 1.1757 30 1 -0.1469 -2.0698 2.1419 31 1 -0.7377 -4.4439 1.8649 32 1 0.7170 -5.9287 0.5446 33 1 2.7623 -5.0393 -0.4984 34 1 3.7982 -4.1098 -1.8436 35 1 5.3345 -3.2417 -1.6106 36 1 4.7631 -4.3874 -0.3739 37 1 3.1044 -0.5036 -0.9052 38 1 4.1659 -1.2748 -2.1079 39 1 2.4570 -1.7583 -1.9891 40 1 6.9073 -0.7063 -1.2210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260120777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:04 Heat of formation + Delta-G solvation = 27.835436 kcal Electronic energy + Delta-G solvation = -19340.725146 eV Core-core repulsion = 16734.366745 eV Total energy + Delta-G solvation = -2606.358401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86659 -37.79193 -36.88043 -33.42843 -32.43022 -30.13536 -28.58320 -27.63521 -27.16594 -26.96016 -23.67786 -23.10061 -21.55769 -20.34690 -18.17329 -17.32707 -16.53699 -16.39750 -16.05915 -15.69670 -15.34583 -14.93457 -14.78596 -14.32326 -13.58626 -13.45983 -13.21264 -13.10515 -13.01253 -12.83965 -12.70062 -12.57475 -12.40682 -12.32919 -12.21335 -12.11011 -11.93479 -11.63335 -11.13691 -10.78871 -10.57532 -10.26596 -9.50292 -9.14932 -8.88702 -7.92119 -6.02264 0.69116 0.82292 1.41090 1.46560 1.54242 2.48881 3.02518 3.29702 3.52275 4.16156 4.18799 4.35556 4.40903 4.41507 4.54214 4.56091 4.71694 4.78835 4.84791 4.95354 4.99614 5.07895 5.09209 5.12163 5.16003 5.28504 5.34034 5.51718 5.55487 5.67646 5.76341 5.83950 5.84673 5.88846 6.05417 6.26663 6.30279 6.40999 6.43901 6.55354 6.63076 7.00376 7.58687 9.07681 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019002 B = 0.010623 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.143128 B = 2635.237378 C = 3313.807775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.030 3.970 4 C 0.078 3.922 5 C -0.083 4.083 6 C -0.124 4.124 7 C -0.143 4.143 8 C -0.125 4.125 9 C -0.155 4.155 10 C -0.042 4.042 11 C 0.090 3.910 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.496 4.496 15 H 0.045 0.955 16 C 0.030 3.970 17 N -0.898 5.898 18 Si 0.931 3.069 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.281 1.281 22 H 0.029 0.971 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.116 0.884 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.023 0.977 37 H 0.083 0.917 38 H 0.032 0.968 39 H -0.005 1.005 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 -0.033 3.227 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.118 4.118 4 C -0.048 4.048 5 C -0.084 4.084 6 C -0.142 4.142 7 C -0.161 4.161 8 C -0.143 4.143 9 C -0.173 4.173 10 C -0.042 4.042 11 C 0.090 3.910 12 C -0.177 4.177 13 C -0.161 4.161 14 C -0.534 4.534 15 H 0.063 0.937 16 C -0.170 4.170 17 N -0.537 5.537 18 Si 0.759 3.241 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.207 1.207 22 H 0.047 0.953 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.014 0.986 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.521 -0.159 2.681 10.858 hybrid contribution 0.828 0.685 1.144 1.570 sum -9.692 0.525 3.825 10.433 Atomic orbital electron populations 1.22432 0.87425 1.01963 1.00454 1.62124 1.07914 1.13406 1.42929 1.22313 1.00318 0.88514 1.00686 1.21503 1.03511 0.89809 0.90003 1.19637 0.95074 0.95405 0.98251 1.21197 0.96309 0.96329 1.00378 1.21232 1.00730 0.93448 1.00657 1.21322 0.94573 1.00446 0.98004 1.21377 0.98371 0.95502 1.02005 1.20397 0.95903 0.93277 0.94664 1.17224 0.88330 0.92317 0.93110 1.21761 1.00135 0.97752 0.98040 1.21882 0.95508 1.00624 0.98066 1.21082 1.05588 1.34547 0.92208 0.93713 1.25417 0.98386 0.96776 0.96378 1.70066 1.24219 1.43335 1.16099 0.85916 0.79295 0.78331 0.80585 1.19669 1.21405 1.20742 0.95273 0.90928 0.92086 0.93010 0.90347 0.95125 0.95475 0.87616 0.85458 0.83871 0.84388 0.86568 0.95711 0.93255 0.95778 0.89830 0.94925 0.98593 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.20 127.69 1.17 1.89 16 2 N -0.54 -19.09 2.68 -953.44 -2.55 -21.64 16 3 C 0.03 0.94 8.90 127.69 1.14 2.08 16 4 C 0.08 3.02 3.91 85.56 0.33 3.36 16 5 C -0.08 -3.26 4.47 -19.86 -0.09 -3.35 16 6 C -0.12 -4.01 8.26 22.27 0.18 -3.83 16 7 C -0.14 -4.18 10.05 22.27 0.22 -3.96 16 8 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 9 C -0.15 -6.00 8.99 22.27 0.20 -5.80 16 10 C -0.04 -1.82 4.63 -19.87 -0.09 -1.91 16 11 C 0.09 4.39 0.48 -53.67 -0.03 4.37 16 12 C -0.12 -5.78 6.88 71.98 0.49 -5.29 16 13 C -0.10 -5.07 6.94 71.98 0.50 -4.57 16 14 C -0.50 -25.81 5.21 25.60 0.13 -25.68 16 15 H 0.04 2.39 7.07 -2.91 -0.02 2.37 16 16 C 0.03 1.58 5.15 84.66 0.44 2.02 16 17 N -0.90 -49.14 9.69 21.45 0.21 -48.94 16 18 Si 0.93 42.35 29.54 68.60 2.03 44.37 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 23 H 0.07 1.84 8.12 -2.39 -0.02 1.83 16 24 H 0.06 1.83 6.36 -2.39 -0.02 1.81 16 25 H 0.05 1.91 7.49 -2.39 -0.02 1.89 16 26 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.03 0.96 8.04 -2.39 -0.02 0.94 16 29 H 0.11 4.83 3.98 -2.39 -0.01 4.82 16 30 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 31 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.12 4.44 5.89 -2.91 -0.02 4.43 16 34 H 0.02 1.08 7.22 -2.39 -0.02 1.06 16 35 H 0.05 2.61 6.46 -2.39 -0.02 2.60 16 36 H 0.02 1.12 7.78 -2.39 -0.02 1.10 16 37 H 0.08 4.00 3.03 -2.39 -0.01 3.99 16 38 H 0.03 1.74 6.40 -2.39 -0.02 1.72 16 39 H -0.01 -0.25 8.00 -2.39 -0.02 -0.26 16 40 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -57.15 299.06 5.52 -51.62 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.01 Total: 18.98 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 4.83 Total: -44.40 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -2.35 Total: -70.58 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -57.15 5.52 -51.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.460 kcal (2) G-P(sol) polarization free energy of solvation -57.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds