Wall clock time and date at job start Mon Mar 30 2020 05:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47048 * 2 1 4 4 C 1.38236 * 120.00130 * 280.56343 * 3 2 1 5 5 C 1.38238 * 119.99937 * 180.25167 * 4 3 2 6 6 C 1.38235 * 119.99998 * 359.76899 * 5 4 3 7 7 C 1.38235 * 120.00007 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99983 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47545 * 264.98180 * 8 7 6 10 10 C 1.38233 * 120.00010 * 359.96142 * 7 6 5 11 11 C 1.50700 * 119.99843 * 180.02562 * 10 7 6 12 12 H 1.09001 * 109.47656 * 9.70902 * 11 10 7 13 13 N 1.46908 * 109.47015 * 129.70530 * 11 10 7 14 14 C 1.52996 * 109.47296 * 249.70412 * 11 10 7 15 15 C 1.50697 * 109.47434 * 174.93657 * 14 11 10 16 16 H 1.07999 * 120.00063 * 0.02562 * 15 14 11 17 17 C 1.37886 * 120.00161 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00191 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99839 * 0.02562 * 17 15 14 20 20 H 1.48489 * 109.47413 * 89.99540 * 19 17 15 21 21 H 1.48503 * 109.47164 * 210.00048 * 19 17 15 22 22 H 1.48504 * 109.46950 * 329.99505 * 19 17 15 23 23 H 1.08994 * 109.47262 * 186.99630 * 1 2 3 24 24 H 1.08998 * 109.47310 * 307.00021 * 1 2 3 25 25 H 1.08998 * 109.46789 * 66.99262 * 1 2 3 26 26 H 1.09000 * 109.47454 * 240.00251 * 2 1 3 27 27 H 1.09001 * 109.47332 * 119.99443 * 2 1 3 28 28 H 1.07998 * 119.99948 * 0.04640 * 4 3 2 29 29 H 1.07998 * 120.00086 * 179.79564 * 5 4 3 30 30 H 1.08001 * 120.00005 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47137 * 24.98490 * 8 7 6 32 32 H 1.09005 * 109.47153 * 144.98048 * 8 7 6 33 33 H 1.09002 * 109.46777 * 60.00245 * 9 8 7 34 34 H 1.09000 * 109.47160 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.47014 * 299.99982 * 9 8 7 36 36 H 1.00899 * 111.00038 * 310.05774 * 13 11 10 37 37 H 1.00898 * 110.99704 * 74.01334 * 13 11 10 38 38 H 1.08997 * 109.47192 * 54.93832 * 14 11 10 39 39 H 1.09003 * 109.47464 * 294.93919 * 14 11 10 40 40 H 0.96999 * 120.00525 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.0558 2.1457 -1.1769 5 6 2.5214 3.4473 -1.1778 6 6 2.9591 4.0256 -0.0010 7 6 2.9317 3.3022 1.1766 8 6 3.4094 3.9325 2.4595 9 6 4.8754 3.5630 2.6943 10 6 2.4658 2.0007 1.1776 11 6 2.4353 1.2123 2.4616 12 1 2.6499 1.8749 3.3001 13 7 1.1049 0.6147 2.6378 14 6 3.4886 0.1041 2.4047 15 6 3.5443 -0.6047 3.7334 16 1 2.8933 -0.2960 4.5378 17 6 4.4258 -1.6482 3.9217 18 7 4.4741 -2.2671 5.0811 19 14 5.5515 -2.1826 2.5301 20 1 6.8242 -1.4212 2.6027 21 1 5.8357 -3.6350 2.6533 22 1 4.8891 -1.9166 1.2278 23 1 -0.3633 -1.0199 0.1252 24 1 -0.3634 0.6184 0.8207 25 1 -0.3633 0.4017 -0.9459 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.7134 1.6940 -2.0962 29 1 2.5429 4.0125 -2.0978 30 1 3.3225 5.0426 -0.0016 31 1 3.3145 5.0161 2.3892 32 1 2.8052 3.5680 3.2904 33 1 5.4795 3.9275 1.8635 34 1 5.2210 4.0193 3.6220 35 1 4.9702 2.4795 2.7646 36 1 0.3793 1.3051 2.5151 37 1 0.9726 -0.1644 2.0106 38 1 4.4631 0.5400 2.1844 39 1 3.2244 -0.6086 1.6234 40 1 5.0939 -3.0014 5.2135 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260158237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:22 Heat of formation + Delta-G solvation = 18.992965 kcal Electronic energy + Delta-G solvation = -18817.271629 eV Core-core repulsion = 16210.529790 eV Total energy + Delta-G solvation = -2606.741839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07959 -35.94666 -34.77187 -32.63309 -31.75220 -29.62224 -28.92276 -28.46041 -24.41678 -23.99533 -23.12372 -21.18488 -19.86705 -19.66062 -16.84777 -16.16906 -15.86327 -14.80829 -14.67008 -14.21785 -14.14595 -13.71990 -13.27358 -13.16786 -13.01872 -12.78750 -12.43925 -12.38837 -11.91343 -11.71511 -11.38339 -11.24540 -11.17696 -11.04640 -10.73126 -10.56753 -10.33823 -10.20101 -9.87385 -9.60500 -9.09508 -8.46022 -8.33809 -8.29860 -7.72585 -5.95456 -3.90672 1.61568 1.65340 3.32430 3.40555 3.42912 3.97555 4.49871 4.94400 4.97236 5.07349 5.26857 5.30013 5.31735 5.40786 5.48867 5.51891 5.60674 5.68689 5.69857 5.77870 5.82246 6.03778 6.11482 6.14900 6.18026 6.28365 6.34746 6.36048 6.49476 6.58021 6.64748 6.71272 6.84434 7.03348 7.13363 7.28263 7.39637 7.81037 7.99080 8.19708 8.66545 9.18207 9.66834 11.18094 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.008700 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.345516 B = 3217.674346 C = 3765.154953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.072 4.072 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.126 4.126 7 C -0.073 4.073 8 C -0.086 4.086 9 C -0.151 4.151 10 C -0.102 4.102 11 C 0.137 3.863 12 H 0.088 0.912 13 N -0.830 5.830 14 C -0.009 4.009 15 C -0.497 4.497 16 H 0.082 0.918 17 C 0.065 3.935 18 N -0.903 5.903 19 Si 0.868 3.132 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.268 1.268 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.321 0.679 37 H 0.344 0.656 38 H 0.016 0.984 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 10.596 -11.627 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.073 4.073 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.074 4.074 8 C -0.123 4.123 9 C -0.208 4.208 10 C -0.104 4.104 11 C 0.026 3.974 12 H 0.106 0.894 13 N -0.364 5.364 14 C -0.046 4.046 15 C -0.536 4.536 16 H 0.100 0.900 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.696 3.304 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.193 1.193 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.164 0.836 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.530 10.244 -10.768 15.537 hybrid contribution 0.628 -0.005 -1.940 2.039 sum -3.901 10.239 -12.708 16.779 Atomic orbital electron populations 1.21914 0.94932 1.02073 1.01879 1.21215 0.96053 0.93623 1.04886 1.19712 0.99001 0.95792 0.92768 1.20905 1.01444 0.94653 0.97415 1.20956 1.00576 0.95442 0.97662 1.20938 1.01471 0.99565 0.92476 1.19803 0.98471 0.93855 0.95266 1.20571 0.97428 0.99251 0.95041 1.21807 0.94684 1.03540 1.00808 1.21074 0.97498 0.94376 0.97443 1.20614 0.90709 0.95347 0.90751 0.89402 1.59133 1.02510 1.12185 1.62567 1.19839 0.93006 0.93155 0.98558 1.21061 1.20510 1.14834 0.97156 0.89978 1.24993 0.96986 0.96424 0.95117 1.69901 1.37881 1.23422 1.23111 0.86962 0.81812 0.77836 0.83762 1.20446 1.21474 1.19262 0.92018 0.92209 0.92970 0.91286 0.87416 0.86842 0.86811 0.86759 0.91858 0.90244 0.93284 0.92527 0.90942 0.86654 0.83630 0.96605 0.96027 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.83 37.16 0.33 -1.57 16 2 C -0.12 -1.85 4.94 -27.88 -0.14 -1.98 16 3 C -0.07 -1.16 5.01 -104.62 -0.52 -1.69 16 4 C -0.13 -1.80 9.73 -39.58 -0.39 -2.18 16 5 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 6 C -0.13 -1.76 9.68 -39.58 -0.38 -2.15 16 7 C -0.07 -1.15 5.13 -104.62 -0.54 -1.69 16 8 C -0.09 -1.23 5.40 -27.88 -0.15 -1.38 16 9 C -0.15 -2.26 9.90 37.16 0.37 -1.89 16 10 C -0.10 -1.75 4.81 -104.62 -0.50 -2.26 16 11 C 0.14 2.68 2.43 -68.86 -0.17 2.52 16 12 H 0.09 1.79 5.53 -51.93 -0.29 1.50 16 13 N -0.83 -15.41 8.26 -5.65 -0.05 -15.45 16 14 C -0.01 -0.20 3.30 -27.89 -0.09 -0.29 16 15 C -0.50 -13.93 9.39 -34.44 -0.32 -14.25 16 16 H 0.08 2.53 7.99 -52.49 -0.42 2.11 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 19 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.76 6.07 -51.93 -0.32 0.45 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.11 1.95 2.68 -51.93 -0.14 1.81 16 28 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.08 1.20 6.22 -51.93 -0.32 0.87 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.29 6.69 -51.93 -0.35 0.94 16 36 H 0.32 5.17 7.84 -39.29 -0.31 4.87 16 37 H 0.34 6.18 4.05 -39.29 -0.16 6.02 16 38 H 0.02 0.38 6.42 -51.93 -0.33 0.05 16 39 H 0.02 0.51 4.47 -51.93 -0.23 0.28 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -30.46 303.71 -8.20 -38.66 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.83 Total: 11.39 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -3.00 Total: -29.13 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.73 Total: -42.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.46 -8.20 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260158237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.654 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds