Wall clock time and date at job start Mon Mar 30 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47048 * 2 1 4 4 C 1.38236 * 120.00130 * 280.56343 * 3 2 1 5 5 C 1.38238 * 119.99937 * 180.25167 * 4 3 2 6 6 C 1.38235 * 119.99998 * 359.76899 * 5 4 3 7 7 C 1.38235 * 120.00007 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99983 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47545 * 264.98180 * 8 7 6 10 10 C 1.38233 * 120.00010 * 359.96142 * 7 6 5 11 11 C 1.50700 * 119.99843 * 180.02562 * 10 7 6 12 12 H 1.09001 * 109.47656 * 9.70902 * 11 10 7 13 13 N 1.46908 * 109.47015 * 129.70530 * 11 10 7 14 14 C 1.52996 * 109.47296 * 249.70412 * 11 10 7 15 15 C 1.50697 * 109.47434 * 174.93657 * 14 11 10 16 16 H 1.07999 * 120.00063 * 0.02562 * 15 14 11 17 17 C 1.37886 * 120.00161 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00191 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99839 * 0.02562 * 17 15 14 20 20 H 1.48489 * 109.47413 * 89.99540 * 19 17 15 21 21 H 1.48503 * 109.47164 * 210.00048 * 19 17 15 22 22 H 1.48504 * 109.46950 * 329.99505 * 19 17 15 23 23 H 1.08994 * 109.47262 * 186.99630 * 1 2 3 24 24 H 1.08998 * 109.47310 * 307.00021 * 1 2 3 25 25 H 1.08998 * 109.46789 * 66.99262 * 1 2 3 26 26 H 1.09000 * 109.47454 * 240.00251 * 2 1 3 27 27 H 1.09001 * 109.47332 * 119.99443 * 2 1 3 28 28 H 1.07998 * 119.99948 * 0.04640 * 4 3 2 29 29 H 1.07998 * 120.00086 * 179.79564 * 5 4 3 30 30 H 1.08001 * 120.00005 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47137 * 24.98490 * 8 7 6 32 32 H 1.09005 * 109.47153 * 144.98048 * 8 7 6 33 33 H 1.09002 * 109.46777 * 60.00245 * 9 8 7 34 34 H 1.09000 * 109.47160 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.47014 * 299.99982 * 9 8 7 36 36 H 1.00899 * 111.00038 * 310.05774 * 13 11 10 37 37 H 1.00898 * 110.99704 * 74.01334 * 13 11 10 38 38 H 1.08997 * 109.47192 * 54.93832 * 14 11 10 39 39 H 1.09003 * 109.47464 * 294.93919 * 14 11 10 40 40 H 0.96999 * 120.00525 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.0558 2.1457 -1.1769 5 6 2.5214 3.4473 -1.1778 6 6 2.9591 4.0256 -0.0010 7 6 2.9317 3.3022 1.1766 8 6 3.4094 3.9325 2.4595 9 6 4.8754 3.5630 2.6943 10 6 2.4658 2.0007 1.1776 11 6 2.4353 1.2123 2.4616 12 1 2.6499 1.8749 3.3001 13 7 1.1049 0.6147 2.6378 14 6 3.4886 0.1041 2.4047 15 6 3.5443 -0.6047 3.7334 16 1 2.8933 -0.2960 4.5378 17 6 4.4258 -1.6482 3.9217 18 7 4.4741 -2.2671 5.0811 19 14 5.5515 -2.1826 2.5301 20 1 6.8242 -1.4212 2.6027 21 1 5.8357 -3.6350 2.6533 22 1 4.8891 -1.9166 1.2278 23 1 -0.3633 -1.0199 0.1252 24 1 -0.3634 0.6184 0.8207 25 1 -0.3633 0.4017 -0.9459 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.7134 1.6940 -2.0962 29 1 2.5429 4.0125 -2.0978 30 1 3.3225 5.0426 -0.0016 31 1 3.3145 5.0161 2.3892 32 1 2.8052 3.5680 3.2904 33 1 5.4795 3.9275 1.8635 34 1 5.2210 4.0193 3.6220 35 1 4.9702 2.4795 2.7646 36 1 0.3793 1.3051 2.5151 37 1 0.9726 -0.1644 2.0106 38 1 4.4631 0.5400 2.1844 39 1 3.2244 -0.6086 1.6234 40 1 5.0939 -3.0014 5.2135 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260158237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:21 Heat of formation + Delta-G solvation = 0.871477 kcal Electronic energy + Delta-G solvation = -18818.057436 eV Core-core repulsion = 16210.529790 eV Total energy + Delta-G solvation = -2607.527646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29580 -37.31752 -35.97761 -34.62320 -33.11198 -30.91727 -30.60120 -29.72113 -26.03007 -25.16107 -24.44356 -22.69191 -21.18436 -20.91110 -18.90116 -17.62771 -17.07904 -16.35741 -15.93771 -15.88088 -15.34869 -15.02448 -14.76779 -14.49018 -14.39977 -14.17822 -13.98785 -13.60654 -13.31690 -12.99674 -12.86289 -12.79576 -12.44529 -12.28371 -12.21250 -11.93216 -11.77643 -11.63976 -11.50887 -11.46809 -11.03360 -10.68047 -9.58981 -9.43382 -9.12259 -8.21551 -6.21147 0.50660 0.51181 1.32753 1.33799 1.44611 2.37033 2.85358 3.11717 3.79529 3.84200 3.97910 4.04304 4.08960 4.19917 4.34550 4.36688 4.43238 4.53130 4.58890 4.65350 4.72354 4.78647 4.86791 4.97398 5.02788 5.06607 5.10656 5.14582 5.23338 5.29225 5.33407 5.45666 5.55710 5.64507 5.68018 5.74640 5.90353 6.20401 6.36843 6.54096 6.79709 6.89307 7.39703 8.95515 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.008700 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.345516 B = 3217.674346 C = 3765.154953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.128 4.128 7 C -0.085 4.085 8 C -0.084 4.084 9 C -0.148 4.148 10 C -0.125 4.125 11 C 0.149 3.851 12 H 0.070 0.930 13 N -0.843 5.843 14 C 0.000 4.000 15 C -0.496 4.496 16 H 0.038 0.962 17 C 0.004 3.996 18 N -0.952 5.952 19 Si 0.936 3.064 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.251 1.251 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.335 0.665 37 H 0.348 0.652 38 H 0.010 0.990 39 H 0.026 0.974 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 12.201 -14.958 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.084 4.084 4 C -0.147 4.147 5 C -0.139 4.139 6 C -0.145 4.145 7 C -0.086 4.086 8 C -0.121 4.121 9 C -0.205 4.205 10 C -0.127 4.127 11 C 0.038 3.962 12 H 0.088 0.912 13 N -0.379 5.379 14 C -0.037 4.037 15 C -0.535 4.535 16 H 0.057 0.943 17 C -0.191 4.191 18 N -0.594 5.594 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.175 1.175 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.148 0.852 37 H 0.168 0.832 38 H 0.029 0.971 39 H 0.044 0.956 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.529 11.867 -14.112 18.987 hybrid contribution 0.562 -0.435 -0.869 1.123 sum -3.967 11.432 -14.980 19.257 Atomic orbital electron populations 1.21865 0.93084 1.02599 1.02661 1.21148 0.97719 0.93246 1.03594 1.19855 0.99280 0.96198 0.93117 1.21189 1.01050 0.95073 0.97409 1.21384 0.98583 0.95169 0.98714 1.21255 1.00847 1.00617 0.91823 1.19986 0.98532 0.93558 0.96482 1.20567 0.96464 1.00830 0.94246 1.21762 0.95667 1.01076 1.02018 1.20790 1.00263 0.95200 0.96451 1.20200 0.89914 0.94003 0.92116 0.91225 1.59059 1.02693 1.12954 1.63197 1.19703 0.94192 0.94095 0.95745 1.21270 1.19147 1.14898 0.98158 0.94330 1.25865 0.98870 0.96644 0.97756 1.70061 1.39313 1.24437 1.25559 0.85869 0.79701 0.77415 0.80949 1.19684 1.21034 1.17471 0.91339 0.92782 0.91062 0.90276 0.90701 0.84517 0.83491 0.84100 0.89017 0.91931 0.91862 0.91481 0.94638 0.85165 0.83181 0.97131 0.95568 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.83 71.98 0.64 -2.76 16 2 C -0.12 -3.49 4.94 29.85 0.15 -3.34 16 3 C -0.08 -2.54 5.01 -19.86 -0.10 -2.64 16 4 C -0.13 -3.20 9.73 22.27 0.22 -2.99 16 5 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 6 C -0.13 -3.08 9.68 22.27 0.22 -2.86 16 7 C -0.08 -2.51 5.13 -19.87 -0.10 -2.62 16 8 C -0.08 -2.33 5.40 29.85 0.16 -2.17 16 9 C -0.15 -4.34 9.90 71.98 0.71 -3.63 16 10 C -0.12 -4.21 4.81 -19.87 -0.10 -4.31 16 11 C 0.15 6.00 2.43 44.17 0.11 6.11 16 12 H 0.07 3.01 5.53 -2.39 -0.01 2.99 16 13 N -0.84 -32.21 8.26 -171.79 -1.42 -33.62 16 14 C 0.00 -0.01 3.30 29.85 0.10 0.09 16 15 C -0.50 -29.05 9.39 25.60 0.24 -28.81 16 16 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 17 C 0.00 0.26 5.47 84.66 0.46 0.73 16 18 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 19 Si 0.94 45.52 27.47 68.60 1.88 47.41 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 1.32 6.07 -2.39 -0.01 1.30 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 2.69 2.68 -2.39 -0.01 2.69 16 28 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 32 H 0.06 1.93 6.22 -2.38 -0.01 1.91 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.03 1.29 6.69 -2.39 -0.02 1.27 16 36 H 0.33 10.97 7.84 -89.70 -0.70 10.27 16 37 H 0.35 12.75 4.05 -89.70 -0.36 12.39 16 38 H 0.01 0.51 6.42 -2.39 -0.02 0.50 16 39 H 0.03 1.25 4.47 -2.39 -0.01 1.24 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -68.03 303.71 3.62 -64.41 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.07 Total: 34.13 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 2.92 Total: -51.66 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -1.12 Total: -94.29 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -68.03 3.62 -64.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260158237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.282 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds