Wall clock time and date at job start Mon Mar 30 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47142 * 2 1 4 4 C 1.38265 * 119.99704 * 90.00079 * 3 2 1 5 5 C 1.38214 * 119.99929 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.99798 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.99585 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47848 * 300.02295 * 7 6 5 9 9 C 1.53002 * 109.47153 * 60.02610 * 7 6 5 10 10 C 1.38212 * 119.99873 * 0.02562 * 6 5 4 11 11 C 1.50700 * 119.99591 * 179.97438 * 10 6 5 12 12 H 1.08994 * 109.47551 * 39.99304 * 11 10 6 13 13 N 1.46900 * 109.47395 * 159.99766 * 11 10 6 14 14 C 1.50702 * 109.46869 * 279.99359 * 11 10 6 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 11 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 11 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.38212 * 120.00358 * 270.27607 * 3 2 1 23 23 H 1.09002 * 109.47660 * 299.99690 * 1 2 3 24 24 H 1.09006 * 109.47257 * 60.00142 * 1 2 3 25 25 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47377 * 240.00151 * 2 1 3 27 27 H 1.09004 * 109.47047 * 120.00358 * 2 1 3 28 28 H 1.07997 * 120.00045 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99938 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.47106 * 180.02562 * 7 6 5 31 31 H 1.09006 * 109.46523 * 59.99941 * 8 7 6 32 32 H 1.08993 * 109.47761 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.46771 * 300.00478 * 8 7 6 34 34 H 1.09000 * 109.47158 * 60.00318 * 9 7 6 35 35 H 1.09008 * 109.46935 * 179.97438 * 9 7 6 36 36 H 1.08992 * 109.47205 * 299.99894 * 9 7 6 37 37 H 1.00907 * 110.99792 * 296.04461 * 13 11 10 38 38 H 1.00903 * 111.00086 * 59.99217 * 13 11 10 39 39 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.99727 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7229 3.3758 1.1975 6 6 2.9534 4.0276 0.0001 7 6 3.4546 5.4487 0.0002 8 6 2.4462 6.3453 0.7214 9 6 4.8023 5.5141 0.7215 10 6 2.7230 3.3760 -1.1968 11 6 2.9736 4.0867 -2.5019 12 1 3.8839 4.6810 -2.4231 13 7 3.1263 3.0973 -3.5769 14 6 1.8088 4.9908 -2.8132 15 1 0.9711 5.0457 -2.1338 16 6 1.8154 5.7528 -3.9624 17 7 0.8014 6.5459 -4.2314 18 14 3.2647 5.6584 -5.1372 19 1 3.0188 4.5929 -6.1420 20 1 3.4272 6.9627 -5.8285 21 1 4.5001 5.3447 -4.3752 22 6 2.2572 2.0743 -1.1969 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0823 1.5635 2.1327 29 1 2.9025 3.8850 2.1328 30 1 3.5754 5.7915 -1.0275 31 1 2.3253 6.0026 1.7491 32 1 2.8085 7.3732 0.7211 33 1 1.4860 6.2987 0.2076 34 1 5.5208 4.8756 0.2076 35 1 5.1651 6.5421 0.7212 36 1 4.6815 5.1714 1.7491 37 1 3.9396 2.5199 -3.4240 38 1 2.2949 2.5332 -3.6700 39 1 0.8060 7.0816 -5.0400 40 1 2.0734 1.5666 -2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:40 Heat of formation + Delta-G solvation = -1.430440 kcal Electronic energy + Delta-G solvation = -18563.901208 eV Core-core repulsion = 15956.273743 eV Total energy + Delta-G solvation = -2607.627465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52358 -35.76364 -34.84648 -32.60520 -31.82620 -29.38691 -28.41924 -26.65782 -26.34521 -23.76410 -22.90893 -21.39788 -19.85717 -18.87748 -16.89462 -15.95073 -15.35315 -14.76292 -14.47723 -14.04195 -13.76267 -13.50617 -13.23985 -13.15345 -13.00720 -12.75162 -12.33511 -12.20822 -11.86161 -11.70682 -11.40055 -11.13231 -11.03474 -10.80391 -10.66400 -10.58076 -10.31437 -10.04402 -9.98187 -9.61394 -9.26904 -8.52950 -8.13039 -7.73535 -7.67136 -6.00009 -4.09627 1.91994 2.03461 3.56587 3.60877 3.73995 4.30792 4.65038 5.04706 5.12381 5.25427 5.31588 5.39109 5.51389 5.54211 5.63332 5.73538 5.75663 5.87550 5.94515 5.95562 5.99875 6.08326 6.12042 6.20734 6.25797 6.34328 6.35663 6.46913 6.55189 6.69241 6.85971 6.87977 6.88740 7.05399 7.16153 7.37308 7.59648 7.68641 8.16448 8.32578 8.69069 9.01189 9.63110 11.09233 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.008978 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.613895 B = 3117.916285 C = 3962.184192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.092 4.092 4 C -0.140 4.140 5 C -0.116 4.116 6 C -0.069 4.069 7 C -0.063 4.063 8 C -0.134 4.134 9 C -0.140 4.140 10 C -0.062 4.062 11 C 0.214 3.786 12 H 0.053 0.947 13 N -0.843 5.843 14 C -0.509 4.509 15 H 0.071 0.929 16 C 0.082 3.918 17 N -0.899 5.899 18 Si 0.933 3.067 19 H -0.281 1.281 20 H -0.319 1.319 21 H -0.274 1.274 22 C -0.126 4.126 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.311 0.689 38 H 0.334 0.666 39 H 0.263 0.737 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -8.483 9.908 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.092 4.092 4 C -0.158 4.158 5 C -0.134 4.134 6 C -0.070 4.070 7 C -0.081 4.081 8 C -0.191 4.191 9 C -0.198 4.198 10 C -0.064 4.064 11 C 0.105 3.895 12 H 0.071 0.929 13 N -0.373 5.373 14 C -0.547 4.547 15 H 0.089 0.911 16 C -0.122 4.122 17 N -0.536 5.536 18 Si 0.766 3.234 19 H -0.207 1.207 20 H -0.249 1.249 21 H -0.200 1.200 22 C -0.144 4.144 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.149 0.851 39 H 0.072 0.928 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.504 -7.731 9.295 12.901 hybrid contribution 0.379 -0.755 0.150 0.858 sum 4.882 -8.486 9.445 13.604 Atomic orbital electron populations 1.21742 0.95076 1.01024 1.02474 1.20458 0.95984 0.93297 1.01917 1.19711 1.00309 0.95770 0.93373 1.20733 1.03085 0.95262 0.96748 1.20859 1.00566 0.94611 0.97371 1.19639 0.99505 0.95559 0.92257 1.20185 0.93964 0.91700 1.02276 1.21732 1.00044 0.98334 0.99004 1.21856 0.97059 1.01056 0.99804 1.21076 0.94520 0.93292 0.97493 1.18751 0.98545 0.90147 0.82072 0.92936 1.59363 1.07053 1.21350 1.49501 1.20673 1.03837 1.22344 1.07826 0.91089 1.25010 0.96240 0.93502 0.97457 1.69955 1.31135 1.26404 1.26079 0.85916 0.82742 0.74309 0.80474 1.20728 1.24902 1.19995 1.20786 1.01553 0.95113 0.96957 0.92753 0.92285 0.92959 0.91592 0.91800 0.87373 0.87104 0.88111 0.93851 0.93095 0.91778 0.93134 0.92862 0.93291 0.87812 0.85094 0.92775 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 37.15 0.37 -1.42 16 2 C -0.08 -1.01 6.06 -27.89 -0.17 -1.18 16 3 C -0.09 -1.47 5.13 -104.62 -0.54 -2.00 16 4 C -0.14 -2.19 9.70 -39.58 -0.38 -2.58 16 5 C -0.12 -1.92 8.71 -39.58 -0.34 -2.26 16 6 C -0.07 -1.29 4.77 -104.63 -0.50 -1.79 16 7 C -0.06 -1.13 2.77 -91.77 -0.25 -1.39 16 8 C -0.13 -2.28 9.01 37.16 0.33 -1.94 16 9 C -0.14 -2.07 9.01 37.16 0.33 -1.74 16 10 C -0.06 -1.25 5.01 -104.63 -0.52 -1.77 16 11 C 0.21 4.84 1.65 -70.02 -0.12 4.73 16 12 H 0.05 1.25 5.74 -51.93 -0.30 0.95 16 13 N -0.84 -17.52 6.26 -6.65 -0.04 -17.56 16 14 C -0.51 -13.80 8.66 -34.44 -0.30 -14.10 16 15 H 0.07 2.15 7.98 -52.49 -0.42 1.73 16 16 C 0.08 2.33 5.47 -17.82 -0.10 2.24 16 17 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 18 Si 0.93 23.66 26.04 -169.99 -4.43 19.23 16 19 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.32 -8.21 7.11 56.52 0.40 -7.81 16 21 H -0.27 -6.75 6.54 56.52 0.37 -6.38 16 22 C -0.13 -2.28 8.91 -39.59 -0.35 -2.64 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 27 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.11 1.61 7.10 -52.49 -0.37 1.23 16 30 H 0.10 2.10 5.31 -51.93 -0.28 1.83 16 31 H 0.04 0.64 7.39 -51.93 -0.38 0.26 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.05 0.65 7.39 -51.93 -0.38 0.27 16 37 H 0.31 5.60 9.06 -39.29 -0.36 5.24 16 38 H 0.33 6.71 7.28 -39.29 -0.29 6.43 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.11 1.95 6.25 -52.49 -0.33 1.62 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -29.91 314.81 -7.98 -37.90 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.49 Total: 10.05 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -2.54 Total: -27.85 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.73 Total: -44.07 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.43 Total: 19.23 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.91 -7.98 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.465 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds