Wall clock time and date at job start Mon Mar 30 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47142 * 2 1 4 4 C 1.38265 * 119.99704 * 90.00079 * 3 2 1 5 5 C 1.38214 * 119.99929 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.99798 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.99585 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47848 * 300.02295 * 7 6 5 9 9 C 1.53002 * 109.47153 * 60.02610 * 7 6 5 10 10 C 1.38212 * 119.99873 * 0.02562 * 6 5 4 11 11 C 1.50700 * 119.99591 * 179.97438 * 10 6 5 12 12 H 1.08994 * 109.47551 * 39.99304 * 11 10 6 13 13 N 1.46900 * 109.47395 * 159.99766 * 11 10 6 14 14 C 1.50702 * 109.46869 * 279.99359 * 11 10 6 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 11 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 11 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.38212 * 120.00358 * 270.27607 * 3 2 1 23 23 H 1.09002 * 109.47660 * 299.99690 * 1 2 3 24 24 H 1.09006 * 109.47257 * 60.00142 * 1 2 3 25 25 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47377 * 240.00151 * 2 1 3 27 27 H 1.09004 * 109.47047 * 120.00358 * 2 1 3 28 28 H 1.07997 * 120.00045 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99938 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.47106 * 180.02562 * 7 6 5 31 31 H 1.09006 * 109.46523 * 59.99941 * 8 7 6 32 32 H 1.08993 * 109.47761 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.46771 * 300.00478 * 8 7 6 34 34 H 1.09000 * 109.47158 * 60.00318 * 9 7 6 35 35 H 1.09008 * 109.46935 * 179.97438 * 9 7 6 36 36 H 1.08992 * 109.47205 * 299.99894 * 9 7 6 37 37 H 1.00907 * 110.99792 * 296.04461 * 13 11 10 38 38 H 1.00903 * 111.00086 * 59.99217 * 13 11 10 39 39 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.99727 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7229 3.3758 1.1975 6 6 2.9534 4.0276 0.0001 7 6 3.4546 5.4487 0.0002 8 6 2.4462 6.3453 0.7214 9 6 4.8023 5.5141 0.7215 10 6 2.7230 3.3760 -1.1968 11 6 2.9736 4.0867 -2.5019 12 1 3.8839 4.6810 -2.4231 13 7 3.1263 3.0973 -3.5769 14 6 1.8088 4.9908 -2.8132 15 1 0.9711 5.0457 -2.1338 16 6 1.8154 5.7528 -3.9624 17 7 0.8014 6.5459 -4.2314 18 14 3.2647 5.6584 -5.1372 19 1 3.0188 4.5929 -6.1420 20 1 3.4272 6.9627 -5.8285 21 1 4.5001 5.3447 -4.3752 22 6 2.2572 2.0743 -1.1969 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0823 1.5635 2.1327 29 1 2.9025 3.8850 2.1328 30 1 3.5754 5.7915 -1.0275 31 1 2.3253 6.0026 1.7491 32 1 2.8085 7.3732 0.7211 33 1 1.4860 6.2987 0.2076 34 1 5.5208 4.8756 0.2076 35 1 5.1651 6.5421 0.7212 36 1 4.6815 5.1714 1.7491 37 1 3.9396 2.5199 -3.4240 38 1 2.2949 2.5332 -3.6700 39 1 0.8060 7.0816 -5.0400 40 1 2.0734 1.5666 -2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:40 Heat of formation + Delta-G solvation = -19.250059 kcal Electronic energy + Delta-G solvation = -18564.673925 eV Core-core repulsion = 15956.273743 eV Total energy + Delta-G solvation = -2608.400181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90211 -37.10770 -36.48250 -34.14065 -33.57854 -30.84350 -29.70886 -28.28353 -27.91473 -24.97047 -24.56161 -22.66379 -21.38007 -20.27823 -18.99589 -17.33618 -16.87985 -16.48472 -15.95495 -15.70133 -15.05304 -14.88563 -14.66020 -14.52098 -14.33387 -14.20208 -13.91293 -13.57834 -13.33226 -13.03241 -12.84491 -12.72188 -12.47992 -12.19931 -12.07835 -11.93668 -11.80589 -11.72425 -11.46329 -11.31020 -11.09797 -10.73959 -9.52839 -9.36356 -9.12068 -8.22770 -6.33786 0.59568 0.66082 1.48654 1.54990 1.68866 2.51849 2.95623 3.11549 3.87598 3.95461 4.04797 4.14898 4.16435 4.26765 4.41816 4.42197 4.54826 4.58471 4.70449 4.73048 4.78260 4.83541 4.98256 4.99954 5.03725 5.08095 5.09101 5.21767 5.31309 5.34577 5.40384 5.43950 5.50787 5.56571 5.73883 5.83323 6.00855 6.14699 6.30180 6.50993 6.77726 6.97109 7.41379 8.90421 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.008978 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.613895 B = 3117.916285 C = 3962.184192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.066 4.066 8 C -0.128 4.128 9 C -0.132 4.132 10 C -0.096 4.096 11 C 0.226 3.774 12 H 0.042 0.958 13 N -0.846 5.846 14 C -0.494 4.494 15 H 0.025 0.975 16 C 0.028 3.972 17 N -0.947 5.947 18 Si 0.995 3.005 19 H -0.279 1.279 20 H -0.324 1.324 21 H -0.262 1.262 22 C -0.137 4.137 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.332 0.668 38 H 0.339 0.661 39 H 0.263 0.737 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -10.597 11.850 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.093 4.093 4 C -0.152 4.152 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.084 4.084 8 C -0.185 4.185 9 C -0.189 4.189 10 C -0.098 4.098 11 C 0.116 3.884 12 H 0.059 0.941 13 N -0.377 5.377 14 C -0.532 4.532 15 H 0.043 0.957 16 C -0.171 4.171 17 N -0.588 5.588 18 Si 0.825 3.175 19 H -0.205 1.205 20 H -0.255 1.255 21 H -0.187 1.187 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.071 0.929 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.962 -9.869 11.250 16.109 hybrid contribution -0.138 -0.159 -0.336 0.396 sum 5.824 -10.028 10.914 15.925 Atomic orbital electron populations 1.21729 0.94769 1.02299 1.01360 1.20520 0.96079 0.91287 1.03484 1.20097 0.99189 0.97357 0.92665 1.21172 1.01201 0.94910 0.97964 1.21132 0.99925 0.95151 0.97325 1.19821 1.00058 0.95883 0.92809 1.20144 0.96060 0.91616 1.00606 1.21678 0.97867 0.99170 0.99818 1.21779 0.94766 1.01961 1.00363 1.20918 0.97557 0.94541 0.96779 1.18339 0.95838 0.90044 0.84185 0.94075 1.59076 1.08214 1.21676 1.48759 1.20794 1.03677 1.22631 1.06136 0.95673 1.25787 0.98498 0.93492 0.99314 1.70085 1.33384 1.28270 1.27017 0.84928 0.80249 0.73883 0.78421 1.20470 1.25474 1.18701 1.20914 1.01734 0.94577 0.98276 0.92857 0.94421 0.90533 0.90924 0.89374 0.84030 0.84608 0.92095 0.91191 0.91976 0.95671 0.93375 0.91684 0.91164 0.85542 0.84637 0.92853 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.89 71.98 0.71 -2.45 16 2 C -0.08 -1.70 6.06 29.85 0.18 -1.52 16 3 C -0.09 -2.75 5.13 -19.86 -0.10 -2.86 16 4 C -0.13 -3.75 9.70 22.27 0.22 -3.54 16 5 C -0.12 -3.58 8.71 22.27 0.19 -3.39 16 6 C -0.09 -3.14 4.77 -19.87 -0.09 -3.24 16 7 C -0.07 -2.36 2.77 -11.54 -0.03 -2.39 16 8 C -0.13 -4.36 9.01 71.98 0.65 -3.71 16 9 C -0.13 -3.63 9.01 71.98 0.65 -2.98 16 10 C -0.10 -3.90 5.01 -19.87 -0.10 -4.00 16 11 C 0.23 10.41 1.65 43.42 0.07 10.48 16 12 H 0.04 2.00 5.74 -2.39 -0.01 1.99 16 13 N -0.85 -34.82 6.26 -174.96 -1.10 -35.92 16 14 C -0.49 -28.05 8.66 25.60 0.22 -27.82 16 15 H 0.02 1.62 7.98 -2.91 -0.02 1.60 16 16 C 0.03 1.64 5.47 84.66 0.46 2.10 16 17 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 18 Si 0.99 49.87 26.04 68.60 1.79 51.65 16 19 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.32 -16.41 7.11 99.48 0.71 -15.71 16 21 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 22 C -0.14 -4.86 8.91 22.27 0.20 -4.66 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 27 H 0.09 1.57 8.09 -2.38 -0.02 1.55 16 28 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.14 3.40 7.10 -2.91 -0.02 3.38 16 30 H 0.06 2.65 5.31 -2.38 -0.01 2.64 16 31 H 0.07 1.96 7.39 -2.38 -0.02 1.95 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.07 1.63 7.39 -2.39 -0.02 1.61 16 37 H 0.33 11.53 9.06 -89.69 -0.81 10.72 16 38 H 0.34 13.56 7.28 -89.69 -0.65 12.90 16 39 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.12 3.91 6.25 -2.91 -0.02 3.90 16 Total: -1.00 -67.43 314.81 3.72 -63.71 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.49 Total: 30.34 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 3.23 Total: -49.98 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -0.80 Total: -95.72 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 1.79 Total: 51.65 kcal Total: -67.43 3.72 -63.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.456 kcal (2) G-P(sol) polarization free energy of solvation -67.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds