Wall clock time and date at job start Mon Mar 30 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50710 * 109.46590 * 2 1 4 4 C 1.38253 * 119.99851 * 269.97645 * 3 2 1 5 5 C 1.38217 * 119.99700 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99968 * 359.74590 * 5 4 3 7 7 C 1.50695 * 119.99966 * 180.27601 * 6 5 4 8 8 C 1.53003 * 109.47099 * 300.25549 * 7 6 5 9 9 C 1.53005 * 109.47383 * 60.25245 * 7 6 5 10 10 C 1.38217 * 119.99796 * 0.53400 * 6 5 4 11 11 C 1.50703 * 119.99676 * 179.74358 * 10 6 5 12 12 H 1.08994 * 109.47275 * 324.72501 * 11 10 6 13 13 N 1.46898 * 109.46797 * 204.72016 * 11 10 6 14 14 C 1.50700 * 109.47148 * 84.72277 * 11 10 6 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46793 * 300.00001 * 18 16 14 21 21 H 1.48500 * 109.47000 * 60.00094 * 18 16 14 22 22 C 1.38215 * 119.99751 * 90.00313 * 3 2 1 23 23 H 1.09000 * 109.46430 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47022 * 299.99891 * 1 2 3 25 25 H 1.08997 * 109.47100 * 60.00349 * 1 2 3 26 26 H 1.09002 * 109.47196 * 240.00626 * 2 1 3 27 27 H 1.08997 * 109.47100 * 119.99651 * 2 1 3 28 28 H 1.07999 * 120.00379 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.99717 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.47288 * 180.25434 * 7 6 5 31 31 H 1.09001 * 109.47444 * 60.00243 * 8 7 6 32 32 H 1.09004 * 109.46994 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.46944 * 299.99542 * 8 7 6 34 34 H 1.09006 * 109.46447 * 59.99941 * 9 7 6 35 35 H 1.08998 * 109.46832 * 179.97438 * 9 7 6 36 36 H 1.08999 * 109.47063 * 300.00327 * 9 7 6 37 37 H 1.00892 * 111.00332 * 300.00256 * 13 11 10 38 38 H 1.00905 * 110.99665 * 63.96030 * 13 11 10 39 39 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 40 40 H 1.08002 * 119.99824 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4210 0.0000 4 6 2.2631 2.0725 -1.1973 5 6 2.7242 3.3755 -1.1973 6 6 2.9496 4.0290 0.0001 7 6 3.4464 5.4517 0.0001 8 6 4.7924 5.5219 -0.7240 9 6 2.4337 6.3456 -0.7184 10 6 2.7243 3.3756 1.1970 11 6 2.9756 4.0860 2.5021 12 1 3.8350 4.7479 2.3960 13 7 3.2462 3.0968 3.5538 14 6 1.7607 4.8961 2.8750 15 1 0.8934 4.8961 2.2315 16 6 1.7562 5.6363 4.0382 17 7 2.8123 5.6359 4.8220 18 14 0.2502 6.6399 4.5008 19 1 0.4973 7.3391 5.7874 20 1 -0.0237 7.6402 3.4379 21 1 -0.9206 5.7378 4.6452 22 6 2.2626 2.0725 1.1970 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0839 1.5632 -2.1326 29 1 2.9049 3.8844 -2.1326 30 1 3.5684 5.7940 1.0277 31 1 4.6705 5.1797 -1.7517 32 1 5.1520 6.5509 -0.7236 33 1 5.5140 4.8851 -0.2121 34 1 1.4747 6.2956 -0.2026 35 1 2.7929 7.3747 -0.7180 36 1 2.3117 6.0033 -1.7461 37 1 2.4636 2.4709 3.6716 38 1 4.0931 2.5842 3.3588 39 1 3.5942 5.1144 4.5820 40 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:43 Heat of formation + Delta-G solvation = -5.723728 kcal Electronic energy + Delta-G solvation = -18550.287404 eV Core-core repulsion = 15942.473768 eV Total energy + Delta-G solvation = -2607.813636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48660 -35.76598 -34.86931 -32.63290 -31.46828 -29.18382 -28.38345 -26.69499 -25.63579 -23.78613 -22.86929 -21.39844 -20.06291 -18.99702 -16.74761 -16.03318 -15.26995 -14.56812 -14.43440 -13.86931 -13.68680 -13.51132 -13.19968 -13.17645 -13.05848 -12.75816 -12.30083 -11.97695 -11.88092 -11.85235 -11.24341 -11.05722 -10.96628 -10.76443 -10.65387 -10.60399 -10.47356 -10.04817 -10.00292 -9.61345 -8.86907 -8.32017 -8.07887 -7.67858 -7.45536 -6.14473 -3.97551 1.93232 2.06106 3.48761 3.50114 3.68625 4.31749 4.63647 5.05202 5.13157 5.30642 5.36929 5.47597 5.52088 5.55274 5.62200 5.71389 5.76488 5.92525 5.94732 5.98898 6.00563 6.08875 6.14975 6.19719 6.24458 6.32997 6.35072 6.44687 6.57258 6.72827 6.77978 6.87825 6.97062 7.09088 7.22963 7.48874 7.65622 8.02553 8.34029 8.69210 8.78641 9.08551 9.85148 11.24612 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.008739 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.343058 B = 3203.084790 C = 4000.453372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.092 4.092 4 C -0.143 4.143 5 C -0.117 4.117 6 C -0.074 4.074 7 C -0.063 4.063 8 C -0.139 4.139 9 C -0.134 4.134 10 C -0.062 4.062 11 C 0.237 3.763 12 H 0.042 0.958 13 N -0.831 5.831 14 C -0.600 4.600 15 H 0.044 0.956 16 C 0.039 3.961 17 N -0.892 5.892 18 Si 1.060 2.940 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.291 1.291 22 C -0.126 4.126 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.325 0.675 38 H 0.301 0.699 39 H 0.289 0.711 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -6.104 -11.218 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.135 4.135 6 C -0.075 4.075 7 C -0.081 4.081 8 C -0.197 4.197 9 C -0.191 4.191 10 C -0.064 4.064 11 C 0.128 3.872 12 H 0.060 0.940 13 N -0.359 5.359 14 C -0.639 4.639 15 H 0.063 0.937 16 C -0.171 4.171 17 N -0.526 5.526 18 Si 0.889 3.111 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.217 1.217 22 C -0.144 4.144 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.664 -4.449 -9.542 10.549 hybrid contribution 0.332 -1.855 -2.061 2.792 sum -0.332 -6.304 -11.603 13.209 Atomic orbital electron populations 1.21738 0.95126 1.01015 1.02374 1.20463 0.95953 0.93341 1.01918 1.19722 1.00300 0.95745 0.93396 1.20708 1.03423 0.95305 0.96701 1.20850 1.00669 0.94646 0.97312 1.19653 0.99927 0.95584 0.92331 1.20174 0.93967 0.91765 1.02172 1.21843 0.97069 1.01035 0.99732 1.21739 0.99809 0.98439 0.99143 1.21343 0.93772 0.93296 0.98005 1.18393 0.97768 0.89569 0.81459 0.94009 1.59455 1.05648 1.20700 1.50133 1.21589 1.00537 1.31380 1.10348 0.93746 1.25561 1.02141 0.96498 0.92901 1.70555 1.05225 1.38977 1.37816 0.83696 0.75037 0.76158 0.76165 1.20940 1.21664 1.21735 1.20789 1.01563 0.95224 0.96832 0.92936 0.92353 0.92797 0.91801 0.91587 0.87434 0.87224 0.88169 0.93327 0.92891 0.93106 0.92111 0.93073 0.93740 0.86108 0.88845 0.89800 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.89 37.16 0.37 -1.46 16 2 C -0.08 -1.06 6.07 -27.87 -0.17 -1.23 16 3 C -0.09 -1.53 5.13 -104.62 -0.54 -2.07 16 4 C -0.14 -2.32 9.70 -39.58 -0.38 -2.70 16 5 C -0.12 -1.99 8.71 -39.58 -0.34 -2.33 16 6 C -0.07 -1.44 4.78 -104.63 -0.50 -1.94 16 7 C -0.06 -1.15 2.88 -91.77 -0.26 -1.41 16 8 C -0.14 -2.13 9.00 37.16 0.33 -1.80 16 9 C -0.13 -2.24 9.01 37.16 0.33 -1.91 16 10 C -0.06 -1.31 4.98 -104.62 -0.52 -1.83 16 11 C 0.24 5.70 1.77 -70.02 -0.12 5.58 16 12 H 0.04 1.09 6.27 -51.93 -0.33 0.77 16 13 N -0.83 -18.94 7.39 -6.65 -0.05 -18.99 16 14 C -0.60 -16.30 8.48 -34.44 -0.29 -16.59 16 15 H 0.04 1.25 7.74 -52.49 -0.41 0.84 16 16 C 0.04 1.09 5.39 -17.82 -0.10 0.99 16 17 N -0.89 -26.55 13.51 55.43 0.75 -25.80 16 18 Si 1.06 25.25 29.90 -169.99 -5.08 20.17 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.13 -2.41 8.92 -39.59 -0.35 -2.77 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 27 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.11 1.63 7.10 -52.48 -0.37 1.26 16 30 H 0.10 2.17 5.41 -51.93 -0.28 1.89 16 31 H 0.05 0.67 7.37 -51.93 -0.38 0.28 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.65 7.41 -51.93 -0.38 0.27 16 37 H 0.33 7.22 7.20 -39.30 -0.28 6.94 16 38 H 0.30 6.12 9.06 -39.29 -0.36 5.76 16 39 H 0.29 8.62 6.39 -40.82 -0.26 8.36 16 40 H 0.11 2.10 6.29 -52.49 -0.33 1.77 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -29.27 318.32 -8.54 -37.81 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -6.40 Total: 13.47 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -2.55 Total: -31.46 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.70 Total: -44.79 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.27 -8.54 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.085 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds