Wall clock time and date at job start Mon Mar 30 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50710 * 109.46590 * 2 1 4 4 C 1.38253 * 119.99851 * 269.97645 * 3 2 1 5 5 C 1.38217 * 119.99700 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99968 * 359.74590 * 5 4 3 7 7 C 1.50695 * 119.99966 * 180.27601 * 6 5 4 8 8 C 1.53003 * 109.47099 * 300.25549 * 7 6 5 9 9 C 1.53005 * 109.47383 * 60.25245 * 7 6 5 10 10 C 1.38217 * 119.99796 * 0.53400 * 6 5 4 11 11 C 1.50703 * 119.99676 * 179.74358 * 10 6 5 12 12 H 1.08994 * 109.47275 * 324.72501 * 11 10 6 13 13 N 1.46898 * 109.46797 * 204.72016 * 11 10 6 14 14 C 1.50700 * 109.47148 * 84.72277 * 11 10 6 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46793 * 300.00001 * 18 16 14 21 21 H 1.48500 * 109.47000 * 60.00094 * 18 16 14 22 22 C 1.38215 * 119.99751 * 90.00313 * 3 2 1 23 23 H 1.09000 * 109.46430 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47022 * 299.99891 * 1 2 3 25 25 H 1.08997 * 109.47100 * 60.00349 * 1 2 3 26 26 H 1.09002 * 109.47196 * 240.00626 * 2 1 3 27 27 H 1.08997 * 109.47100 * 119.99651 * 2 1 3 28 28 H 1.07999 * 120.00379 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.99717 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.47288 * 180.25434 * 7 6 5 31 31 H 1.09001 * 109.47444 * 60.00243 * 8 7 6 32 32 H 1.09004 * 109.46994 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.46944 * 299.99542 * 8 7 6 34 34 H 1.09006 * 109.46447 * 59.99941 * 9 7 6 35 35 H 1.08998 * 109.46832 * 179.97438 * 9 7 6 36 36 H 1.08999 * 109.47063 * 300.00327 * 9 7 6 37 37 H 1.00892 * 111.00332 * 300.00256 * 13 11 10 38 38 H 1.00905 * 110.99665 * 63.96030 * 13 11 10 39 39 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 40 40 H 1.08002 * 119.99824 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4210 0.0000 4 6 2.2631 2.0725 -1.1973 5 6 2.7242 3.3755 -1.1973 6 6 2.9496 4.0290 0.0001 7 6 3.4464 5.4517 0.0001 8 6 4.7924 5.5219 -0.7240 9 6 2.4337 6.3456 -0.7184 10 6 2.7243 3.3756 1.1970 11 6 2.9756 4.0860 2.5021 12 1 3.8350 4.7479 2.3960 13 7 3.2462 3.0968 3.5538 14 6 1.7607 4.8961 2.8750 15 1 0.8934 4.8961 2.2315 16 6 1.7562 5.6363 4.0382 17 7 2.8123 5.6359 4.8220 18 14 0.2502 6.6399 4.5008 19 1 0.4973 7.3391 5.7874 20 1 -0.0237 7.6402 3.4379 21 1 -0.9206 5.7378 4.6452 22 6 2.2626 2.0725 1.1970 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0839 1.5632 -2.1326 29 1 2.9049 3.8844 -2.1326 30 1 3.5684 5.7940 1.0277 31 1 4.6705 5.1797 -1.7517 32 1 5.1520 6.5509 -0.7236 33 1 5.5140 4.8851 -0.2121 34 1 1.4747 6.2956 -0.2026 35 1 2.7929 7.3747 -0.7180 36 1 2.3117 6.0033 -1.7461 37 1 2.4636 2.4709 3.6716 38 1 4.0931 2.5842 3.3588 39 1 3.5942 5.1144 4.5820 40 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:43 Heat of formation + Delta-G solvation = -22.001124 kcal Electronic energy + Delta-G solvation = -18550.993245 eV Core-core repulsion = 15942.473768 eV Total energy + Delta-G solvation = -2608.519476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92314 -37.17723 -36.58543 -33.98917 -33.32137 -30.77293 -29.68593 -27.99066 -27.57707 -25.06205 -24.60432 -22.73088 -21.63948 -20.42999 -18.79137 -17.47297 -16.71136 -16.29772 -15.92993 -15.55432 -15.11778 -14.96515 -14.66856 -14.55086 -14.42697 -13.95929 -13.79139 -13.75056 -13.28994 -13.08074 -12.72371 -12.56555 -12.45954 -12.25571 -12.15049 -11.96842 -11.92178 -11.77607 -11.35791 -11.17467 -10.82621 -10.47159 -9.57069 -9.31921 -9.13716 -8.35014 -6.20536 0.55019 0.62921 1.52683 1.59724 1.78806 2.61422 2.93749 3.32833 3.83245 3.92289 4.00912 4.11861 4.16060 4.26550 4.37071 4.38282 4.50874 4.55372 4.66298 4.69971 4.74415 4.78847 4.94572 4.95546 5.00535 5.05225 5.08977 5.16494 5.30338 5.31678 5.37016 5.42777 5.46566 5.66981 5.79796 5.91070 6.00931 6.24839 6.29545 6.70737 6.78409 7.03858 7.68751 9.00012 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.008739 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.343058 B = 3203.084790 C = 4000.453372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.092 4.092 4 C -0.136 4.136 5 C -0.115 4.115 6 C -0.090 4.090 7 C -0.064 4.064 8 C -0.131 4.131 9 C -0.128 4.128 10 C -0.096 4.096 11 C 0.245 3.755 12 H 0.012 0.988 13 N -0.838 5.838 14 C -0.598 4.598 15 H 0.028 0.972 16 C -0.009 4.009 17 N -0.920 5.920 18 Si 1.102 2.898 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.279 1.279 22 C -0.139 4.139 23 H 0.077 0.923 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.328 0.672 38 H 0.315 0.685 39 H 0.277 0.723 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -7.233 -13.963 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.092 4.092 4 C -0.154 4.154 5 C -0.133 4.133 6 C -0.090 4.090 7 C -0.083 4.083 8 C -0.188 4.188 9 C -0.185 4.185 10 C -0.098 4.098 11 C 0.136 3.864 12 H 0.030 0.970 13 N -0.367 5.367 14 C -0.637 4.637 15 H 0.046 0.954 16 C -0.213 4.213 17 N -0.556 5.556 18 Si 0.926 3.074 19 H -0.211 1.211 20 H -0.201 1.201 21 H -0.205 1.205 22 C -0.158 4.158 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.415 -5.591 -12.303 13.588 hybrid contribution 0.586 -1.578 -1.290 2.121 sum -0.828 -7.169 -13.594 15.391 Atomic orbital electron populations 1.21718 0.94465 1.02385 1.01425 1.20533 0.96377 0.91221 1.03335 1.20100 0.99121 0.97351 0.92586 1.21168 1.01385 0.94946 0.97875 1.21142 0.99778 0.95137 0.97254 1.19839 1.00386 0.96041 0.92746 1.20117 0.96188 0.91759 1.00224 1.21770 0.94868 1.01816 1.00360 1.21694 0.97832 0.99075 0.99942 1.21110 0.96946 0.94505 0.97219 1.18010 0.95313 0.89471 0.83590 0.97039 1.59248 1.06374 1.20814 1.50266 1.21785 1.00874 1.31415 1.09597 0.95403 1.26821 1.03818 0.97448 0.93208 1.70668 1.05727 1.40342 1.38843 0.83134 0.72581 0.75500 0.76153 1.21061 1.20088 1.20452 1.20849 1.02221 0.94712 0.97986 0.90459 0.94483 0.92551 0.89230 0.91365 0.83776 0.84374 0.92825 0.90902 0.91655 0.94113 0.94939 0.91781 0.91037 0.85864 0.87383 0.91108 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.89 71.98 0.71 -2.47 16 2 C -0.08 -1.83 6.07 29.85 0.18 -1.65 16 3 C -0.09 -2.86 5.13 -19.86 -0.10 -2.96 16 4 C -0.14 -3.90 9.70 22.27 0.22 -3.69 16 5 C -0.12 -3.60 8.71 22.27 0.19 -3.41 16 6 C -0.09 -3.43 4.78 -19.87 -0.09 -3.53 16 7 C -0.06 -2.38 2.88 -11.54 -0.03 -2.41 16 8 C -0.13 -3.84 9.00 71.98 0.65 -3.19 16 9 C -0.13 -4.19 9.01 71.98 0.65 -3.54 16 10 C -0.10 -4.15 4.98 -19.87 -0.10 -4.25 16 11 C 0.25 12.42 1.77 43.42 0.08 12.50 16 12 H 0.01 0.67 6.27 -2.39 -0.01 0.65 16 13 N -0.84 -39.96 7.39 -174.96 -1.29 -41.25 16 14 C -0.60 -33.86 8.48 25.60 0.22 -33.64 16 15 H 0.03 1.63 7.74 -2.91 -0.02 1.60 16 16 C -0.01 -0.54 5.39 84.65 0.46 -0.09 16 17 N -0.92 -56.84 13.51 21.45 0.29 -56.55 16 18 Si 1.10 51.89 29.90 68.60 2.05 53.94 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C -0.14 -5.35 8.92 22.27 0.20 -5.16 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 27 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 28 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 29 H 0.14 3.48 7.10 -2.91 -0.02 3.46 16 30 H 0.05 2.47 5.41 -2.39 -0.01 2.45 16 31 H 0.07 1.77 7.37 -2.39 -0.02 1.75 16 32 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.92 7.41 -2.39 -0.02 1.90 16 37 H 0.33 15.16 7.20 -89.70 -0.65 14.51 16 38 H 0.31 13.38 9.06 -89.69 -0.81 12.57 16 39 H 0.28 17.35 6.39 -92.70 -0.59 16.76 16 40 H 0.11 4.07 6.29 -2.91 -0.02 4.05 16 Total: -1.00 -65.78 318.32 4.01 -61.76 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -0.25 Total: 39.57 kcal Atomic # 6 Polarization: -60.69 SS G_CDS: 3.22 Total: -57.47 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -1.00 Total: -97.80 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal Total: -65.78 4.01 -61.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.763 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds