Wall clock time and date at job start Mon Mar 30 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47455 * 2 1 4 4 C 1.53001 * 109.47348 * 120.00566 * 2 1 3 5 5 C 1.50704 * 109.47255 * 240.00244 * 2 1 3 6 6 C 1.38265 * 119.99570 * 5.67403 * 5 2 1 7 7 C 1.38214 * 119.99765 * 179.97438 * 6 5 2 8 8 C 1.38255 * 120.00261 * 359.97438 * 7 6 5 9 9 C 1.38220 * 119.99682 * 359.97438 * 8 7 6 10 10 C 1.38208 * 120.00354 * 185.40073 * 5 2 1 11 11 C 1.50698 * 120.00113 * 359.97438 * 10 5 2 12 12 H 1.09004 * 109.47091 * 347.06861 * 11 10 5 13 13 N 1.46900 * 109.47211 * 227.07520 * 11 10 5 14 14 C 1.52992 * 109.47319 * 107.07041 * 11 10 5 15 15 C 1.50700 * 109.47282 * 186.17728 * 14 11 10 16 16 H 1.08005 * 120.00190 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00147 * 180.02562 * 15 14 11 18 18 N 1.31511 * 120.00168 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99908 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47033 * 60.00105 * 19 17 15 21 21 H 1.48504 * 109.46937 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47334 * 299.99857 * 19 17 15 23 23 H 1.09001 * 109.47437 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47181 * 59.99447 * 1 2 3 25 25 H 1.09005 * 109.46905 * 299.99832 * 1 2 3 26 26 H 1.09003 * 109.46589 * 70.20150 * 3 2 1 27 27 H 1.08992 * 109.46806 * 190.20320 * 3 2 1 28 28 H 1.08996 * 109.47151 * 310.20469 * 3 2 1 29 29 H 1.09000 * 109.47005 * 83.81932 * 4 2 1 30 30 H 1.08995 * 109.47016 * 203.83082 * 4 2 1 31 31 H 1.08998 * 109.46516 * 323.82442 * 4 2 1 32 32 H 1.08000 * 119.99818 * 359.97438 * 6 5 2 33 33 H 1.07999 * 119.99884 * 180.02562 * 7 6 5 34 34 H 1.07993 * 120.00588 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.99656 * 180.02562 * 9 8 7 36 36 H 1.00901 * 110.99907 * 176.04649 * 13 11 10 37 37 H 1.00907 * 110.99447 * 299.99544 * 13 11 10 38 38 H 1.09003 * 109.47265 * 306.17463 * 14 11 10 39 39 H 1.08997 * 109.47289 * 66.17703 * 14 11 10 40 40 H 0.96999 * 120.00261 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 6 1.1393 -1.1323 -2.1981 7 6 1.6001 -1.7833 -3.3269 8 6 2.9539 -2.0122 -3.4888 9 6 3.8467 -1.5895 -2.5220 10 6 3.3861 -0.9351 -1.3945 11 6 4.3601 -0.4693 -0.3431 12 1 3.8561 0.2117 0.3428 13 7 5.4814 0.2267 -0.9882 14 6 4.8884 -1.6769 0.4336 15 6 5.7429 -1.2020 1.5804 16 1 5.8945 -0.1445 1.7392 17 6 6.3322 -2.1175 2.4264 18 7 6.1482 -3.4052 2.2328 19 14 7.3920 -1.5287 3.8475 20 1 6.5787 -0.6765 4.7516 21 1 7.9047 -2.7009 4.6014 22 1 8.5347 -0.7408 3.3196 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 1.8330 1.9011 0.9670 27 1 3.1147 1.4478 -0.1820 28 1 1.5358 2.0062 -0.7848 29 1 2.0568 -1.7959 1.0668 30 1 3.0474 -0.3764 1.4820 31 1 1.3790 -0.5056 2.0885 32 1 0.0818 -0.9531 -2.0718 33 1 0.9026 -2.1125 -4.0829 34 1 3.3140 -2.5205 -4.3709 35 1 4.9043 -1.7679 -2.6486 36 1 6.1158 0.6050 -0.3008 37 1 5.9651 -0.3840 -1.6295 38 1 4.0494 -2.2552 0.8208 39 1 5.4856 -2.3026 -0.2297 40 1 6.5630 -4.0493 2.8278 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:49 Heat of formation + Delta-G solvation = 11.763943 kcal Electronic energy + Delta-G solvation = -18823.928346 eV Core-core repulsion = 16216.873033 eV Total energy + Delta-G solvation = -2607.055313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.97892 -36.01173 -35.36476 -32.49017 -29.92488 -29.44987 -28.18541 -27.20391 -26.57469 -24.34298 -22.33868 -21.92774 -19.55955 -18.96557 -16.74076 -15.95362 -15.34049 -14.65850 -14.53351 -14.05597 -13.89701 -13.78469 -13.38785 -13.23308 -12.50255 -12.26354 -12.09839 -11.92713 -11.73346 -11.60312 -11.45463 -11.19932 -11.02262 -10.85589 -10.60599 -10.48676 -10.25560 -10.20303 -9.88676 -9.54570 -9.05886 -8.45500 -8.32827 -8.15651 -7.57651 -6.07256 -4.11729 1.86105 1.91741 3.27598 3.33109 3.34760 4.25473 4.39412 4.97836 5.13464 5.26500 5.34447 5.38673 5.43771 5.47975 5.59988 5.75352 5.85723 5.91433 6.04223 6.07070 6.08847 6.21877 6.25628 6.35405 6.39990 6.44117 6.53022 6.62548 6.72131 6.86764 6.95555 6.97789 7.06969 7.26341 7.47989 7.53894 7.64304 7.87572 8.10900 8.23764 8.35921 8.95196 9.53238 11.03086 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.007325 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.506938 B = 3821.528869 C = 4307.095866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 C -0.152 4.152 4 C -0.154 4.154 5 C -0.069 4.069 6 C -0.126 4.126 7 C -0.137 4.137 8 C -0.128 4.128 9 C -0.108 4.108 10 C -0.041 4.041 11 C 0.100 3.900 12 H 0.105 0.895 13 N -0.841 5.841 14 C 0.000 4.000 15 C -0.525 4.525 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.344 0.656 37 H 0.327 0.673 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 5.367 -6.936 12.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.208 4.208 4 C -0.211 4.211 5 C -0.070 4.070 6 C -0.143 4.143 7 C -0.155 4.155 8 C -0.146 4.146 9 C -0.127 4.127 10 C -0.042 4.042 11 C -0.010 4.010 12 H 0.122 0.878 13 N -0.369 5.369 14 C -0.038 4.038 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.371 5.686 -7.148 13.086 hybrid contribution 1.224 -0.781 1.207 1.888 sum -8.147 4.905 -5.941 11.213 Atomic orbital electron populations 1.21971 0.94982 1.01517 1.01215 1.19465 0.94800 0.95153 0.93284 1.22162 1.03177 0.94457 1.01044 1.22377 1.02813 1.00902 0.94971 1.19677 0.92851 0.98875 0.95575 1.21038 0.99209 0.99843 0.94258 1.20942 0.95472 1.01082 0.98048 1.21013 0.93533 1.00997 0.99095 1.20910 0.99418 0.98367 0.93992 1.19949 0.93593 0.95534 0.95111 1.21222 0.90285 0.97267 0.92220 0.87793 1.59309 1.14660 1.40223 1.22703 1.19860 0.96398 0.92764 0.94802 1.21108 1.30363 0.92670 1.12148 0.92691 1.24997 0.96492 0.94870 0.97697 1.69958 1.44061 1.00593 1.38205 0.86696 0.80818 0.78158 0.82567 1.20188 1.21346 1.20239 0.92594 0.92800 0.92697 0.92739 0.90088 0.93228 0.92231 0.89279 0.93384 0.86346 0.87041 0.86948 0.86616 0.84295 0.86200 0.95695 0.96878 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.01 37.16 0.26 -1.53 16 2 C -0.03 -0.42 0.75 -155.66 -0.12 -0.54 16 3 C -0.15 -2.26 8.07 37.16 0.30 -1.96 16 4 C -0.15 -2.70 7.15 37.16 0.27 -2.44 16 5 C -0.07 -1.18 4.62 -104.62 -0.48 -1.67 16 6 C -0.13 -1.92 8.99 -39.58 -0.36 -2.28 16 7 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 8 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 9 C -0.11 -1.93 9.18 -39.58 -0.36 -2.29 16 10 C -0.04 -0.78 4.70 -104.63 -0.49 -1.27 16 11 C 0.10 2.01 1.31 -68.87 -0.09 1.92 16 12 H 0.10 2.07 2.50 -51.93 -0.13 1.94 16 13 N -0.84 -15.74 9.10 -5.66 -0.05 -15.79 16 14 C 0.00 0.00 3.71 -27.89 -0.10 -0.10 16 15 C -0.52 -13.84 8.42 -34.44 -0.29 -14.13 16 16 H 0.05 1.40 7.22 -52.48 -0.38 1.02 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.05 0.70 7.78 -51.93 -0.40 0.30 16 24 H 0.05 0.63 7.25 -51.93 -0.38 0.25 16 25 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 26 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 27 H 0.08 1.35 5.19 -51.93 -0.27 1.08 16 28 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 29 H 0.06 1.15 7.05 -51.93 -0.37 0.78 16 30 H 0.09 1.76 4.54 -51.93 -0.24 1.53 16 31 H 0.05 0.75 7.91 -51.93 -0.41 0.33 16 32 H 0.12 1.54 5.91 -52.49 -0.31 1.23 16 33 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.12 2.01 6.99 -52.49 -0.37 1.64 16 36 H 0.34 6.52 7.99 -39.29 -0.31 6.20 16 37 H 0.33 5.94 7.58 -39.29 -0.30 5.64 16 38 H 0.02 0.66 6.46 -51.93 -0.34 0.33 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 303.97 15.07 4.58 4.58 Total: -1.00 -28.56 303.97 -7.98 -36.54 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.86 Total: 13.44 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -2.36 Total: -29.50 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.68 Total: -41.05 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.56 -7.98 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.301 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds