Wall clock time and date at job start Mon Mar 30 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47455 * 2 1 4 4 C 1.53001 * 109.47348 * 120.00566 * 2 1 3 5 5 C 1.50704 * 109.47255 * 240.00244 * 2 1 3 6 6 C 1.38265 * 119.99570 * 5.67403 * 5 2 1 7 7 C 1.38214 * 119.99765 * 179.97438 * 6 5 2 8 8 C 1.38255 * 120.00261 * 359.97438 * 7 6 5 9 9 C 1.38220 * 119.99682 * 359.97438 * 8 7 6 10 10 C 1.38208 * 120.00354 * 185.40073 * 5 2 1 11 11 C 1.50698 * 120.00113 * 359.97438 * 10 5 2 12 12 H 1.09004 * 109.47091 * 347.06861 * 11 10 5 13 13 N 1.46900 * 109.47211 * 227.07520 * 11 10 5 14 14 C 1.52992 * 109.47319 * 107.07041 * 11 10 5 15 15 C 1.50700 * 109.47282 * 186.17728 * 14 11 10 16 16 H 1.08005 * 120.00190 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00147 * 180.02562 * 15 14 11 18 18 N 1.31511 * 120.00168 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99908 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47033 * 60.00105 * 19 17 15 21 21 H 1.48504 * 109.46937 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47334 * 299.99857 * 19 17 15 23 23 H 1.09001 * 109.47437 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47181 * 59.99447 * 1 2 3 25 25 H 1.09005 * 109.46905 * 299.99832 * 1 2 3 26 26 H 1.09003 * 109.46589 * 70.20150 * 3 2 1 27 27 H 1.08992 * 109.46806 * 190.20320 * 3 2 1 28 28 H 1.08996 * 109.47151 * 310.20469 * 3 2 1 29 29 H 1.09000 * 109.47005 * 83.81932 * 4 2 1 30 30 H 1.08995 * 109.47016 * 203.83082 * 4 2 1 31 31 H 1.08998 * 109.46516 * 323.82442 * 4 2 1 32 32 H 1.08000 * 119.99818 * 359.97438 * 6 5 2 33 33 H 1.07999 * 119.99884 * 180.02562 * 7 6 5 34 34 H 1.07993 * 120.00588 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.99656 * 180.02562 * 9 8 7 36 36 H 1.00901 * 110.99907 * 176.04649 * 13 11 10 37 37 H 1.00907 * 110.99447 * 299.99544 * 13 11 10 38 38 H 1.09003 * 109.47265 * 306.17463 * 14 11 10 39 39 H 1.08997 * 109.47289 * 66.17703 * 14 11 10 40 40 H 0.96999 * 120.00261 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 6 1.1393 -1.1323 -2.1981 7 6 1.6001 -1.7833 -3.3269 8 6 2.9539 -2.0122 -3.4888 9 6 3.8467 -1.5895 -2.5220 10 6 3.3861 -0.9351 -1.3945 11 6 4.3601 -0.4693 -0.3431 12 1 3.8561 0.2117 0.3428 13 7 5.4814 0.2267 -0.9882 14 6 4.8884 -1.6769 0.4336 15 6 5.7429 -1.2020 1.5804 16 1 5.8945 -0.1445 1.7392 17 6 6.3322 -2.1175 2.4264 18 7 6.1482 -3.4052 2.2328 19 14 7.3920 -1.5287 3.8475 20 1 6.5787 -0.6765 4.7516 21 1 7.9047 -2.7009 4.6014 22 1 8.5347 -0.7408 3.3196 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 1.8330 1.9011 0.9670 27 1 3.1147 1.4478 -0.1820 28 1 1.5358 2.0062 -0.7848 29 1 2.0568 -1.7959 1.0668 30 1 3.0474 -0.3764 1.4820 31 1 1.3790 -0.5056 2.0885 32 1 0.0818 -0.9531 -2.0718 33 1 0.9026 -2.1125 -4.0829 34 1 3.3140 -2.5205 -4.3709 35 1 4.9043 -1.7679 -2.6486 36 1 6.1158 0.6050 -0.3008 37 1 5.9651 -0.3840 -1.6295 38 1 4.0494 -2.2552 0.8208 39 1 5.4856 -2.3026 -0.2297 40 1 6.5630 -4.0493 2.8278 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:48 Heat of formation + Delta-G solvation = -4.763912 kcal Electronic energy + Delta-G solvation = -18824.645048 eV Core-core repulsion = 16216.873033 eV Total energy + Delta-G solvation = -2607.772015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28821 -37.28048 -36.94435 -34.51111 -31.26668 -30.71120 -30.03092 -28.35553 -27.97237 -26.09548 -23.61175 -23.56474 -21.06877 -20.21917 -18.65202 -17.32681 -16.86682 -16.60432 -15.85222 -15.40809 -15.13118 -15.05108 -14.86961 -14.65011 -14.14596 -14.10062 -13.54131 -13.42576 -13.06751 -12.88996 -12.79162 -12.68018 -12.54048 -12.37671 -12.18686 -11.94938 -11.87263 -11.65714 -11.45406 -11.16301 -10.75792 -10.56567 -9.66380 -9.50308 -9.14590 -8.19904 -6.31454 0.59915 0.63331 1.38883 1.40450 1.48051 2.38700 2.98175 3.12900 3.76238 3.93551 4.00004 4.13513 4.21916 4.27233 4.33525 4.47946 4.55641 4.72309 4.78823 4.87321 4.87961 4.93941 4.95113 5.06940 5.12534 5.17925 5.23378 5.28621 5.39523 5.41284 5.46222 5.53830 5.68796 5.71109 5.74148 5.83929 5.98535 6.18143 6.26645 6.45005 6.72992 6.85255 7.37952 8.90700 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.007325 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.506938 B = 3821.528869 C = 4307.095866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.026 4.026 3 C -0.148 4.148 4 C -0.147 4.147 5 C -0.082 4.082 6 C -0.127 4.127 7 C -0.132 4.132 8 C -0.132 4.132 9 C -0.131 4.131 10 C -0.071 4.071 11 C 0.115 3.885 12 H 0.108 0.892 13 N -0.831 5.831 14 C 0.016 3.984 15 C -0.530 4.530 16 H 0.063 0.937 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.266 1.266 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.342 0.658 37 H 0.329 0.671 38 H -0.006 1.006 39 H -0.021 1.021 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 6.699 -7.505 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 C -0.205 4.205 4 C -0.204 4.204 5 C -0.082 4.082 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.150 4.150 9 C -0.150 4.150 10 C -0.072 4.072 11 C 0.005 3.995 12 H 0.125 0.875 13 N -0.359 5.359 14 C -0.023 4.023 15 C -0.568 4.568 16 H 0.081 0.919 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.012 0.988 39 H -0.003 1.003 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.011 7.040 -7.730 15.185 hybrid contribution 1.701 -1.230 1.321 2.480 sum -9.311 5.810 -6.409 12.709 Atomic orbital electron populations 1.21937 0.92319 1.02129 1.02832 1.19490 0.96888 0.94891 0.91370 1.22104 1.01730 0.94330 1.02287 1.22268 1.01790 0.99247 0.97109 1.19942 0.92392 0.99199 0.96711 1.21412 1.00337 0.98956 0.93736 1.21398 0.95567 0.99535 0.98436 1.21329 0.93911 1.00566 0.99217 1.21036 0.99687 0.99379 0.94857 1.19938 0.94345 0.97523 0.95388 1.20974 0.90820 0.95120 0.92602 0.87482 1.59318 1.14441 1.39813 1.22299 1.19677 0.94545 0.93841 0.94223 1.21491 1.29922 0.93045 1.12383 0.91877 1.25895 0.97981 0.94905 1.00587 1.70109 1.45535 1.01923 1.39531 0.85601 0.79221 0.77657 0.79184 1.19202 1.21432 1.19123 0.92473 0.90987 0.91331 0.91536 0.92422 0.91671 0.95008 0.92097 0.91577 0.83499 0.83453 0.84496 0.87541 0.84572 0.85978 0.98766 1.00293 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 7.01 71.98 0.50 -2.54 16 2 C -0.03 -0.79 0.75 -52.92 -0.04 -0.82 16 3 C -0.15 -4.17 8.07 71.98 0.58 -3.59 16 4 C -0.15 -5.23 7.15 71.98 0.51 -4.72 16 5 C -0.08 -2.72 4.62 -19.86 -0.09 -2.81 16 6 C -0.13 -3.54 8.99 22.27 0.20 -3.34 16 7 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 8 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 9 C -0.13 -4.74 9.18 22.27 0.20 -4.53 16 10 C -0.07 -2.73 4.70 -19.87 -0.09 -2.82 16 11 C 0.12 4.79 1.31 44.17 0.06 4.85 16 12 H 0.11 4.40 2.50 -2.38 -0.01 4.40 16 13 N -0.83 -32.01 9.10 -171.81 -1.56 -33.57 16 14 C 0.02 0.81 3.71 29.85 0.11 0.92 16 15 C -0.53 -28.83 8.42 25.60 0.22 -28.61 16 16 H 0.06 3.25 7.22 -2.91 -0.02 3.23 16 17 C 0.00 0.25 5.46 84.66 0.46 0.71 16 18 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 19 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H 0.06 1.27 7.78 -2.39 -0.02 1.25 16 24 H 0.07 1.37 7.25 -2.39 -0.02 1.36 16 25 H 0.07 1.36 8.12 -2.38 -0.02 1.34 16 26 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 27 H 0.06 1.90 5.19 -2.39 -0.01 1.89 16 28 H 0.06 1.62 8.11 -2.39 -0.02 1.60 16 29 H 0.03 1.27 7.05 -2.39 -0.02 1.25 16 30 H 0.06 2.49 4.54 -2.39 -0.01 2.48 16 31 H 0.07 2.02 7.91 -2.39 -0.02 2.01 16 32 H 0.15 3.21 5.91 -2.91 -0.02 3.19 16 33 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.11 3.89 6.99 -2.91 -0.02 3.87 16 36 H 0.34 13.23 7.99 -89.69 -0.72 12.52 16 37 H 0.33 12.45 7.58 -89.69 -0.68 11.77 16 38 H -0.01 -0.34 6.46 -2.39 -0.02 -0.36 16 39 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -63.47 303.97 3.48 -59.99 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.34 Total: 38.23 kcal Atomic # 6 Polarization: -57.32 SS G_CDS: 3.07 Total: -54.25 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -1.28 Total: -89.64 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -63.47 3.48 -59.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.226 kcal (2) G-P(sol) polarization free energy of solvation -63.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds