Wall clock time and date at job start Mon Mar 30 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53011 * 109.46676 * 2 1 4 4 C 1.52994 * 109.46908 * 119.99423 * 2 1 3 5 5 C 1.50694 * 109.47331 * 239.99866 * 2 1 3 6 6 C 1.38253 * 120.00385 * 31.97995 * 5 2 1 7 7 C 1.38214 * 120.00363 * 179.97438 * 6 5 2 8 8 C 1.38258 * 119.99643 * 0.02562 * 7 6 5 9 9 C 1.38207 * 120.00283 * 359.97438 * 8 7 6 10 10 C 1.38215 * 120.00163 * 211.70023 * 5 2 1 11 11 C 1.50710 * 119.99546 * 0.02562 * 10 5 2 12 12 H 1.09000 * 109.46817 * 49.59391 * 11 10 5 13 13 N 1.46901 * 109.46931 * 169.59266 * 11 10 5 14 14 C 1.52998 * 109.46990 * 289.58921 * 11 10 5 15 15 C 1.50699 * 109.46972 * 184.08271 * 14 11 10 16 16 H 1.08007 * 119.99970 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00307 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99770 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00443 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46804 * 89.99597 * 19 17 15 21 21 H 1.48491 * 109.47365 * 209.99990 * 19 17 15 22 22 H 1.48504 * 109.46810 * 330.00089 * 19 17 15 23 23 H 1.09004 * 109.47464 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47269 * 60.00402 * 1 2 3 25 25 H 1.09000 * 109.47651 * 300.00246 * 1 2 3 26 26 H 1.08993 * 109.47059 * 91.03797 * 3 2 1 27 27 H 1.08998 * 109.46320 * 211.03661 * 3 2 1 28 28 H 1.08998 * 109.46989 * 331.03558 * 3 2 1 29 29 H 1.09002 * 109.47130 * 82.14876 * 4 2 1 30 30 H 1.09003 * 109.47333 * 202.14010 * 4 2 1 31 31 H 1.08997 * 109.47480 * 322.14287 * 4 2 1 32 32 H 1.08002 * 119.99861 * 359.97438 * 6 5 2 33 33 H 1.08003 * 120.00043 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.99409 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.00313 * 179.97438 * 9 8 7 36 36 H 1.00900 * 110.99797 * 59.99680 * 13 11 10 37 37 H 1.00899 * 111.00223 * 183.95091 * 13 11 10 38 38 H 1.08997 * 109.47650 * 304.08220 * 14 11 10 39 39 H 1.09002 * 109.46886 * 64.08938 * 14 11 10 40 40 H 0.97001 * 119.99980 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 2.0323 -0.7104 -1.2304 6 6 1.3053 -0.6565 -2.4051 7 6 1.7664 -1.3076 -3.5337 8 6 2.9544 -2.0133 -3.4878 9 6 3.6812 -2.0673 -2.3135 10 6 3.2228 -1.4111 -1.1862 11 6 4.0182 -1.4652 0.0928 12 1 3.3627 -1.7473 0.9167 13 7 5.0925 -2.4583 -0.0403 14 6 4.6270 -0.0899 0.3732 15 6 5.5034 -0.1685 1.5967 16 1 5.6153 -1.1058 2.1215 17 6 6.1624 0.9561 2.0461 18 7 6.0258 2.0976 1.4074 19 14 7.2493 0.8586 3.5622 20 1 8.6351 0.5121 3.1562 21 1 7.2503 2.1715 4.2560 22 1 6.7265 -0.1857 4.4796 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 0.5139 0.8899 26 1 2.1785 1.7790 1.0274 27 1 2.9911 1.4916 -0.5299 28 1 1.3132 2.0848 -0.4977 29 1 2.0286 -1.7975 1.0776 30 1 3.0585 -0.3983 1.4648 31 1 1.3961 -0.4814 2.0955 32 1 0.3771 -0.1055 -2.4409 33 1 1.1982 -1.2658 -4.4513 34 1 3.3144 -2.5224 -4.3696 35 1 4.6089 -2.6189 -2.2774 36 1 5.7142 -2.2190 -0.7981 37 1 5.6003 -2.5599 0.8257 38 1 5.2249 0.2242 -0.4823 39 1 3.8290 0.6328 0.5439 40 1 6.4897 2.8888 1.7234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:51 Heat of formation + Delta-G solvation = 57.285120 kcal Electronic energy + Delta-G solvation = -19061.740806 eV Core-core repulsion = 16456.659440 eV Total energy + Delta-G solvation = -2605.081367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.20987 -36.28633 -35.20264 -32.49204 -29.77846 -29.42668 -28.67807 -27.05067 -26.52960 -24.16431 -22.29053 -21.75856 -19.58911 -18.95958 -16.70058 -15.87638 -15.33963 -14.72031 -14.51676 -14.10466 -13.83353 -13.59065 -13.43683 -13.01026 -12.68457 -12.35702 -12.04972 -11.75106 -11.62436 -11.47880 -11.43531 -11.05708 -10.86587 -10.77633 -10.62455 -10.32798 -10.17067 -9.80987 -9.64193 -9.36234 -8.82402 -8.40794 -8.25210 -8.07386 -7.49414 -6.08209 -4.11652 1.89978 1.95804 3.25830 3.33513 3.35660 4.29698 4.39411 5.07894 5.18654 5.26367 5.40276 5.47135 5.50776 5.57976 5.61784 5.81505 5.95820 6.03350 6.08320 6.19508 6.25106 6.26808 6.41155 6.48030 6.51101 6.55546 6.70195 6.73062 6.84045 6.95210 6.99821 7.02872 7.09052 7.35394 7.52286 7.57509 7.69294 7.88496 8.18333 8.26497 8.40661 8.95014 9.52803 11.01879 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.007776 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.331754 B = 3599.752756 C = 4138.946433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.021 4.021 3 C -0.140 4.140 4 C -0.189 4.189 5 C -0.069 4.069 6 C -0.123 4.123 7 C -0.139 4.139 8 C -0.133 4.133 9 C -0.111 4.111 10 C -0.048 4.048 11 C 0.071 3.929 12 H 0.129 0.871 13 N -0.843 5.843 14 C -0.026 4.026 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.042 0.958 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.324 0.676 37 H 0.344 0.656 38 H 0.011 0.989 39 H 0.061 0.939 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 -4.555 -5.111 10.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 C -0.197 4.197 4 C -0.244 4.244 5 C -0.069 4.069 6 C -0.141 4.141 7 C -0.157 4.157 8 C -0.151 4.151 9 C -0.129 4.129 10 C -0.049 4.049 11 C -0.038 4.038 12 H 0.145 0.855 13 N -0.372 5.372 14 C -0.063 4.063 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.061 0.939 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.029 0.971 39 H 0.078 0.922 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.135 -4.893 -5.241 11.613 hybrid contribution 1.370 0.914 0.797 1.829 sum -7.765 -3.979 -4.445 9.792 Atomic orbital electron populations 1.21999 0.95038 1.01280 1.01213 1.19407 0.94421 0.95602 0.92682 1.22091 1.01424 0.93518 1.02701 1.23324 1.05941 0.99447 0.95717 1.19705 0.94590 0.97798 0.94833 1.20940 0.99947 1.00512 0.92720 1.20934 0.97113 0.99771 0.97907 1.21040 0.95797 1.00463 0.97771 1.21022 1.00204 0.99490 0.92174 1.20069 0.93820 0.94762 0.96220 1.22147 0.93014 0.94005 0.94675 0.85453 1.59429 1.17153 1.50061 1.10512 1.20355 0.97201 0.92337 0.96440 1.21161 1.28303 0.95431 1.11494 0.92608 1.24975 0.96632 0.95521 0.96874 1.69963 1.42806 1.00035 1.39832 0.86653 0.80993 0.77418 0.83298 1.20803 1.21291 1.19825 0.92972 0.92865 0.92679 0.91838 0.90532 0.93897 0.92163 0.85525 0.93858 0.86638 0.87160 0.87101 0.85719 0.86469 0.84264 0.97080 0.92153 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.55 37.16 0.28 -1.62 16 2 C -0.02 -0.35 0.69 -155.66 -0.11 -0.46 16 3 C -0.14 -2.53 7.52 37.16 0.28 -2.25 16 4 C -0.19 -3.32 6.44 37.15 0.24 -3.08 16 5 C -0.07 -1.21 4.41 -104.63 -0.46 -1.67 16 6 C -0.12 -1.94 9.14 -39.58 -0.36 -2.30 16 7 C -0.14 -2.08 10.05 -39.58 -0.40 -2.47 16 8 C -0.13 -2.06 10.05 -39.59 -0.40 -2.46 16 9 C -0.11 -1.95 9.21 -39.59 -0.36 -2.31 16 10 C -0.05 -0.91 4.98 -104.62 -0.52 -1.43 16 11 C 0.07 1.43 2.28 -68.86 -0.16 1.28 16 12 H 0.13 2.55 3.30 -71.72 -0.24 2.31 16 13 N -0.84 -15.97 8.31 -5.65 -0.05 -16.02 16 14 C -0.03 -0.61 3.11 -27.88 -0.09 -0.70 16 15 C -0.53 -13.55 8.07 -34.44 -0.28 -13.83 16 16 H 0.06 1.39 6.57 -52.48 -0.34 1.05 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.67 6.48 -51.93 -0.34 0.33 16 25 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.06 1.19 7.72 -51.93 -0.40 0.79 16 27 H 0.08 1.60 6.04 -51.93 -0.31 1.29 16 28 H 0.04 0.67 7.80 -51.93 -0.41 0.27 16 29 H 0.06 1.04 6.12 -51.93 -0.32 0.73 16 30 H 0.13 2.61 3.03 -51.93 -0.16 2.45 16 31 H 0.04 0.69 7.94 -51.93 -0.41 0.28 16 32 H 0.12 1.58 6.22 -52.49 -0.33 1.25 16 33 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.12 2.10 6.29 -52.49 -0.33 1.77 16 36 H 0.32 6.06 7.60 -39.29 -0.30 5.76 16 37 H 0.34 6.62 7.33 -39.29 -0.29 6.33 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 1.45 2.54 -51.93 -0.13 1.31 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -27.57 295.24 -7.86 -35.44 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -5.55 Total: 16.63 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: -2.43 Total: -31.73 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.69 Total: -40.53 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.57 -7.86 -35.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.721 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds