Wall clock time and date at job start Mon Mar 30 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53011 * 109.46676 * 2 1 4 4 C 1.52994 * 109.46908 * 119.99423 * 2 1 3 5 5 C 1.50694 * 109.47331 * 239.99866 * 2 1 3 6 6 C 1.38253 * 120.00385 * 31.97995 * 5 2 1 7 7 C 1.38214 * 120.00363 * 179.97438 * 6 5 2 8 8 C 1.38258 * 119.99643 * 0.02562 * 7 6 5 9 9 C 1.38207 * 120.00283 * 359.97438 * 8 7 6 10 10 C 1.38215 * 120.00163 * 211.70023 * 5 2 1 11 11 C 1.50710 * 119.99546 * 0.02562 * 10 5 2 12 12 H 1.09000 * 109.46817 * 49.59391 * 11 10 5 13 13 N 1.46901 * 109.46931 * 169.59266 * 11 10 5 14 14 C 1.52998 * 109.46990 * 289.58921 * 11 10 5 15 15 C 1.50699 * 109.46972 * 184.08271 * 14 11 10 16 16 H 1.08007 * 119.99970 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00307 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99770 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00443 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46804 * 89.99597 * 19 17 15 21 21 H 1.48491 * 109.47365 * 209.99990 * 19 17 15 22 22 H 1.48504 * 109.46810 * 330.00089 * 19 17 15 23 23 H 1.09004 * 109.47464 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47269 * 60.00402 * 1 2 3 25 25 H 1.09000 * 109.47651 * 300.00246 * 1 2 3 26 26 H 1.08993 * 109.47059 * 91.03797 * 3 2 1 27 27 H 1.08998 * 109.46320 * 211.03661 * 3 2 1 28 28 H 1.08998 * 109.46989 * 331.03558 * 3 2 1 29 29 H 1.09002 * 109.47130 * 82.14876 * 4 2 1 30 30 H 1.09003 * 109.47333 * 202.14010 * 4 2 1 31 31 H 1.08997 * 109.47480 * 322.14287 * 4 2 1 32 32 H 1.08002 * 119.99861 * 359.97438 * 6 5 2 33 33 H 1.08003 * 120.00043 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.99409 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.00313 * 179.97438 * 9 8 7 36 36 H 1.00900 * 110.99797 * 59.99680 * 13 11 10 37 37 H 1.00899 * 111.00223 * 183.95091 * 13 11 10 38 38 H 1.08997 * 109.47650 * 304.08220 * 14 11 10 39 39 H 1.09002 * 109.46886 * 64.08938 * 14 11 10 40 40 H 0.97001 * 119.99980 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 2.0323 -0.7104 -1.2304 6 6 1.3053 -0.6565 -2.4051 7 6 1.7664 -1.3076 -3.5337 8 6 2.9544 -2.0133 -3.4878 9 6 3.6812 -2.0673 -2.3135 10 6 3.2228 -1.4111 -1.1862 11 6 4.0182 -1.4652 0.0928 12 1 3.3627 -1.7473 0.9167 13 7 5.0925 -2.4583 -0.0403 14 6 4.6270 -0.0899 0.3732 15 6 5.5034 -0.1685 1.5967 16 1 5.6153 -1.1058 2.1215 17 6 6.1624 0.9561 2.0461 18 7 6.0258 2.0976 1.4074 19 14 7.2493 0.8586 3.5622 20 1 8.6351 0.5121 3.1562 21 1 7.2503 2.1715 4.2560 22 1 6.7265 -0.1857 4.4796 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 0.5139 0.8899 26 1 2.1785 1.7790 1.0274 27 1 2.9911 1.4916 -0.5299 28 1 1.3132 2.0848 -0.4977 29 1 2.0286 -1.7975 1.0776 30 1 3.0585 -0.3983 1.4648 31 1 1.3961 -0.4814 2.0955 32 1 0.3771 -0.1055 -2.4409 33 1 1.1982 -1.2658 -4.4513 34 1 3.3144 -2.5224 -4.3696 35 1 4.6089 -2.6189 -2.2774 36 1 5.7142 -2.2190 -0.7981 37 1 5.6003 -2.5599 0.8257 38 1 5.2249 0.2242 -0.4823 39 1 3.8290 0.6328 0.5439 40 1 6.4897 2.8888 1.7234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:51 Heat of formation + Delta-G solvation = 41.791373 kcal Electronic energy + Delta-G solvation = -19062.412666 eV Core-core repulsion = 16456.659440 eV Total energy + Delta-G solvation = -2605.753226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57851 -37.65320 -36.69739 -34.46914 -31.14132 -30.71437 -30.30624 -28.57420 -27.98189 -25.84862 -23.66620 -23.27045 -21.09590 -20.27820 -18.60717 -17.26134 -16.83932 -16.60255 -15.90202 -15.45513 -15.27805 -14.91108 -14.85087 -14.55355 -14.28265 -13.93488 -13.64581 -13.16491 -13.04959 -12.96164 -12.77243 -12.70500 -12.47801 -12.27355 -12.12137 -11.81212 -11.67114 -11.48315 -11.21097 -11.06675 -10.45423 -10.42938 -9.55259 -9.48319 -9.04529 -8.15647 -6.24631 0.62914 0.67541 1.39109 1.40713 1.50211 2.41009 3.02301 3.17460 3.78758 3.94616 3.99278 4.18381 4.28316 4.31213 4.35610 4.48029 4.70389 4.71282 4.79586 4.87277 4.91014 4.94166 5.05602 5.09558 5.18291 5.19724 5.28629 5.35567 5.40863 5.49018 5.53208 5.61359 5.72574 5.74800 5.81401 5.92456 6.01915 6.24339 6.30591 6.55570 6.78211 6.92133 7.43031 8.94526 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.007776 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.331754 B = 3599.752756 C = 4138.946433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.020 4.020 3 C -0.132 4.132 4 C -0.184 4.184 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.135 4.135 9 C -0.128 4.128 10 C -0.079 4.079 11 C 0.082 3.918 12 H 0.130 0.870 13 N -0.834 5.834 14 C -0.013 4.013 15 C -0.529 4.529 16 H 0.061 0.939 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.953 3.047 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.263 1.263 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.324 0.676 37 H 0.340 0.660 38 H -0.034 1.034 39 H 0.059 0.941 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.302 -5.380 -5.744 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.020 4.020 3 C -0.189 4.189 4 C -0.240 4.240 5 C -0.083 4.083 6 C -0.144 4.144 7 C -0.151 4.151 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.079 4.079 11 C -0.028 4.028 12 H 0.147 0.853 13 N -0.362 5.362 14 C -0.051 4.051 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.779 3.221 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.187 1.187 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.154 0.846 38 H -0.016 1.016 39 H 0.077 0.923 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.840 -5.740 -5.873 13.600 hybrid contribution 1.879 1.158 0.918 2.391 sum -8.961 -4.583 -4.955 11.219 Atomic orbital electron populations 1.21948 0.92186 1.02232 1.02558 1.19401 0.96620 0.94019 0.91937 1.21970 1.00268 0.95419 1.01286 1.23156 1.04236 0.99549 0.97016 1.19884 0.94523 0.97896 0.96005 1.21274 1.00577 1.00387 0.92131 1.21378 0.96734 0.98106 0.98915 1.21377 0.95807 1.00285 0.97773 1.21162 1.00678 0.99907 0.92848 1.20076 0.94878 0.96968 0.96006 1.21946 0.93130 0.91676 0.96033 0.85344 1.59443 1.16974 1.49476 1.10269 1.20239 0.96288 0.94806 0.93763 1.21547 1.27889 0.95446 1.11876 0.92047 1.25787 0.98205 0.95298 0.99783 1.70102 1.44173 1.00697 1.41583 0.85628 0.79105 0.77420 0.79946 1.20571 1.21368 1.18704 0.92185 0.91177 0.91739 0.93470 0.94270 0.91463 0.92001 0.88925 0.92491 0.84111 0.83660 0.84387 0.85951 0.86444 0.84645 1.01610 0.92341 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 7.55 71.98 0.54 -2.71 16 2 C -0.02 -0.64 0.69 -52.93 -0.04 -0.68 16 3 C -0.13 -4.81 7.52 71.99 0.54 -4.27 16 4 C -0.18 -6.45 6.44 71.98 0.46 -5.99 16 5 C -0.08 -2.82 4.41 -19.87 -0.09 -2.91 16 6 C -0.13 -3.61 9.14 22.27 0.20 -3.40 16 7 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 8 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 9 C -0.13 -4.43 9.21 22.27 0.21 -4.22 16 10 C -0.08 -2.99 4.98 -19.86 -0.10 -3.09 16 11 C 0.08 3.39 2.28 44.17 0.10 3.49 16 12 H 0.13 5.25 3.30 -20.98 -0.07 5.18 16 13 N -0.83 -32.32 8.31 -171.79 -1.43 -33.75 16 14 C -0.01 -0.66 3.11 29.85 0.09 -0.56 16 15 C -0.53 -28.10 8.07 25.60 0.21 -27.89 16 16 H 0.06 3.12 6.57 -2.91 -0.02 3.10 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 19 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 24 H 0.07 1.49 6.48 -2.38 -0.02 1.47 16 25 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 26 H 0.05 1.82 7.72 -2.39 -0.02 1.80 16 27 H 0.04 1.70 6.04 -2.39 -0.01 1.68 16 28 H 0.07 2.04 7.80 -2.39 -0.02 2.02 16 29 H 0.06 2.13 6.12 -2.39 -0.01 2.11 16 30 H 0.09 3.92 3.03 -2.39 -0.01 3.91 16 31 H 0.06 1.78 7.94 -2.39 -0.02 1.76 16 32 H 0.14 3.26 6.22 -2.91 -0.02 3.24 16 33 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.12 4.15 6.29 -2.91 -0.02 4.13 16 36 H 0.32 12.53 7.60 -89.69 -0.68 11.85 16 37 H 0.34 13.37 7.33 -89.70 -0.66 12.71 16 38 H -0.03 -2.00 8.14 -2.39 -0.02 -2.02 16 39 H 0.06 2.95 2.54 -2.39 -0.01 2.95 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -60.91 295.24 3.59 -57.31 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: -0.33 Total: 43.61 kcal Atomic # 6 Polarization: -61.33 SS G_CDS: 3.04 Total: -58.29 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -1.14 Total: -87.96 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -60.91 3.59 -57.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.104 kcal (2) G-P(sol) polarization free energy of solvation -60.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds