Wall clock time and date at job start Mon Mar 30 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47042 * 2 1 4 4 C 1.53002 * 109.46660 * 240.00862 * 2 1 3 5 5 C 1.50696 * 109.47732 * 120.00924 * 2 1 3 6 6 C 1.38255 * 119.99730 * 1.61289 * 5 2 1 7 7 C 1.38218 * 119.99904 * 180.23002 * 6 5 2 8 8 C 1.38261 * 119.99525 * 359.81829 * 7 6 5 9 9 C 1.38210 * 120.00116 * 359.97438 * 8 7 6 10 10 C 1.38208 * 119.99968 * 181.41039 * 5 2 1 11 11 C 1.50703 * 120.00121 * 359.97438 * 10 5 2 12 12 H 1.08994 * 109.47081 * 355.26278 * 11 10 5 13 13 C 1.50702 * 109.47068 * 235.26141 * 11 10 5 14 14 H 1.08005 * 120.00069 * 326.41939 * 13 11 10 15 15 C 1.37879 * 120.00083 * 146.42433 * 13 11 10 16 16 N 1.31516 * 119.99358 * 353.35384 * 15 13 11 17 17 Si 1.86796 * 119.99971 * 173.35113 * 15 13 11 18 18 H 1.48493 * 109.47431 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46973 * 120.00276 * 17 15 13 20 20 H 1.48501 * 109.46951 * 240.00047 * 17 15 13 21 21 C 1.53000 * 109.47000 * 115.26423 * 11 10 5 22 22 N 1.46900 * 109.46997 * 183.82041 * 21 11 10 23 23 H 1.09005 * 109.46472 * 299.98978 * 1 2 3 24 24 H 1.08990 * 109.47829 * 59.99115 * 1 2 3 25 25 H 1.09004 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46945 * 170.82537 * 3 2 1 27 27 H 1.08998 * 109.47847 * 290.83179 * 3 2 1 28 28 H 1.09004 * 109.46732 * 50.83090 * 3 2 1 29 29 H 1.09006 * 109.47156 * 313.74504 * 4 2 1 30 30 H 1.09006 * 109.47272 * 73.74294 * 4 2 1 31 31 H 1.08998 * 109.47304 * 193.74448 * 4 2 1 32 32 H 1.07999 * 120.00228 * 0.07030 * 6 5 2 33 33 H 1.07996 * 120.00203 * 179.83273 * 7 6 5 34 34 H 1.08007 * 119.99803 * 179.97438 * 8 7 6 35 35 H 1.08007 * 119.99646 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99541 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47618 * 63.81755 * 21 11 10 38 38 H 1.09005 * 109.46976 * 303.81566 * 21 11 10 39 39 H 1.00896 * 111.00502 * 56.04130 * 22 21 11 40 40 H 1.00898 * 110.99877 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0325 -0.7106 1.2303 6 6 1.1346 -1.2653 2.1233 7 6 1.5953 -1.9129 3.2541 8 6 2.9542 -2.0091 3.4902 9 6 3.8518 -1.4583 2.5952 10 6 3.3910 -0.8113 1.4637 11 6 4.3698 -0.2112 0.4876 12 1 3.8295 0.1821 -0.3734 13 6 5.3384 -1.2717 0.0312 14 1 5.6420 -2.0542 0.7109 15 6 5.8371 -1.2429 -1.2539 16 7 5.3707 -0.3707 -2.1207 17 14 7.1751 -2.4426 -1.7636 18 1 7.5244 -3.3130 -0.6123 19 1 6.6865 -3.2806 -2.8880 20 1 8.3786 -1.6875 -2.1956 21 6 5.1388 0.9228 1.1686 22 7 6.0270 1.5675 0.1922 23 1 -0.3632 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 3.1176 1.4469 0.1639 27 1 1.8166 1.9070 -0.9604 28 1 1.5491 2.0014 0.7968 29 1 1.4910 -1.6538 -1.3801 30 1 1.8897 -0.0858 -2.1223 31 1 3.1021 -0.9375 -1.1359 32 1 0.0731 -1.1903 1.9386 33 1 0.8938 -2.3438 3.9531 34 1 3.3142 -2.5148 4.3741 35 1 4.9133 -1.5332 2.7800 36 1 5.7218 -0.3502 -3.0248 37 1 5.7326 0.5182 1.9883 38 1 4.4337 1.6570 1.5585 39 1 5.5076 1.8941 -0.6088 40 1 6.5461 2.3208 0.6178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260225209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:04 Heat of formation + Delta-G solvation = 23.689820 kcal Electronic energy + Delta-G solvation = -19253.385049 eV Core-core repulsion = 16646.846880 eV Total energy + Delta-G solvation = -2606.538168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.65177 -35.73417 -34.98621 -31.88947 -30.94238 -29.24338 -27.18267 -26.76555 -26.42283 -23.98423 -22.01359 -21.74811 -19.47204 -18.62313 -16.44455 -15.83262 -14.71594 -14.52482 -14.36386 -13.87911 -13.64839 -13.53379 -13.35507 -12.96030 -12.27952 -12.13700 -11.99423 -11.75955 -11.46264 -11.25195 -11.11680 -10.95291 -10.80897 -10.66453 -10.30793 -10.27677 -10.23661 -9.96981 -9.66396 -9.27544 -8.52202 -8.23940 -8.01207 -7.64928 -7.30902 -5.90562 -3.86428 2.14950 2.24232 3.39336 3.47651 3.51428 4.51450 4.63160 5.27903 5.39838 5.47234 5.60298 5.63147 5.69714 5.77378 5.86387 6.07474 6.08330 6.22489 6.28266 6.34392 6.39838 6.44723 6.51644 6.58421 6.66106 6.70869 6.72754 6.90138 6.94620 7.00005 7.12554 7.22817 7.38665 7.41273 7.67629 7.82918 7.95540 8.06832 8.33881 8.56853 8.66541 9.14007 9.75006 11.19691 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.009495 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.688893 B = 2948.227284 C = 3282.273332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 C -0.157 4.157 4 C -0.164 4.164 5 C -0.081 4.081 6 C -0.128 4.128 7 C -0.149 4.149 8 C -0.133 4.133 9 C -0.115 4.115 10 C -0.028 4.028 11 C 0.036 3.964 12 H 0.107 0.893 13 C -0.495 4.495 14 H 0.049 0.951 15 C 0.087 3.913 16 N -0.881 5.881 17 Si 0.885 3.115 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.081 3.919 22 N -0.820 5.820 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.257 0.743 37 H 0.047 0.953 38 H -0.016 1.016 39 H 0.342 0.658 40 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 2.233 5.156 9.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 C -0.214 4.214 4 C -0.220 4.220 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.168 4.168 8 C -0.152 4.152 9 C -0.133 4.133 10 C -0.029 4.029 11 C 0.018 3.982 12 H 0.124 0.876 13 C -0.533 4.533 14 H 0.068 0.932 15 C -0.115 4.115 16 N -0.519 5.519 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.050 4.050 22 N -0.348 5.348 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.002 0.998 39 H 0.156 0.844 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.744 1.572 4.904 8.485 hybrid contribution 0.169 0.057 0.014 0.179 sum -6.575 1.629 4.918 8.371 Atomic orbital electron populations 1.21978 0.95801 1.01086 1.00820 1.19341 0.93901 0.95058 0.93705 1.22352 1.04070 0.94569 1.00409 1.22406 1.06756 0.98253 0.94596 1.19770 0.93178 0.99285 0.95827 1.21009 0.98928 0.99695 0.94998 1.20832 0.95335 1.02369 0.98219 1.21012 0.93543 1.01145 0.99458 1.21045 0.99329 0.98393 0.94556 1.20464 0.93624 0.94464 0.94309 1.18756 0.92326 0.93457 0.93651 0.87554 1.20814 1.25102 1.10204 0.97140 0.93239 1.24682 0.95641 0.94896 0.96311 1.69803 1.41819 1.35901 1.04387 0.86674 0.82784 0.81022 0.78103 1.20248 1.21678 1.21177 1.22010 0.93278 0.95449 0.94283 1.58374 1.32110 1.34195 1.10081 0.93164 0.93044 0.92871 0.89293 0.93082 0.94060 0.94547 0.93543 0.85630 0.86896 0.87614 0.87538 0.86509 0.93320 0.93481 0.99773 0.84429 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.08 37.16 0.26 -1.84 16 2 C -0.02 -0.36 0.75 -155.66 -0.12 -0.48 16 3 C -0.16 -2.80 8.05 37.16 0.30 -2.50 16 4 C -0.16 -3.32 8.07 37.16 0.30 -3.02 16 5 C -0.08 -1.57 4.76 -104.63 -0.50 -2.07 16 6 C -0.13 -2.25 8.98 -39.58 -0.36 -2.60 16 7 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 8 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 9 C -0.12 -2.32 8.64 -39.59 -0.34 -2.66 16 10 C -0.03 -0.59 4.51 -104.63 -0.47 -1.07 16 11 C 0.04 0.82 0.45 -92.92 -0.04 0.78 16 12 H 0.11 2.47 2.16 -51.93 -0.11 2.36 16 13 C -0.49 -12.85 7.29 -34.44 -0.25 -13.10 16 14 H 0.05 1.33 7.10 -52.48 -0.37 0.96 16 15 C 0.09 2.28 5.01 -17.82 -0.09 2.20 16 16 N -0.88 -22.99 11.97 55.43 0.66 -22.33 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.08 1.74 5.31 -3.82 -0.02 1.72 16 22 N -0.82 -17.22 9.04 -10.37 -0.09 -17.32 16 23 H 0.05 0.70 7.59 -51.93 -0.39 0.30 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.77 7.43 -51.93 -0.39 0.38 16 26 H 0.09 1.75 3.13 -51.93 -0.16 1.59 16 27 H 0.05 0.85 7.99 -51.93 -0.42 0.43 16 28 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.05 0.90 7.96 -51.93 -0.41 0.49 16 31 H 0.13 2.98 3.59 -51.93 -0.19 2.79 16 32 H 0.11 1.72 5.90 -52.49 -0.31 1.41 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.12 2.37 7.50 -52.48 -0.39 1.97 16 36 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.05 1.03 7.80 -51.93 -0.40 0.62 16 38 H -0.02 -0.32 7.25 -51.93 -0.38 -0.69 16 39 H 0.34 7.35 8.89 -39.29 -0.35 7.00 16 40 H 0.31 5.54 9.08 -39.29 -0.36 5.18 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -26.61 302.98 -7.88 -34.50 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -5.88 Total: 14.56 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: -2.12 Total: -30.29 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.57 Total: -39.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.61 -7.88 -34.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.186 kcal (2) G-P(sol) polarization free energy of solvation -26.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds