Wall clock time and date at job start Mon Mar 30 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47042 * 2 1 4 4 C 1.53002 * 109.46660 * 240.00862 * 2 1 3 5 5 C 1.50696 * 109.47732 * 120.00924 * 2 1 3 6 6 C 1.38255 * 119.99730 * 1.61289 * 5 2 1 7 7 C 1.38218 * 119.99904 * 180.23002 * 6 5 2 8 8 C 1.38261 * 119.99525 * 359.81829 * 7 6 5 9 9 C 1.38210 * 120.00116 * 359.97438 * 8 7 6 10 10 C 1.38208 * 119.99968 * 181.41039 * 5 2 1 11 11 C 1.50703 * 120.00121 * 359.97438 * 10 5 2 12 12 H 1.08994 * 109.47081 * 355.26278 * 11 10 5 13 13 C 1.50702 * 109.47068 * 235.26141 * 11 10 5 14 14 H 1.08005 * 120.00069 * 326.41939 * 13 11 10 15 15 C 1.37879 * 120.00083 * 146.42433 * 13 11 10 16 16 N 1.31516 * 119.99358 * 353.35384 * 15 13 11 17 17 Si 1.86796 * 119.99971 * 173.35113 * 15 13 11 18 18 H 1.48493 * 109.47431 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46973 * 120.00276 * 17 15 13 20 20 H 1.48501 * 109.46951 * 240.00047 * 17 15 13 21 21 C 1.53000 * 109.47000 * 115.26423 * 11 10 5 22 22 N 1.46900 * 109.46997 * 183.82041 * 21 11 10 23 23 H 1.09005 * 109.46472 * 299.98978 * 1 2 3 24 24 H 1.08990 * 109.47829 * 59.99115 * 1 2 3 25 25 H 1.09004 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46945 * 170.82537 * 3 2 1 27 27 H 1.08998 * 109.47847 * 290.83179 * 3 2 1 28 28 H 1.09004 * 109.46732 * 50.83090 * 3 2 1 29 29 H 1.09006 * 109.47156 * 313.74504 * 4 2 1 30 30 H 1.09006 * 109.47272 * 73.74294 * 4 2 1 31 31 H 1.08998 * 109.47304 * 193.74448 * 4 2 1 32 32 H 1.07999 * 120.00228 * 0.07030 * 6 5 2 33 33 H 1.07996 * 120.00203 * 179.83273 * 7 6 5 34 34 H 1.08007 * 119.99803 * 179.97438 * 8 7 6 35 35 H 1.08007 * 119.99646 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99541 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47618 * 63.81755 * 21 11 10 38 38 H 1.09005 * 109.46976 * 303.81566 * 21 11 10 39 39 H 1.00896 * 111.00502 * 56.04130 * 22 21 11 40 40 H 1.00898 * 110.99877 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0325 -0.7106 1.2303 6 6 1.1346 -1.2653 2.1233 7 6 1.5953 -1.9129 3.2541 8 6 2.9542 -2.0091 3.4902 9 6 3.8518 -1.4583 2.5952 10 6 3.3910 -0.8113 1.4637 11 6 4.3698 -0.2112 0.4876 12 1 3.8295 0.1821 -0.3734 13 6 5.3384 -1.2717 0.0312 14 1 5.6420 -2.0542 0.7109 15 6 5.8371 -1.2429 -1.2539 16 7 5.3707 -0.3707 -2.1207 17 14 7.1751 -2.4426 -1.7636 18 1 7.5244 -3.3130 -0.6123 19 1 6.6865 -3.2806 -2.8880 20 1 8.3786 -1.6875 -2.1956 21 6 5.1388 0.9228 1.1686 22 7 6.0270 1.5675 0.1922 23 1 -0.3632 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 3.1176 1.4469 0.1639 27 1 1.8166 1.9070 -0.9604 28 1 1.5491 2.0014 0.7968 29 1 1.4910 -1.6538 -1.3801 30 1 1.8897 -0.0858 -2.1223 31 1 3.1021 -0.9375 -1.1359 32 1 0.0731 -1.1903 1.9386 33 1 0.8938 -2.3438 3.9531 34 1 3.3142 -2.5148 4.3741 35 1 4.9133 -1.5332 2.7800 36 1 5.7218 -0.3502 -3.0248 37 1 5.7326 0.5182 1.9883 38 1 4.4337 1.6570 1.5585 39 1 5.5076 1.8941 -0.6088 40 1 6.5461 2.3208 0.6178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260225209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:04 Heat of formation + Delta-G solvation = 9.249310 kcal Electronic energy + Delta-G solvation = -19254.011236 eV Core-core repulsion = 16646.846880 eV Total energy + Delta-G solvation = -2607.164356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10726 -37.16176 -36.63084 -33.80717 -32.52319 -30.65578 -28.73828 -28.18252 -27.92572 -25.84859 -23.43447 -23.29806 -21.11351 -20.03459 -18.30318 -17.31606 -16.39426 -16.20633 -16.01822 -15.40097 -15.23418 -14.93466 -14.80699 -14.42834 -13.95355 -13.70460 -13.66498 -13.22554 -12.86868 -12.83046 -12.72677 -12.55488 -12.40943 -12.38506 -12.04085 -11.82993 -11.65821 -11.48111 -11.32983 -10.95712 -10.35497 -10.12089 -9.44201 -9.14598 -8.98474 -7.89871 -5.88340 0.72410 0.81028 1.43075 1.48527 1.54787 2.57631 3.13147 3.46007 3.90929 4.08232 4.13011 4.29909 4.35007 4.39794 4.53213 4.66359 4.72890 4.76867 4.81825 4.90883 4.94240 5.00567 5.08577 5.11652 5.22556 5.26223 5.32646 5.40543 5.45796 5.53402 5.55801 5.79836 5.84325 5.89819 5.92570 6.11492 6.28216 6.42458 6.59117 6.78578 7.03680 7.19473 7.72660 9.17827 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.009495 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.688893 B = 2948.227284 C = 3282.273332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.020 4.020 3 C -0.155 4.155 4 C -0.161 4.161 5 C -0.094 4.094 6 C -0.128 4.128 7 C -0.143 4.143 8 C -0.134 4.134 9 C -0.137 4.137 10 C -0.057 4.057 11 C 0.040 3.960 12 H 0.105 0.895 13 C -0.504 4.504 14 H 0.027 0.973 15 C 0.055 3.945 16 N -0.888 5.888 17 Si 0.924 3.076 18 H -0.284 1.284 19 H -0.288 1.288 20 H -0.288 1.288 21 C 0.089 3.911 22 N -0.830 5.830 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.255 0.745 37 H 0.035 0.965 38 H -0.004 1.004 39 H 0.339 0.661 40 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 2.222 6.172 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.020 4.020 3 C -0.212 4.212 4 C -0.218 4.218 5 C -0.094 4.094 6 C -0.146 4.146 7 C -0.160 4.160 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.057 4.057 11 C 0.022 3.978 12 H 0.122 0.878 13 C -0.542 4.542 14 H 0.046 0.954 15 C -0.145 4.145 16 N -0.527 5.527 17 Si 0.753 3.247 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.043 4.043 22 N -0.359 5.359 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.014 0.986 39 H 0.152 0.848 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.809 1.566 5.927 10.732 hybrid contribution 0.809 0.034 -0.241 0.845 sum -8.000 1.600 5.686 9.944 Atomic orbital electron populations 1.21922 0.92992 1.01975 1.02230 1.19345 0.96103 0.94513 0.91996 1.22298 1.02700 0.94900 1.01318 1.22313 1.04723 0.98732 0.96022 1.19981 0.92740 0.99865 0.96834 1.21370 1.00059 0.98641 0.94533 1.21277 0.95432 1.00993 0.98328 1.21308 0.93872 1.00422 0.99596 1.21073 0.99197 0.99786 0.95492 1.20439 0.94453 0.96031 0.94809 1.18655 0.92080 0.92778 0.94302 0.87781 1.20976 1.25912 1.10492 0.96827 0.95427 1.25072 0.96847 0.96033 0.96591 1.69867 1.42146 1.36468 1.04189 0.86080 0.81358 0.79835 0.77435 1.20944 1.21496 1.21399 1.21845 0.93172 0.95420 0.93820 1.58325 1.32282 1.35142 1.10194 0.91524 0.91930 0.92215 0.91597 0.92461 0.92500 0.94365 0.93518 0.88983 0.84069 0.83892 0.84965 0.88153 0.93598 0.94692 0.98637 0.84758 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 7.08 71.98 0.51 -3.07 16 2 C -0.02 -0.68 0.75 -52.93 -0.04 -0.72 16 3 C -0.16 -5.32 8.05 71.98 0.58 -4.74 16 4 C -0.16 -6.47 8.07 71.98 0.58 -5.89 16 5 C -0.09 -3.53 4.76 -19.87 -0.09 -3.62 16 6 C -0.13 -4.06 8.98 22.27 0.20 -3.86 16 7 C -0.14 -4.23 10.05 22.27 0.22 -4.01 16 8 C -0.13 -4.44 10.05 22.27 0.22 -4.21 16 9 C -0.14 -5.55 8.64 22.27 0.19 -5.36 16 10 C -0.06 -2.42 4.51 -19.87 -0.09 -2.51 16 11 C 0.04 1.85 0.45 -12.28 -0.01 1.85 16 12 H 0.10 4.91 2.16 -2.39 -0.01 4.91 16 13 C -0.50 -26.92 7.29 25.60 0.19 -26.74 16 14 H 0.03 1.55 7.10 -2.91 -0.02 1.53 16 15 C 0.06 2.96 5.01 84.65 0.42 3.39 16 16 N -0.89 -47.08 11.97 21.45 0.26 -46.82 16 17 Si 0.92 44.49 29.54 68.60 2.03 46.52 16 18 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 21 C 0.09 3.86 5.31 86.30 0.46 4.32 16 22 N -0.83 -35.28 9.04 -186.71 -1.69 -36.97 16 23 H 0.07 1.56 7.59 -2.38 -0.02 1.54 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.51 7.43 -2.38 -0.02 1.49 16 26 H 0.07 2.58 3.13 -2.39 -0.01 2.57 16 27 H 0.06 1.84 7.99 -2.39 -0.02 1.82 16 28 H 0.06 1.72 8.12 -2.39 -0.02 1.70 16 29 H 0.04 1.45 8.07 -2.38 -0.02 1.43 16 30 H 0.05 1.80 7.96 -2.38 -0.02 1.78 16 31 H 0.09 4.42 3.59 -2.39 -0.01 4.41 16 32 H 0.14 3.62 5.90 -2.91 -0.02 3.61 16 33 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.10 4.24 7.50 -2.91 -0.02 4.22 16 36 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 37 H 0.03 1.57 7.80 -2.39 -0.02 1.55 16 38 H 0.00 -0.17 7.25 -2.38 -0.02 -0.19 16 39 H 0.34 14.77 8.89 -89.70 -0.80 13.97 16 40 H 0.33 11.67 9.08 -89.70 -0.81 10.85 16 Total: -1.00 -57.24 302.98 3.39 -53.85 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -0.56 Total: 38.59 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 3.35 Total: -55.17 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -1.43 Total: -83.79 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -57.24 3.39 -53.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.099 kcal (2) G-P(sol) polarization free energy of solvation -57.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds