Wall clock time and date at job start Mon Mar 30 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 C 1.52993 * 109.46757 * 240.00287 * 2 1 3 5 5 C 1.50694 * 109.47036 * 120.00050 * 2 1 3 6 6 C 1.38259 * 120.00465 * 1.75537 * 5 2 1 7 7 C 1.38211 * 120.00044 * 179.97438 * 6 5 2 8 8 C 1.38253 * 120.00365 * 359.97438 * 7 6 5 9 9 C 1.38214 * 119.99676 * 359.81163 * 8 7 6 10 10 C 1.38214 * 119.99805 * 181.77298 * 5 2 1 11 11 C 1.50699 * 119.99995 * 359.97438 * 10 5 2 12 12 H 1.08996 * 109.47176 * 355.55275 * 11 10 5 13 13 C 1.50706 * 109.46890 * 115.54676 * 11 10 5 14 14 H 1.07999 * 119.99691 * 359.97438 * 13 11 10 15 15 C 1.37872 * 119.99999 * 180.02562 * 13 11 10 16 16 N 1.31515 * 119.99970 * 179.97438 * 15 13 11 17 17 Si 1.86806 * 120.00223 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.46676 * 269.99820 * 17 15 13 19 19 H 1.48493 * 109.46948 * 29.99496 * 17 15 13 20 20 H 1.48495 * 109.47097 * 150.00020 * 17 15 13 21 21 C 1.52990 * 109.47479 * 235.54489 * 11 10 5 22 22 N 1.46903 * 109.47379 * 65.00395 * 21 11 10 23 23 H 1.09005 * 109.46906 * 299.99573 * 1 2 3 24 24 H 1.09003 * 109.47297 * 59.99673 * 1 2 3 25 25 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47332 * 184.84311 * 3 2 1 27 27 H 1.09002 * 109.47716 * 304.84525 * 3 2 1 28 28 H 1.09005 * 109.46946 * 64.84108 * 3 2 1 29 29 H 1.09007 * 109.47540 * 297.11741 * 4 2 1 30 30 H 1.09003 * 109.47823 * 57.12050 * 4 2 1 31 31 H 1.09005 * 109.47374 * 177.11553 * 4 2 1 32 32 H 1.08007 * 119.99426 * 359.97438 * 6 5 2 33 33 H 1.08004 * 119.99753 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.00360 * 180.02562 * 8 7 6 35 35 H 1.07995 * 119.99985 * 180.23135 * 9 8 7 36 36 H 0.96997 * 119.99930 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47575 * 185.00408 * 21 11 10 38 38 H 1.08999 * 109.47333 * 305.00409 * 21 11 10 39 39 H 1.00896 * 111.00251 * 180.02562 * 22 21 11 40 40 H 1.00907 * 110.99686 * 303.95397 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1345 -1.2675 2.1220 7 6 1.5953 -1.9195 3.2502 8 6 2.9541 -2.0151 3.4870 9 6 3.8518 -1.4620 2.5934 10 6 3.3907 -0.8047 1.4678 11 6 4.3694 -0.1976 0.4959 12 1 3.8292 0.1992 -0.3636 13 6 5.1239 0.9173 1.1733 14 1 4.9152 1.1620 2.2043 15 6 6.0798 1.6256 0.4765 16 7 6.7379 2.5989 1.0675 17 14 6.4392 1.2037 -1.3075 18 1 7.5121 0.1788 -1.3671 19 1 5.2097 0.6712 -1.9475 20 1 6.8817 2.4259 -2.0256 21 6 5.3553 -1.2698 0.0281 22 7 4.6353 -2.2971 -0.7363 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1265 1.4438 -0.0868 27 1 1.6076 1.9809 -0.8434 28 1 1.7492 1.9307 0.9302 29 1 1.7194 -1.7627 -1.2239 30 1 1.6351 -0.2380 -2.1385 31 1 3.1288 -0.6767 -1.2756 32 1 0.0730 -1.1932 1.9369 33 1 0.8939 -2.3551 3.9465 34 1 3.3141 -2.5249 4.3683 35 1 4.9132 -1.5399 2.7763 36 1 7.4106 3.0969 0.5774 37 1 6.1161 -0.8127 -0.6047 38 1 5.8313 -1.7287 0.8946 39 1 5.2651 -3.0175 -1.0563 40 1 3.8822 -2.6911 -0.1924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260225211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:07 Heat of formation + Delta-G solvation = 31.562088 kcal Electronic energy + Delta-G solvation = -19378.086875 eV Core-core repulsion = 16771.890074 eV Total energy + Delta-G solvation = -2606.196801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.86848 -35.85062 -35.40196 -32.38879 -30.98196 -29.37332 -27.99327 -27.00840 -26.45994 -23.55633 -22.43486 -22.10252 -19.54120 -18.76475 -16.77283 -15.91087 -15.55644 -14.85189 -14.56049 -13.96254 -13.74315 -13.61730 -13.45100 -13.03582 -13.01584 -12.59149 -12.16054 -11.83820 -11.49694 -11.47443 -11.39329 -11.11177 -10.91394 -10.74433 -10.43114 -10.32298 -10.17511 -9.93966 -9.64796 -9.38240 -9.01162 -8.56772 -8.13922 -7.94742 -7.75773 -6.11859 -4.11786 2.02583 2.09883 3.23974 3.37931 3.43433 4.36046 4.43847 5.12236 5.17106 5.33087 5.38442 5.53271 5.55429 5.60967 5.68540 5.86723 6.00950 6.05622 6.18401 6.20513 6.27051 6.32185 6.33360 6.37728 6.55638 6.58520 6.68255 6.72014 6.73351 6.85440 6.93558 7.10223 7.14439 7.22354 7.38449 7.58703 7.63800 7.73715 7.82372 8.01810 8.49074 8.94383 9.48111 11.00400 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.010220 C = 0.009150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.530093 B = 2739.088080 C = 3059.502888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.024 4.024 3 C -0.162 4.162 4 C -0.159 4.159 5 C -0.072 4.072 6 C -0.128 4.128 7 C -0.144 4.144 8 C -0.132 4.132 9 C -0.115 4.115 10 C -0.023 4.023 11 C 0.021 3.979 12 H 0.082 0.918 13 C -0.506 4.506 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.876 3.124 18 H -0.281 1.281 19 H -0.254 1.254 20 H -0.297 1.297 21 C 0.055 3.945 22 N -0.852 5.852 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.264 0.736 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.325 0.675 40 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -8.459 -1.438 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 C -0.219 4.219 4 C -0.216 4.216 5 C -0.072 4.072 6 C -0.146 4.146 7 C -0.162 4.162 8 C -0.150 4.150 9 C -0.133 4.133 10 C -0.023 4.023 11 C 0.003 3.997 12 H 0.099 0.901 13 C -0.544 4.544 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.706 3.294 18 H -0.209 1.209 19 H -0.178 1.178 20 H -0.225 1.225 21 C -0.075 4.075 22 N -0.380 5.380 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.122 0.878 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.136 0.864 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.148 -7.706 -1.959 12.121 hybrid contribution 0.693 -0.804 0.098 1.066 sum -8.455 -8.510 -1.860 12.140 Atomic orbital electron populations 1.21962 0.95591 1.00962 1.01176 1.19399 0.94157 0.95744 0.93058 1.22356 1.05439 0.93580 1.00514 1.22373 1.05336 0.98811 0.95053 1.19708 0.92970 0.98540 0.96003 1.21027 0.99061 0.99545 0.94945 1.20877 0.95341 1.01927 0.98062 1.21011 0.93491 1.01253 0.99257 1.21053 0.99556 0.98293 0.94392 1.19974 0.93341 0.93688 0.95279 1.19102 0.92293 0.92920 0.95415 0.90125 1.20906 1.19514 1.13894 1.00071 0.90601 1.25003 0.95559 0.94677 0.97741 1.69882 1.24777 1.21595 1.37021 0.87024 0.79711 0.76673 0.86015 1.20864 1.17795 1.22476 1.22459 0.97021 0.93170 0.94856 1.58991 1.15478 1.17811 1.45751 0.92857 0.93004 0.92971 0.87779 0.93836 0.93139 0.93460 0.93825 0.87782 0.86661 0.87413 0.87345 0.86395 0.92567 0.92205 0.95778 0.86427 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.13 37.16 0.27 -1.69 16 2 C -0.02 -0.40 0.75 -155.66 -0.12 -0.52 16 3 C -0.16 -3.07 8.07 37.16 0.30 -2.77 16 4 C -0.16 -2.68 7.94 37.15 0.30 -2.38 16 5 C -0.07 -1.31 4.76 -104.63 -0.50 -1.81 16 6 C -0.13 -2.08 8.98 -39.58 -0.36 -2.44 16 7 C -0.14 -2.25 10.05 -39.59 -0.40 -2.65 16 8 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 9 C -0.11 -2.20 8.84 -39.58 -0.35 -2.55 16 10 C -0.02 -0.45 3.55 -104.62 -0.37 -0.83 16 11 C 0.02 0.46 0.30 -92.93 -0.03 0.43 16 12 H 0.08 1.81 1.44 -51.93 -0.07 1.74 16 13 C -0.51 -13.41 7.95 -34.44 -0.27 -13.68 16 14 H 0.08 2.25 7.96 -52.49 -0.42 1.83 16 15 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 16 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 17 Si 0.88 21.21 24.41 -169.99 -4.15 17.06 16 18 H -0.28 -6.71 6.83 56.52 0.39 -6.33 16 19 H -0.25 -5.91 6.53 56.52 0.37 -5.54 16 20 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 21 C 0.05 1.13 5.55 -3.83 -0.02 1.11 16 22 N -0.85 -14.61 7.98 -10.37 -0.08 -14.70 16 23 H 0.05 0.72 7.60 -51.93 -0.39 0.33 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.67 7.43 -51.93 -0.39 0.28 16 26 H 0.10 2.29 3.89 -51.93 -0.20 2.09 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.99 3.29 -51.93 -0.17 1.82 16 32 H 0.12 1.62 5.90 -52.48 -0.31 1.31 16 33 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.32 7.26 -52.49 -0.38 1.94 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.06 1.35 3.22 -51.93 -0.17 1.18 16 38 H 0.02 0.50 6.96 -51.93 -0.36 0.13 16 39 H 0.32 4.79 9.08 -39.29 -0.36 4.43 16 40 H 0.33 5.50 8.06 -39.29 -0.32 5.19 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -28.35 293.38 -6.76 -35.11 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.68 Total: 14.32 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: -2.05 Total: -30.46 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.69 Total: -40.45 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.15 Total: 17.06 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.35 -6.76 -35.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.674 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds