Wall clock time and date at job start Mon Mar 30 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 C 1.52993 * 109.46757 * 240.00287 * 2 1 3 5 5 C 1.50694 * 109.47036 * 120.00050 * 2 1 3 6 6 C 1.38259 * 120.00465 * 1.75537 * 5 2 1 7 7 C 1.38211 * 120.00044 * 179.97438 * 6 5 2 8 8 C 1.38253 * 120.00365 * 359.97438 * 7 6 5 9 9 C 1.38214 * 119.99676 * 359.81163 * 8 7 6 10 10 C 1.38214 * 119.99805 * 181.77298 * 5 2 1 11 11 C 1.50699 * 119.99995 * 359.97438 * 10 5 2 12 12 H 1.08996 * 109.47176 * 355.55275 * 11 10 5 13 13 C 1.50706 * 109.46890 * 115.54676 * 11 10 5 14 14 H 1.07999 * 119.99691 * 359.97438 * 13 11 10 15 15 C 1.37872 * 119.99999 * 180.02562 * 13 11 10 16 16 N 1.31515 * 119.99970 * 179.97438 * 15 13 11 17 17 Si 1.86806 * 120.00223 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.46676 * 269.99820 * 17 15 13 19 19 H 1.48493 * 109.46948 * 29.99496 * 17 15 13 20 20 H 1.48495 * 109.47097 * 150.00020 * 17 15 13 21 21 C 1.52990 * 109.47479 * 235.54489 * 11 10 5 22 22 N 1.46903 * 109.47379 * 65.00395 * 21 11 10 23 23 H 1.09005 * 109.46906 * 299.99573 * 1 2 3 24 24 H 1.09003 * 109.47297 * 59.99673 * 1 2 3 25 25 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47332 * 184.84311 * 3 2 1 27 27 H 1.09002 * 109.47716 * 304.84525 * 3 2 1 28 28 H 1.09005 * 109.46946 * 64.84108 * 3 2 1 29 29 H 1.09007 * 109.47540 * 297.11741 * 4 2 1 30 30 H 1.09003 * 109.47823 * 57.12050 * 4 2 1 31 31 H 1.09005 * 109.47374 * 177.11553 * 4 2 1 32 32 H 1.08007 * 119.99426 * 359.97438 * 6 5 2 33 33 H 1.08004 * 119.99753 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.00360 * 180.02562 * 8 7 6 35 35 H 1.07995 * 119.99985 * 180.23135 * 9 8 7 36 36 H 0.96997 * 119.99930 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47575 * 185.00408 * 21 11 10 38 38 H 1.08999 * 109.47333 * 305.00409 * 21 11 10 39 39 H 1.00896 * 111.00251 * 180.02562 * 22 21 11 40 40 H 1.00907 * 110.99686 * 303.95397 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1345 -1.2675 2.1220 7 6 1.5953 -1.9195 3.2502 8 6 2.9541 -2.0151 3.4870 9 6 3.8518 -1.4620 2.5934 10 6 3.3907 -0.8047 1.4678 11 6 4.3694 -0.1976 0.4959 12 1 3.8292 0.1992 -0.3636 13 6 5.1239 0.9173 1.1733 14 1 4.9152 1.1620 2.2043 15 6 6.0798 1.6256 0.4765 16 7 6.7379 2.5989 1.0675 17 14 6.4392 1.2037 -1.3075 18 1 7.5121 0.1788 -1.3671 19 1 5.2097 0.6712 -1.9475 20 1 6.8817 2.4259 -2.0256 21 6 5.3553 -1.2698 0.0281 22 7 4.6353 -2.2971 -0.7363 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1265 1.4438 -0.0868 27 1 1.6076 1.9809 -0.8434 28 1 1.7492 1.9307 0.9302 29 1 1.7194 -1.7627 -1.2239 30 1 1.6351 -0.2380 -2.1385 31 1 3.1288 -0.6767 -1.2756 32 1 0.0730 -1.1932 1.9369 33 1 0.8939 -2.3551 3.9465 34 1 3.3141 -2.5249 4.3683 35 1 4.9132 -1.5399 2.7763 36 1 7.4106 3.0969 0.5774 37 1 6.1161 -0.8127 -0.6047 38 1 5.8313 -1.7287 0.8946 39 1 5.2651 -3.0175 -1.0563 40 1 3.8822 -2.6911 -0.1924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260225211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:07 Heat of formation + Delta-G solvation = 13.627917 kcal Electronic energy + Delta-G solvation = -19378.864559 eV Core-core repulsion = 16771.890074 eV Total energy + Delta-G solvation = -2606.974485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27334 -37.24173 -36.92375 -34.37397 -32.50868 -30.72385 -29.63445 -28.22246 -27.86868 -25.46072 -23.91609 -23.46570 -21.12025 -20.11949 -18.73917 -17.48444 -16.97123 -16.50509 -16.01032 -15.44758 -15.27299 -14.94363 -14.82376 -14.74511 -14.46581 -14.41971 -13.56606 -13.32008 -13.02258 -12.79614 -12.72477 -12.59783 -12.40005 -12.26320 -12.19263 -11.71860 -11.63891 -11.58492 -11.36884 -11.07293 -10.78673 -10.50823 -9.49911 -9.43530 -9.17992 -8.27746 -6.29449 0.67191 0.73005 1.28597 1.37449 1.49072 2.31565 3.02856 3.10569 3.85508 3.89436 4.05528 4.19812 4.28929 4.30407 4.38346 4.50814 4.63814 4.64555 4.76714 4.81675 4.91943 4.96383 5.04936 5.08962 5.14001 5.23359 5.25945 5.29516 5.37316 5.42395 5.49925 5.62677 5.68288 5.79141 5.81497 5.98732 6.14604 6.18778 6.34453 6.45306 6.68221 6.81302 7.33176 8.88703 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.010220 C = 0.009150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.530093 B = 2739.088080 C = 3059.502888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 C -0.161 4.161 4 C -0.156 4.156 5 C -0.082 4.082 6 C -0.126 4.126 7 C -0.135 4.135 8 C -0.133 4.133 9 C -0.137 4.137 10 C -0.048 4.048 11 C 0.028 3.972 12 H 0.086 0.914 13 C -0.494 4.494 14 H 0.028 0.972 15 C 0.018 3.982 16 N -0.947 5.947 17 Si 0.937 3.063 18 H -0.274 1.274 19 H -0.238 1.238 20 H -0.302 1.302 21 C 0.061 3.939 22 N -0.840 5.840 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.264 0.736 37 H 0.044 0.956 38 H 0.016 0.984 39 H 0.342 0.658 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 -10.588 -2.337 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 C -0.218 4.218 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.144 4.144 7 C -0.153 4.153 8 C -0.151 4.151 9 C -0.155 4.155 10 C -0.048 4.048 11 C 0.009 3.991 12 H 0.103 0.897 13 C -0.532 4.532 14 H 0.046 0.954 15 C -0.179 4.179 16 N -0.588 5.588 17 Si 0.764 3.236 18 H -0.201 1.201 19 H -0.161 1.161 20 H -0.230 1.230 21 C -0.069 4.069 22 N -0.371 5.371 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.155 0.845 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.927 -9.871 -2.862 15.744 hybrid contribution 1.481 -0.164 0.513 1.576 sum -10.445 -10.036 -2.350 14.674 Atomic orbital electron populations 1.21912 0.92758 1.02414 1.02066 1.19431 0.96382 0.93860 0.92724 1.22298 1.03163 0.95730 1.00637 1.22295 1.03673 0.99822 0.95462 1.19912 0.92356 0.98850 0.97093 1.21391 1.00221 0.98398 0.94344 1.21311 0.95299 1.00555 0.98157 1.21281 0.93898 1.00667 0.99274 1.21049 0.99214 0.99810 0.95440 1.19863 0.94066 0.95318 0.95592 1.18928 0.92499 0.91871 0.95769 0.89727 1.21098 1.19178 1.14927 0.98039 0.95369 1.25743 0.95657 0.94632 1.01870 1.70034 1.26293 1.23552 1.38900 0.86038 0.80184 0.76223 0.81128 1.20112 1.16086 1.23004 1.22159 0.96401 0.93808 0.94560 1.58843 1.15562 1.17835 1.44828 0.92497 0.91740 0.91152 0.91388 0.92029 0.94349 0.92078 0.92580 0.90273 0.83733 0.83748 0.85049 0.88450 0.92700 0.93844 0.96591 0.84545 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 7.13 71.98 0.51 -2.71 16 2 C -0.02 -0.76 0.75 -52.93 -0.04 -0.80 16 3 C -0.16 -6.01 8.07 71.98 0.58 -5.42 16 4 C -0.16 -4.82 7.94 71.98 0.57 -4.25 16 5 C -0.08 -2.83 4.76 -19.87 -0.09 -2.92 16 6 C -0.13 -3.64 8.98 22.27 0.20 -3.44 16 7 C -0.14 -3.72 10.05 22.27 0.22 -3.50 16 8 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 9 C -0.14 -5.28 8.84 22.27 0.20 -5.08 16 10 C -0.05 -1.93 3.55 -19.87 -0.07 -2.00 16 11 C 0.03 1.23 0.30 -12.29 0.00 1.23 16 12 H 0.09 3.80 1.44 -2.39 0.00 3.80 16 13 C -0.49 -27.54 7.95 25.60 0.20 -27.34 16 14 H 0.03 1.79 7.96 -2.91 -0.02 1.77 16 15 C 0.02 1.04 5.45 84.65 0.46 1.50 16 16 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 17 Si 0.94 45.01 24.41 68.60 1.67 46.69 16 18 H -0.27 -12.75 6.83 99.48 0.68 -12.08 16 19 H -0.24 -10.67 6.53 99.48 0.65 -10.02 16 20 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 21 C 0.06 2.54 5.55 86.30 0.48 3.02 16 22 N -0.84 -27.47 7.98 -186.72 -1.49 -28.96 16 23 H 0.06 1.32 7.60 -2.38 -0.02 1.30 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.45 7.43 -2.39 -0.02 1.43 16 26 H 0.07 3.04 3.89 -2.39 -0.01 3.03 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 2.88 3.29 -2.38 -0.01 2.87 16 32 H 0.15 3.32 5.90 -2.91 -0.02 3.30 16 33 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.10 4.03 7.26 -2.91 -0.02 4.01 16 36 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.04 1.94 3.22 -2.39 -0.01 1.93 16 38 H 0.02 0.67 6.96 -2.39 -0.02 0.66 16 39 H 0.34 9.36 9.08 -89.70 -0.81 8.55 16 40 H 0.34 10.60 8.06 -89.69 -0.72 9.88 16 Total: -1.00 -64.44 293.38 3.37 -61.07 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.56 Total: 35.59 kcal Atomic # 6 Polarization: -59.10 SS G_CDS: 3.45 Total: -55.66 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.19 Total: -87.69 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.67 Total: 46.69 kcal Total: -64.44 3.37 -61.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.693 kcal (2) G-P(sol) polarization free energy of solvation -64.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds