Wall clock time and date at job start Mon Mar 30 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.46941 * 2 1 4 4 C 1.38253 * 120.00531 * 265.00417 * 3 2 1 5 5 C 1.38215 * 120.00298 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.99853 * 359.95758 * 5 4 3 7 7 C 1.50706 * 120.00023 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47238 * 59.99399 * 7 6 5 9 9 C 1.52999 * 109.46573 * 299.99425 * 7 6 5 10 10 C 1.38217 * 120.00041 * 0.27340 * 6 5 4 11 11 C 1.38223 * 119.99802 * 85.02619 * 3 2 1 12 12 C 1.50707 * 119.99633 * 359.97438 * 11 3 2 13 13 H 1.08993 * 109.46641 * 40.00318 * 12 11 3 14 14 N 1.46901 * 109.46760 * 160.00185 * 12 11 3 15 15 C 1.50699 * 109.47211 * 279.99896 * 12 11 3 16 16 H 1.07998 * 119.99972 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99955 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99928 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99982 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47405 * 89.99945 * 19 17 15 21 21 H 1.48494 * 109.47126 * 209.99959 * 19 17 15 22 22 H 1.48500 * 109.47096 * 329.99996 * 19 17 15 23 23 H 1.09002 * 109.47201 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47655 * 299.99366 * 1 2 3 25 25 H 1.09006 * 109.47492 * 59.99573 * 1 2 3 26 26 H 1.09002 * 109.46750 * 240.00536 * 2 1 3 27 27 H 1.08996 * 109.47442 * 120.00607 * 2 1 3 28 28 H 1.07999 * 119.99936 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.00314 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.46822 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.46832 * 60.00314 * 8 7 6 33 33 H 1.09004 * 109.47261 * 300.00295 * 8 7 6 34 34 H 1.09002 * 109.46716 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.47486 * 299.99934 * 9 7 6 36 36 H 1.09001 * 109.47362 * 60.00657 * 9 7 6 37 37 H 1.08000 * 119.99975 * 179.72981 * 10 6 5 38 38 H 1.00899 * 110.99827 * 59.99494 * 14 12 11 39 39 H 1.00889 * 110.99991 * 183.95635 * 14 12 11 40 40 H 0.96998 * 119.99771 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3610 2.0379 -1.1927 5 6 2.8222 3.3408 -1.1926 6 6 2.9539 4.0274 0.0002 7 6 3.4562 5.4483 0.0003 8 6 2.5124 6.3229 -0.8274 9 6 4.8589 5.4932 -0.6089 10 6 2.6298 3.4089 1.1930 11 6 2.1647 2.1069 1.1926 12 6 1.8063 1.4343 2.4927 13 1 2.1451 0.3986 2.4713 14 7 2.4574 2.1397 3.6047 15 6 0.3116 1.4702 2.6815 16 1 -0.3160 1.9334 1.9346 17 6 -0.2545 0.9118 3.8078 18 7 0.5098 0.3473 4.7171 19 14 -2.1073 0.9557 4.0415 20 1 -2.7113 -0.2595 3.4384 21 1 -2.4224 0.9972 5.4921 22 1 -2.6612 2.1643 3.3799 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.2582 1.5016 -2.1244 29 1 3.0793 3.8228 -2.1243 30 1 3.4930 5.8205 1.0241 31 1 2.8760 7.3505 -0.8277 32 1 1.5131 6.2908 -0.3934 33 1 2.4760 5.9504 -1.8512 34 1 5.2225 6.5208 -0.6084 35 1 5.5313 4.8701 -0.0192 36 1 4.8226 5.1208 -1.6327 37 1 2.7368 3.9437 2.1251 38 1 2.1596 3.1028 3.6457 39 1 2.2853 1.6702 4.4809 40 1 0.1115 -0.0452 5.5096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:46 Heat of formation + Delta-G solvation = -5.571341 kcal Electronic energy + Delta-G solvation = -18473.450952 eV Core-core repulsion = 15865.643924 eV Total energy + Delta-G solvation = -2607.807028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27247 -36.07236 -34.22366 -32.46294 -31.54439 -29.15807 -27.98463 -26.96468 -26.08213 -23.42399 -22.96329 -21.01573 -20.46724 -18.45352 -16.56454 -15.99708 -15.13768 -14.74518 -14.32241 -14.00629 -13.56593 -13.35916 -13.15938 -12.90759 -12.61824 -12.52338 -12.13509 -11.99615 -11.77136 -11.27786 -11.21955 -11.14608 -11.04997 -10.80528 -10.66850 -10.61454 -10.46168 -10.07547 -9.97071 -9.73208 -9.26992 -8.65465 -7.91823 -7.63966 -7.17950 -6.09927 -4.24095 2.12957 2.26512 3.20433 3.28387 3.31904 4.28646 4.56781 5.04337 5.11091 5.11610 5.44351 5.54898 5.67168 5.71371 5.75311 5.80341 5.90221 5.96666 6.07348 6.10554 6.18212 6.26245 6.34850 6.36417 6.43097 6.51069 6.63315 6.67093 6.75713 6.90924 7.02682 7.20783 7.27867 7.38266 7.41633 7.72602 7.79253 7.90405 8.11037 8.67572 8.93424 9.11740 9.44601 10.87078 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.007100 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.478931 B = 3942.951170 C = 4337.527261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.072 4.072 3 C -0.086 4.086 4 C -0.125 4.125 5 C -0.139 4.139 6 C -0.092 4.092 7 C -0.053 4.053 8 C -0.141 4.141 9 C -0.140 4.140 10 C -0.107 4.107 11 C -0.027 4.027 12 C 0.240 3.760 13 H 0.051 0.949 14 N -0.852 5.852 15 C -0.533 4.533 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.040 0.960 24 H 0.103 0.897 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.119 0.881 38 H 0.311 0.689 39 H 0.355 0.645 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 6.076 -8.891 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.109 4.109 3 C -0.087 4.087 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.092 4.092 7 C -0.072 4.072 8 C -0.198 4.198 9 C -0.198 4.198 10 C -0.125 4.125 11 C -0.027 4.027 12 C 0.131 3.869 13 H 0.069 0.931 14 N -0.382 5.382 15 C -0.572 4.572 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.059 0.941 24 H 0.121 0.879 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.171 0.829 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.470 5.794 -9.084 11.665 hybrid contribution -2.102 0.033 0.464 2.153 sum 2.368 5.827 -8.619 10.670 Atomic orbital electron populations 1.22117 0.94982 1.01014 1.03979 1.20353 0.96601 0.92748 1.01219 1.19707 0.99838 0.96550 0.92575 1.20821 1.01380 0.95118 0.96968 1.20603 1.03488 0.94861 0.96795 1.19688 1.00935 0.95037 0.93543 1.20042 0.94682 0.92418 1.00029 1.21832 0.99517 0.98517 0.99950 1.21829 0.96169 1.00924 1.00848 1.20872 0.99819 0.95147 0.96681 1.20319 0.92963 0.93438 0.96015 1.17996 0.91570 0.93267 0.84109 0.93107 1.59560 1.63358 1.05360 1.09962 1.21731 0.92576 1.37673 1.05243 0.92155 1.24991 0.98119 0.94539 0.95909 1.69739 1.35055 1.38049 1.10271 0.86623 0.85622 0.78663 0.77370 1.20399 1.21168 1.19849 0.94058 0.87897 0.94575 0.93359 0.90651 0.87484 0.87650 0.90834 0.93066 0.92596 0.92789 0.93078 0.92579 0.92797 0.86267 0.87950 0.82929 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.81 37.16 0.36 -2.79 16 2 C -0.07 -1.37 5.53 -27.89 -0.15 -1.53 16 3 C -0.09 -1.73 5.13 -104.62 -0.54 -2.26 16 4 C -0.12 -2.21 9.68 -39.58 -0.38 -2.59 16 5 C -0.14 -2.32 8.71 -39.58 -0.34 -2.66 16 6 C -0.09 -1.58 4.78 -104.62 -0.50 -2.08 16 7 C -0.05 -0.74 3.09 -91.77 -0.28 -1.02 16 8 C -0.14 -1.74 9.01 37.16 0.33 -1.40 16 9 C -0.14 -1.70 9.01 37.16 0.33 -1.37 16 10 C -0.11 -2.13 8.88 -39.58 -0.35 -2.48 16 11 C -0.03 -0.58 5.03 -104.62 -0.53 -1.11 16 12 C 0.24 5.82 2.42 -70.01 -0.17 5.65 16 13 H 0.05 1.36 6.46 -51.93 -0.34 1.03 16 14 N -0.85 -20.03 8.66 -6.65 -0.06 -20.09 16 15 C -0.53 -13.61 6.27 -34.44 -0.22 -13.83 16 16 H 0.06 1.58 6.62 -52.49 -0.35 1.24 16 17 C 0.07 1.74 5.38 -17.82 -0.10 1.64 16 18 N -0.89 -23.92 11.54 55.43 0.64 -23.28 16 19 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.10 2.28 4.11 -51.93 -0.21 2.07 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 27 H 0.08 1.56 6.33 -51.93 -0.33 1.23 16 28 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.11 1.50 7.10 -52.49 -0.37 1.13 16 30 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.64 7.39 -51.93 -0.38 0.26 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.63 7.39 -51.93 -0.38 0.24 16 37 H 0.12 2.34 6.13 -52.49 -0.32 2.02 16 38 H 0.31 6.97 7.29 -39.29 -0.29 6.69 16 39 H 0.35 8.90 7.08 -39.30 -0.28 8.63 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -26.10 310.82 -8.46 -34.55 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -6.17 Total: 16.51 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -2.53 Total: -27.83 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.58 Total: -43.38 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.10 -8.46 -34.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.983 kcal (2) G-P(sol) polarization free energy of solvation -26.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds