Wall clock time and date at job start Mon Mar 30 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.46941 * 2 1 4 4 C 1.38253 * 120.00531 * 265.00417 * 3 2 1 5 5 C 1.38215 * 120.00298 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.99853 * 359.95758 * 5 4 3 7 7 C 1.50706 * 120.00023 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47238 * 59.99399 * 7 6 5 9 9 C 1.52999 * 109.46573 * 299.99425 * 7 6 5 10 10 C 1.38217 * 120.00041 * 0.27340 * 6 5 4 11 11 C 1.38223 * 119.99802 * 85.02619 * 3 2 1 12 12 C 1.50707 * 119.99633 * 359.97438 * 11 3 2 13 13 H 1.08993 * 109.46641 * 40.00318 * 12 11 3 14 14 N 1.46901 * 109.46760 * 160.00185 * 12 11 3 15 15 C 1.50699 * 109.47211 * 279.99896 * 12 11 3 16 16 H 1.07998 * 119.99972 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99955 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99928 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99982 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47405 * 89.99945 * 19 17 15 21 21 H 1.48494 * 109.47126 * 209.99959 * 19 17 15 22 22 H 1.48500 * 109.47096 * 329.99996 * 19 17 15 23 23 H 1.09002 * 109.47201 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47655 * 299.99366 * 1 2 3 25 25 H 1.09006 * 109.47492 * 59.99573 * 1 2 3 26 26 H 1.09002 * 109.46750 * 240.00536 * 2 1 3 27 27 H 1.08996 * 109.47442 * 120.00607 * 2 1 3 28 28 H 1.07999 * 119.99936 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.00314 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.46822 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.46832 * 60.00314 * 8 7 6 33 33 H 1.09004 * 109.47261 * 300.00295 * 8 7 6 34 34 H 1.09002 * 109.46716 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.47486 * 299.99934 * 9 7 6 36 36 H 1.09001 * 109.47362 * 60.00657 * 9 7 6 37 37 H 1.08000 * 119.99975 * 179.72981 * 10 6 5 38 38 H 1.00899 * 110.99827 * 59.99494 * 14 12 11 39 39 H 1.00889 * 110.99991 * 183.95635 * 14 12 11 40 40 H 0.96998 * 119.99771 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3610 2.0379 -1.1927 5 6 2.8222 3.3408 -1.1926 6 6 2.9539 4.0274 0.0002 7 6 3.4562 5.4483 0.0003 8 6 2.5124 6.3229 -0.8274 9 6 4.8589 5.4932 -0.6089 10 6 2.6298 3.4089 1.1930 11 6 2.1647 2.1069 1.1926 12 6 1.8063 1.4343 2.4927 13 1 2.1451 0.3986 2.4713 14 7 2.4574 2.1397 3.6047 15 6 0.3116 1.4702 2.6815 16 1 -0.3160 1.9334 1.9346 17 6 -0.2545 0.9118 3.8078 18 7 0.5098 0.3473 4.7171 19 14 -2.1073 0.9557 4.0415 20 1 -2.7113 -0.2595 3.4384 21 1 -2.4224 0.9972 5.4921 22 1 -2.6612 2.1643 3.3799 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.2582 1.5016 -2.1244 29 1 3.0793 3.8228 -2.1243 30 1 3.4930 5.8205 1.0241 31 1 2.8760 7.3505 -0.8277 32 1 1.5131 6.2908 -0.3934 33 1 2.4760 5.9504 -1.8512 34 1 5.2225 6.5208 -0.6084 35 1 5.5313 4.8701 -0.0192 36 1 4.8226 5.1208 -1.6327 37 1 2.7368 3.9437 2.1251 38 1 2.1596 3.1028 3.6457 39 1 2.2853 1.6702 4.4809 40 1 0.1115 -0.0452 5.5096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:45 Heat of formation + Delta-G solvation = -18.909336 kcal Electronic energy + Delta-G solvation = -18474.029330 eV Core-core repulsion = 15865.643924 eV Total energy + Delta-G solvation = -2608.385406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72483 -37.48056 -35.91622 -33.91330 -33.36370 -30.75071 -29.43492 -28.02649 -27.90004 -24.94094 -24.56635 -22.33620 -22.03525 -19.91228 -18.56058 -17.44540 -16.66370 -16.52487 -15.74295 -15.56113 -14.92899 -14.88199 -14.59685 -14.29529 -14.07463 -13.93672 -13.66113 -13.30350 -13.13017 -12.98869 -12.94554 -12.77016 -12.39212 -12.38695 -12.10297 -11.92805 -11.78749 -11.72799 -11.48657 -11.26724 -10.95276 -10.62560 -9.41980 -9.24418 -9.01203 -8.08027 -6.28940 0.68985 0.79084 1.35360 1.38664 1.46692 2.37032 3.08215 3.09733 3.89035 4.02005 4.16215 4.25905 4.34352 4.41991 4.43094 4.56032 4.67448 4.74569 4.86019 4.87986 4.88278 4.91095 5.05118 5.06365 5.12696 5.15718 5.28538 5.35068 5.43189 5.47638 5.49026 5.58053 5.65305 5.75432 5.82135 5.95433 6.07720 6.22594 6.41595 6.69648 6.97211 7.12591 7.42289 8.86246 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.007100 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.478931 B = 3942.951170 C = 4337.527261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.069 4.069 3 C -0.105 4.105 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.055 4.055 8 C -0.137 4.137 9 C -0.136 4.136 10 C -0.126 4.126 11 C -0.058 4.058 12 C 0.247 3.753 13 H 0.015 0.985 14 N -0.846 5.846 15 C -0.530 4.530 16 H 0.050 0.950 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.945 3.055 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.316 0.684 39 H 0.344 0.656 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.853 7.457 -11.375 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.106 4.106 3 C -0.105 4.105 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.088 4.088 7 C -0.074 4.074 8 C -0.194 4.194 9 C -0.193 4.193 10 C -0.144 4.144 11 C -0.058 4.058 12 C 0.137 3.863 13 H 0.033 0.967 14 N -0.375 5.375 15 C -0.569 4.569 16 H 0.068 0.932 17 C -0.175 4.175 18 N -0.558 5.558 19 Si 0.772 3.228 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.198 1.198 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.158 0.842 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.542 7.185 -11.578 14.364 hybrid contribution -2.066 -0.358 1.179 2.406 sum 2.476 6.827 -10.399 12.684 Atomic orbital electron populations 1.22013 0.95125 1.01454 1.03046 1.20314 0.96459 0.92661 1.01167 1.19874 1.00726 0.96951 0.92991 1.21150 1.00178 0.95701 0.97024 1.21002 1.01743 0.94412 0.97816 1.20045 0.99393 0.96614 0.92700 1.20121 0.96197 0.90502 1.00534 1.21804 0.98303 0.99499 0.99798 1.21798 0.94455 1.02238 1.00836 1.20924 1.00937 0.94755 0.97790 1.20208 0.95581 0.94618 0.95435 1.17769 0.90869 0.91859 0.85796 0.96731 1.59537 1.63212 1.05474 1.09299 1.21823 0.93331 1.36989 1.04790 0.93151 1.25618 1.01618 0.94483 0.95824 1.69839 1.36374 1.38911 1.10639 0.85747 0.81413 0.78518 0.77158 1.20068 1.20937 1.19808 0.92938 0.91178 0.92892 0.90439 0.93543 0.84555 0.84226 0.91425 0.90821 0.93989 0.91855 0.90870 0.93758 0.91846 0.87116 0.87383 0.84153 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.06 9.81 71.98 0.71 -5.36 16 2 C -0.07 -2.62 5.53 29.85 0.17 -2.45 16 3 C -0.10 -4.16 5.13 -19.87 -0.10 -4.26 16 4 C -0.12 -4.01 9.68 22.27 0.22 -3.79 16 5 C -0.13 -3.95 8.71 22.27 0.19 -3.76 16 6 C -0.09 -2.85 4.78 -19.86 -0.09 -2.94 16 7 C -0.06 -1.39 3.09 -11.54 -0.04 -1.43 16 8 C -0.14 -2.92 9.01 71.98 0.65 -2.28 16 9 C -0.14 -2.85 9.01 71.98 0.65 -2.20 16 10 C -0.13 -5.04 8.88 22.27 0.20 -4.84 16 11 C -0.06 -2.57 5.03 -19.86 -0.10 -2.67 16 12 C 0.25 12.51 2.42 43.42 0.11 12.62 16 13 H 0.01 0.85 6.46 -2.39 -0.02 0.84 16 14 N -0.85 -41.55 8.66 -174.95 -1.52 -43.07 16 15 C -0.53 -27.99 6.27 25.60 0.16 -27.83 16 16 H 0.05 2.72 6.62 -2.91 -0.02 2.71 16 17 C 0.02 1.29 5.38 84.65 0.46 1.75 16 18 N -0.92 -50.75 11.54 21.45 0.25 -50.51 16 19 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 24 H 0.07 3.16 4.11 -2.39 -0.01 3.15 16 25 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.08 2.44 8.05 -2.39 -0.02 2.42 16 27 H 0.05 2.01 6.33 -2.39 -0.02 2.00 16 28 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.14 3.25 7.10 -2.91 -0.02 3.23 16 30 H 0.07 1.78 7.88 -2.39 -0.02 1.76 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.23 7.39 -2.38 -0.02 1.22 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.21 7.39 -2.39 -0.02 1.19 16 37 H 0.11 4.48 6.13 -2.91 -0.02 4.46 16 38 H 0.32 14.77 7.29 -89.70 -0.65 14.11 16 39 H 0.34 18.07 7.08 -89.70 -0.63 17.43 16 40 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -57.50 310.82 3.67 -53.83 By element: Atomic # 1 Polarization: 44.67 SS G_CDS: -0.25 Total: 44.42 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 3.16 Total: -49.45 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -1.27 Total: -93.57 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -57.50 3.67 -53.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.922 kcal (2) G-P(sol) polarization free energy of solvation -57.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds