Wall clock time and date at job start Mon Mar 30 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46733 * 2 1 4 4 C 1.38255 * 120.00175 * 264.97225 * 3 2 1 5 5 C 1.38215 * 119.99774 * 179.78959 * 4 3 2 6 6 C 1.38254 * 120.00539 * 0.46931 * 5 4 3 7 7 C 1.50699 * 120.00260 * 179.78517 * 6 5 4 8 8 C 1.52997 * 109.47078 * 59.72746 * 7 6 5 9 9 C 1.52992 * 109.46956 * 299.72434 * 7 6 5 10 10 C 1.38219 * 119.99673 * 359.51175 * 6 5 4 11 11 C 1.38218 * 119.99883 * 85.00143 * 3 2 1 12 12 C 1.50696 * 120.00207 * 359.97185 * 11 3 2 13 13 H 1.09002 * 109.47491 * 325.02780 * 12 11 3 14 14 N 1.46898 * 109.47356 * 205.02373 * 12 11 3 15 15 C 1.50700 * 109.47125 * 85.02203 * 12 11 3 16 16 H 1.08006 * 119.99854 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00280 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00072 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 119.99712 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47218 * 89.99818 * 19 17 15 21 21 H 1.48506 * 109.46997 * 209.99496 * 19 17 15 22 22 H 1.48500 * 109.47517 * 329.99409 * 19 17 15 23 23 H 1.08993 * 109.47489 * 300.00160 * 1 2 3 24 24 H 1.09003 * 109.46729 * 60.00429 * 1 2 3 25 25 H 1.09001 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47300 * 239.99928 * 2 1 3 27 27 H 1.09003 * 109.46729 * 119.99571 * 2 1 3 28 28 H 1.08001 * 120.00034 * 0.02562 * 4 3 2 29 29 H 1.08009 * 119.99667 * 180.25406 * 5 4 3 30 30 H 1.09002 * 109.46959 * 179.72658 * 7 6 5 31 31 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 32 32 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 34 34 H 1.09001 * 109.47066 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47747 * 299.99900 * 9 7 6 36 36 H 1.09002 * 109.47103 * 60.00312 * 9 7 6 37 37 H 1.07991 * 120.00105 * 180.25344 * 10 6 5 38 38 H 1.00892 * 111.00060 * 300.00167 * 14 12 11 39 39 H 1.00906 * 111.00041 * 63.95571 * 14 12 11 40 40 H 0.97006 * 120.00018 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0377 -1.1927 5 6 2.8181 3.3422 -1.1930 6 6 2.9547 4.0272 0.0002 7 6 3.4570 5.4480 0.0002 8 6 2.5135 6.3225 -0.8281 9 6 4.8600 5.4929 -0.6084 10 6 2.6251 3.4107 1.1925 11 6 2.1643 2.1072 1.1925 12 6 1.8053 1.4349 2.4925 13 1 0.9570 0.7688 2.3351 14 7 1.4495 2.4539 3.4889 15 6 2.9844 0.6378 2.9882 16 1 3.9020 0.6203 2.4188 17 6 2.8920 -0.0681 4.1689 18 7 3.9212 -0.7632 4.6017 19 14 1.3052 -0.0371 5.1539 20 1 0.4252 -1.1478 4.7100 21 1 1.6153 -0.1979 6.5973 22 1 0.6135 1.2591 4.9377 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.2586 1.5014 -2.1245 29 1 3.0715 3.8255 -2.1251 30 1 3.4929 5.8207 1.0239 31 1 2.4776 5.9499 -1.8518 32 1 2.8767 7.3503 -0.8277 33 1 1.5140 6.2905 -0.3945 34 1 5.2235 6.5205 -0.6080 35 1 5.5321 4.8699 -0.0183 36 1 4.8241 5.1202 -1.6321 37 1 2.7278 3.9471 2.1242 38 1 2.2202 3.0842 3.6526 39 1 0.6221 2.9594 3.2096 40 1 3.8561 -1.2602 5.4322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:48 Heat of formation + Delta-G solvation = -13.880499 kcal Electronic energy + Delta-G solvation = -18432.719662 eV Core-core repulsion = 15824.552323 eV Total energy + Delta-G solvation = -2608.167340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86968 -37.54853 -35.94014 -34.07897 -33.75967 -30.89681 -29.62178 -28.21714 -27.94922 -25.12934 -24.31323 -22.44642 -21.97991 -19.96455 -18.91375 -17.29395 -16.89520 -16.55866 -15.88777 -15.75505 -15.12159 -14.88247 -14.60921 -14.42399 -14.27142 -14.19563 -13.94346 -13.40704 -13.29867 -13.02986 -12.82675 -12.69803 -12.51677 -12.23399 -12.10018 -11.96915 -11.82645 -11.69922 -11.44582 -11.29603 -11.18734 -10.70078 -9.52396 -9.12395 -8.90399 -8.22245 -6.33831 0.59334 0.66126 1.49832 1.56969 1.93764 2.61370 2.95750 3.16323 3.80273 3.93672 4.07305 4.16379 4.20719 4.27576 4.36508 4.41304 4.55172 4.56663 4.68496 4.75602 4.81528 4.83811 4.93563 5.01047 5.04865 5.07926 5.15311 5.22187 5.29126 5.35618 5.40456 5.42851 5.49591 5.57685 5.74145 5.84752 5.98002 6.15376 6.29994 6.54736 6.79822 7.03986 7.43177 8.91343 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.007452 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.174597 B = 3756.508108 C = 4284.138486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.097 4.097 4 C -0.123 4.123 5 C -0.129 4.129 6 C -0.084 4.084 7 C -0.055 4.055 8 C -0.135 4.135 9 C -0.140 4.140 10 C -0.137 4.137 11 C -0.092 4.092 12 C 0.228 3.772 13 H 0.047 0.953 14 N -0.838 5.838 15 C -0.503 4.503 16 H 0.017 0.983 17 C 0.026 3.974 18 N -0.953 5.953 19 Si 0.924 3.076 20 H -0.300 1.300 21 H -0.316 1.316 22 H -0.156 1.156 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.333 0.667 39 H 0.329 0.671 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 12.360 -12.843 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.098 4.098 4 C -0.141 4.141 5 C -0.147 4.147 6 C -0.084 4.084 7 C -0.074 4.074 8 C -0.192 4.192 9 C -0.197 4.197 10 C -0.155 4.155 11 C -0.094 4.094 12 C 0.118 3.882 13 H 0.065 0.935 14 N -0.369 5.369 15 C -0.542 4.542 16 H 0.036 0.964 17 C -0.172 4.172 18 N -0.593 5.593 19 Si 0.750 3.250 20 H -0.227 1.227 21 H -0.245 1.245 22 H -0.077 1.077 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.199 11.683 -12.213 18.002 hybrid contribution 0.341 -0.197 0.225 0.454 sum -5.858 11.486 -11.988 17.605 Atomic orbital electron populations 1.21671 0.93799 1.02071 1.01736 1.20542 0.97023 0.92867 1.02323 1.19903 1.00418 0.96448 0.93004 1.21222 0.99917 0.95603 0.97319 1.21045 1.01263 0.94436 0.97964 1.20027 0.98929 0.96754 0.92718 1.20132 0.95961 0.90534 1.00734 1.21792 0.98414 0.99318 0.99702 1.21822 0.94847 1.02230 1.00799 1.20957 1.01623 0.94879 0.98065 1.20921 0.97486 0.94344 0.96607 1.18254 0.94875 0.90277 0.84752 0.93496 1.59740 1.08995 1.19622 1.48534 1.20847 0.98226 1.28378 1.06707 0.96422 1.25873 1.00057 0.93100 0.98175 1.70113 1.33475 1.32887 1.22821 0.86381 0.81063 0.82677 0.74901 1.22736 1.24484 1.07666 0.93786 0.91455 0.91625 0.90595 0.92734 0.84587 0.84272 0.91145 0.91968 0.90946 0.93234 0.90715 0.94361 0.91919 0.86806 0.85239 0.85838 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.72 71.98 0.70 -3.31 16 2 C -0.09 -3.20 5.38 29.85 0.16 -3.04 16 3 C -0.10 -3.58 5.13 -19.87 -0.10 -3.68 16 4 C -0.12 -3.77 9.68 22.27 0.22 -3.56 16 5 C -0.13 -3.63 8.71 22.27 0.19 -3.43 16 6 C -0.08 -2.52 4.78 -19.87 -0.09 -2.61 16 7 C -0.06 -1.28 3.09 -11.54 -0.04 -1.31 16 8 C -0.14 -2.47 9.00 71.98 0.65 -1.82 16 9 C -0.14 -2.93 9.01 71.98 0.65 -2.29 16 10 C -0.14 -4.91 8.89 22.27 0.20 -4.71 16 11 C -0.09 -3.69 4.98 -19.86 -0.10 -3.79 16 12 C 0.23 10.30 1.68 43.42 0.07 10.37 16 13 H 0.05 2.16 5.05 -2.39 -0.01 2.15 16 14 N -0.84 -33.30 5.43 -174.96 -0.95 -34.25 16 15 C -0.50 -28.78 8.50 25.60 0.22 -28.56 16 16 H 0.02 1.15 7.98 -2.91 -0.02 1.13 16 17 C 0.03 1.54 5.47 84.66 0.46 2.01 16 18 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 19 Si 0.92 45.22 26.94 68.60 1.85 47.07 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.32 -16.02 7.11 99.48 0.71 -15.32 16 22 H -0.16 -6.73 5.17 99.48 0.51 -6.22 16 23 H 0.04 1.40 6.80 -2.39 -0.02 1.38 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.35 8.05 -2.39 -0.02 2.33 16 27 H 0.05 2.38 6.42 -2.39 -0.02 2.37 16 28 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.14 3.04 7.10 -2.91 -0.02 3.02 16 30 H 0.07 1.67 7.88 -2.39 -0.02 1.65 16 31 H 0.06 1.05 7.37 -2.39 -0.02 1.03 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 1.21 7.41 -2.39 -0.02 1.19 16 37 H 0.11 3.94 6.18 -2.92 -0.02 3.92 16 38 H 0.33 13.04 7.20 -89.70 -0.65 12.39 16 39 H 0.33 11.01 9.06 -89.69 -0.81 10.19 16 40 H 0.26 15.97 8.31 -92.70 -0.77 15.19 16 Total: -1.00 -68.46 311.47 3.76 -64.70 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.62 Total: 33.36 kcal Atomic # 6 Polarization: -52.93 SS G_CDS: 3.19 Total: -49.74 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -0.65 Total: -95.39 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.85 Total: 47.07 kcal Total: -68.46 3.76 -64.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.816 kcal (2) G-P(sol) polarization free energy of solvation -68.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds