Wall clock time and date at job start Mon Mar 30 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46974 * 2 1 4 4 C 1.53000 * 109.47284 * 64.99942 * 3 2 1 5 5 C 1.52996 * 109.46921 * 185.00307 * 4 3 2 6 6 C 1.50703 * 109.46997 * 185.00599 * 3 2 1 7 7 C 1.38258 * 119.99312 * 300.01413 * 6 3 2 8 8 C 1.38218 * 119.99503 * 180.02562 * 7 6 3 9 9 C 1.38258 * 120.00369 * 359.96229 * 8 7 6 10 10 C 1.38214 * 119.99597 * 359.78498 * 9 8 7 11 11 C 1.38209 * 120.00491 * 119.99942 * 6 3 2 12 12 C 1.50696 * 119.99783 * 359.97438 * 11 6 3 13 13 H 1.09006 * 109.47511 * 40.00028 * 12 11 6 14 14 N 1.46894 * 109.47259 * 160.00370 * 12 11 6 15 15 C 1.50706 * 109.47259 * 280.00023 * 12 11 6 16 16 H 1.08005 * 119.99758 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00102 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 1.08995 * 109.47432 * 60.00694 * 1 2 3 24 24 H 1.09008 * 109.47029 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47254 * 299.99724 * 1 2 3 26 26 H 1.08999 * 109.47507 * 239.99789 * 2 1 3 27 27 H 1.09001 * 109.47385 * 120.00016 * 2 1 3 28 28 H 1.09005 * 109.46641 * 304.99986 * 3 2 1 29 29 H 1.09001 * 109.46855 * 305.00378 * 4 3 2 30 30 H 1.08994 * 109.46827 * 65.00458 * 4 3 2 31 31 H 1.09001 * 109.47414 * 299.99728 * 5 4 3 32 32 H 1.08995 * 109.47412 * 59.99883 * 5 4 3 33 33 H 1.09005 * 109.47044 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.00719 * 359.97438 * 7 6 3 35 35 H 1.08005 * 120.00071 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.99800 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.99934 * 180.25978 * 10 9 8 38 38 H 1.00907 * 110.99654 * 296.04440 * 14 12 11 39 39 H 1.00901 * 111.00146 * 59.99612 * 14 12 11 40 40 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0352 3.6024 1.2557 6 6 3.5419 1.4443 -0.1240 7 6 4.3152 0.8163 0.8346 8 6 5.6928 0.8184 0.7212 9 6 6.2972 1.4478 -0.3511 10 6 5.5238 2.0711 -1.3121 11 6 4.1461 2.0735 -1.1960 12 6 3.3030 2.7572 -2.2413 13 1 2.4756 3.2768 -1.7580 14 7 4.1261 3.7257 -2.9777 15 6 2.7592 1.7290 -3.1996 16 1 2.9998 0.6847 -3.0648 17 6 1.9547 2.1213 -4.2482 18 7 1.6622 3.3930 -4.4126 19 14 1.2814 0.8468 -5.4364 20 1 0.4505 1.5206 -6.4664 21 1 2.4089 0.1391 -6.0945 22 1 0.4489 -0.1324 -4.6924 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6052 1.9815 -0.8419 29 1 0.5562 2.0470 1.4401 30 1 2.1408 1.6421 2.1425 31 1 3.1142 3.6821 1.1230 32 1 1.5297 4.0870 0.4205 33 1 1.7472 4.0897 2.1873 34 1 3.8432 0.3248 1.6725 35 1 6.2970 0.3282 1.4703 36 1 7.3736 1.4490 -0.4398 37 1 5.9957 2.5592 -2.1520 38 1 4.4498 4.4622 -2.3685 39 1 4.9005 3.2683 -3.4350 40 1 2.0122 4.0548 -3.7959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260268489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:16 Heat of formation + Delta-G solvation = -3.085870 kcal Electronic energy + Delta-G solvation = -18927.900746 eV Core-core repulsion = 16320.201497 eV Total energy + Delta-G solvation = -2607.699249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.47944 -36.00845 -34.86683 -31.53960 -31.33651 -30.22748 -29.15174 -25.89337 -25.52950 -22.88445 -22.42335 -21.69573 -19.99851 -19.06838 -16.83324 -16.23980 -15.03483 -14.74359 -14.33918 -13.93299 -13.89708 -13.64470 -13.61732 -13.18744 -13.03157 -12.22661 -12.10311 -11.88870 -11.69438 -11.65217 -11.30389 -11.15024 -10.81038 -10.69133 -10.57543 -10.43280 -10.16458 -10.05011 -9.78285 -9.59976 -8.87793 -8.32520 -8.17683 -7.71862 -7.46799 -6.14415 -3.97538 1.96290 2.05727 3.48488 3.49802 3.68159 4.37038 4.63683 5.18286 5.18920 5.44033 5.45213 5.48845 5.52197 5.60762 5.65264 5.69907 5.83649 5.93907 6.03274 6.10031 6.14575 6.18886 6.21833 6.28195 6.39362 6.41417 6.53498 6.58591 6.66233 6.72489 6.80610 6.92614 7.00176 7.03418 7.23827 7.47818 7.64950 8.02602 8.34146 8.69152 8.78173 9.08500 9.84952 11.24634 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.009924 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.480901 B = 2820.677758 C = 3474.862220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.053 4.053 4 C -0.114 4.114 5 C -0.150 4.150 6 C -0.064 4.064 7 C -0.120 4.120 8 C -0.147 4.147 9 C -0.128 4.128 10 C -0.134 4.134 11 C -0.064 4.064 12 C 0.238 3.762 13 H 0.043 0.957 14 N -0.832 5.832 15 C -0.599 4.599 16 H 0.044 0.956 17 C 0.040 3.960 18 N -0.891 5.891 19 Si 1.058 2.942 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.289 1.289 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.301 0.699 39 H 0.326 0.674 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 -3.549 10.737 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.071 4.071 4 C -0.152 4.152 5 C -0.207 4.207 6 C -0.065 4.065 7 C -0.138 4.138 8 C -0.165 4.165 9 C -0.146 4.146 10 C -0.153 4.153 11 C -0.066 4.066 12 C 0.129 3.871 13 H 0.061 0.939 14 N -0.360 5.360 15 C -0.638 4.638 16 H 0.063 0.937 17 C -0.170 4.170 18 N -0.526 5.526 19 Si 0.888 3.112 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.216 1.216 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.979 -3.564 8.938 9.672 hybrid contribution 2.034 -0.305 2.014 2.878 sum 3.013 -3.869 10.952 12.000 Atomic orbital electron populations 1.21817 0.96256 1.00868 1.01937 1.21442 0.95364 0.96238 1.01388 1.20313 0.91428 0.96575 0.98831 1.21636 1.00546 0.95719 0.97268 1.21752 1.01712 0.96357 1.00867 1.19628 0.95254 0.97440 0.94131 1.20888 0.93552 1.00397 0.99000 1.20855 0.94718 1.02122 0.98830 1.20944 0.98829 0.99491 0.95383 1.20964 0.93987 1.01428 0.98889 1.21368 0.94191 0.95722 0.95307 1.18381 0.89948 0.90000 0.88756 0.93933 1.59449 1.26751 1.15024 1.34812 1.21592 1.35065 0.92550 1.14610 0.93730 1.25531 0.94400 0.99636 0.97433 1.70554 1.42064 1.01397 1.38555 0.83723 0.76313 0.74859 0.76352 1.20965 1.21744 1.21605 0.92068 0.93460 0.93091 0.91536 0.93200 0.87791 0.91956 0.92793 0.92851 0.92523 0.93634 0.87255 0.87408 0.87389 0.86978 0.88843 0.86075 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.67 37.16 0.36 -1.90 16 2 C -0.11 -1.77 5.14 -26.73 -0.14 -1.91 16 3 C -0.05 -0.95 1.72 -91.77 -0.16 -1.11 16 4 C -0.11 -1.73 5.16 -26.73 -0.14 -1.87 16 5 C -0.15 -2.29 9.73 37.16 0.36 -1.93 16 6 C -0.06 -1.21 3.75 -104.62 -0.39 -1.60 16 7 C -0.12 -2.03 8.71 -39.58 -0.34 -2.37 16 8 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 9 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 10 C -0.13 -2.56 9.25 -39.58 -0.37 -2.93 16 11 C -0.06 -1.32 5.01 -104.63 -0.52 -1.85 16 12 C 0.24 5.63 1.78 -70.02 -0.12 5.50 16 13 H 0.04 1.09 6.56 -51.93 -0.34 0.75 16 14 N -0.83 -18.76 7.27 -6.65 -0.05 -18.81 16 15 C -0.60 -16.06 8.08 -34.44 -0.28 -16.33 16 16 H 0.04 1.24 7.74 -52.48 -0.41 0.83 16 17 C 0.04 1.11 5.39 -17.82 -0.10 1.01 16 18 N -0.89 -26.30 13.51 55.43 0.75 -25.55 16 19 Si 1.06 25.08 29.90 -169.99 -5.08 20.00 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.05 0.68 6.46 -51.93 -0.34 0.34 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.74 7.57 -51.93 -0.39 0.34 16 28 H 0.10 2.23 5.31 -51.93 -0.28 1.95 16 29 H 0.06 0.87 6.34 -51.93 -0.33 0.54 16 30 H 0.05 0.76 7.23 -51.93 -0.38 0.38 16 31 H 0.05 0.87 7.38 -51.93 -0.38 0.49 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 1.62 7.13 -52.49 -0.37 1.24 16 35 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 2.05 6.25 -52.49 -0.33 1.72 16 38 H 0.30 6.04 9.06 -39.29 -0.36 5.69 16 39 H 0.33 7.17 7.28 -39.29 -0.29 6.89 16 40 H 0.29 8.54 6.39 -40.82 -0.26 8.28 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -28.76 313.02 -8.50 -37.26 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -6.20 Total: 14.99 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: -2.63 Total: -32.60 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.70 Total: -44.37 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.76 -8.50 -37.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260268489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.171 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds