Wall clock time and date at job start Mon Mar 30 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46974 * 2 1 4 4 C 1.53000 * 109.47284 * 64.99942 * 3 2 1 5 5 C 1.52996 * 109.46921 * 185.00307 * 4 3 2 6 6 C 1.50703 * 109.46997 * 185.00599 * 3 2 1 7 7 C 1.38258 * 119.99312 * 300.01413 * 6 3 2 8 8 C 1.38218 * 119.99503 * 180.02562 * 7 6 3 9 9 C 1.38258 * 120.00369 * 359.96229 * 8 7 6 10 10 C 1.38214 * 119.99597 * 359.78498 * 9 8 7 11 11 C 1.38209 * 120.00491 * 119.99942 * 6 3 2 12 12 C 1.50696 * 119.99783 * 359.97438 * 11 6 3 13 13 H 1.09006 * 109.47511 * 40.00028 * 12 11 6 14 14 N 1.46894 * 109.47259 * 160.00370 * 12 11 6 15 15 C 1.50706 * 109.47259 * 280.00023 * 12 11 6 16 16 H 1.08005 * 119.99758 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00102 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 1.08995 * 109.47432 * 60.00694 * 1 2 3 24 24 H 1.09008 * 109.47029 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47254 * 299.99724 * 1 2 3 26 26 H 1.08999 * 109.47507 * 239.99789 * 2 1 3 27 27 H 1.09001 * 109.47385 * 120.00016 * 2 1 3 28 28 H 1.09005 * 109.46641 * 304.99986 * 3 2 1 29 29 H 1.09001 * 109.46855 * 305.00378 * 4 3 2 30 30 H 1.08994 * 109.46827 * 65.00458 * 4 3 2 31 31 H 1.09001 * 109.47414 * 299.99728 * 5 4 3 32 32 H 1.08995 * 109.47412 * 59.99883 * 5 4 3 33 33 H 1.09005 * 109.47044 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.00719 * 359.97438 * 7 6 3 35 35 H 1.08005 * 120.00071 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.99800 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.99934 * 180.25978 * 10 9 8 38 38 H 1.00907 * 110.99654 * 296.04440 * 14 12 11 39 39 H 1.00901 * 111.00146 * 59.99612 * 14 12 11 40 40 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0352 3.6024 1.2557 6 6 3.5419 1.4443 -0.1240 7 6 4.3152 0.8163 0.8346 8 6 5.6928 0.8184 0.7212 9 6 6.2972 1.4478 -0.3511 10 6 5.5238 2.0711 -1.3121 11 6 4.1461 2.0735 -1.1960 12 6 3.3030 2.7572 -2.2413 13 1 2.4756 3.2768 -1.7580 14 7 4.1261 3.7257 -2.9777 15 6 2.7592 1.7290 -3.1996 16 1 2.9998 0.6847 -3.0648 17 6 1.9547 2.1213 -4.2482 18 7 1.6622 3.3930 -4.4126 19 14 1.2814 0.8468 -5.4364 20 1 0.4505 1.5206 -6.4664 21 1 2.4089 0.1391 -6.0945 22 1 0.4489 -0.1324 -4.6924 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6052 1.9815 -0.8419 29 1 0.5562 2.0470 1.4401 30 1 2.1408 1.6421 2.1425 31 1 3.1142 3.6821 1.1230 32 1 1.5297 4.0870 0.4205 33 1 1.7472 4.0897 2.1873 34 1 3.8432 0.3248 1.6725 35 1 6.2970 0.3282 1.4703 36 1 7.3736 1.4490 -0.4398 37 1 5.9957 2.5592 -2.1520 38 1 4.4498 4.4622 -2.3685 39 1 4.9005 3.2683 -3.4350 40 1 2.0122 4.0548 -3.7959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260268489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:15 Heat of formation + Delta-G solvation = -19.009255 kcal Electronic energy + Delta-G solvation = -18928.591236 eV Core-core repulsion = 16320.201497 eV Total energy + Delta-G solvation = -2608.389739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91013 -37.36174 -36.65945 -33.50868 -32.60549 -31.58020 -30.71111 -27.66239 -27.03590 -24.65418 -23.70004 -23.09682 -21.60900 -20.43277 -18.83557 -17.68436 -16.60958 -16.32611 -15.87805 -15.57148 -15.28728 -15.20578 -14.96294 -14.78556 -14.35704 -13.84876 -13.83329 -13.25977 -13.19064 -12.90915 -12.72904 -12.65015 -12.56492 -12.26127 -12.01813 -11.90148 -11.86531 -11.47179 -11.12223 -11.09953 -10.82324 -10.45870 -9.58474 -9.35507 -9.19067 -8.32582 -6.17810 0.58875 0.65015 1.52861 1.59548 1.78344 2.62276 3.00104 3.34874 3.84747 3.89138 4.16615 4.18009 4.21081 4.25759 4.30199 4.36680 4.43772 4.58349 4.62153 4.68661 4.81115 4.89700 4.93160 5.03863 5.08610 5.12134 5.13485 5.27928 5.29444 5.34051 5.42054 5.50887 5.53725 5.68375 5.74960 5.93253 6.04081 6.26495 6.32240 6.73485 6.80767 7.05808 7.70964 9.02495 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.009924 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.480901 B = 2820.677758 C = 3474.862220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.051 4.051 4 C -0.107 4.107 5 C -0.145 4.145 6 C -0.074 4.074 7 C -0.122 4.122 8 C -0.137 4.137 9 C -0.130 4.130 10 C -0.148 4.148 11 C -0.098 4.098 12 C 0.248 3.752 13 H 0.013 0.987 14 N -0.840 5.840 15 C -0.595 4.595 16 H 0.028 0.972 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 1.098 2.902 20 H -0.286 1.286 21 H -0.279 1.279 22 H -0.275 1.275 23 H 0.033 0.967 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.315 0.685 39 H 0.328 0.672 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 -5.302 13.124 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.070 4.070 4 C -0.145 4.145 5 C -0.203 4.203 6 C -0.074 4.074 7 C -0.140 4.140 8 C -0.155 4.155 9 C -0.148 4.148 10 C -0.167 4.167 11 C -0.100 4.100 12 C 0.139 3.861 13 H 0.031 0.969 14 N -0.369 5.369 15 C -0.634 4.634 16 H 0.046 0.954 17 C -0.211 4.211 18 N -0.557 5.557 19 Si 0.923 3.077 20 H -0.212 1.212 21 H -0.205 1.205 22 H -0.200 1.200 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.910 -5.321 11.338 12.670 hybrid contribution 1.823 0.235 1.361 2.287 sum 3.732 -5.086 12.699 14.180 Atomic orbital electron populations 1.21790 0.95114 1.01997 1.01615 1.21413 0.96400 0.95177 1.01087 1.20217 0.91030 0.97090 0.98639 1.21605 1.01555 0.95096 0.96202 1.21704 1.00433 0.96934 1.01183 1.19800 0.95884 0.97495 0.94267 1.21187 0.94072 0.99735 0.98964 1.21329 0.94733 1.00558 0.98830 1.21282 1.00242 0.98507 0.94726 1.21079 0.93492 1.02222 0.99872 1.21128 0.94821 0.98029 0.96004 1.17973 0.89854 0.89351 0.88902 0.96942 1.59243 1.26831 1.15400 1.35436 1.21783 1.34425 0.92443 1.14774 0.95372 1.26730 0.94751 1.00418 0.99199 1.70663 1.43784 1.02030 1.39221 0.83185 0.76324 0.73362 0.74849 1.21196 1.20517 1.20042 0.94822 0.91593 0.90971 0.94653 0.90455 0.92551 0.90706 0.90485 0.94291 0.94999 0.90947 0.84475 0.83576 0.84421 0.87223 0.87382 0.85841 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.67 71.98 0.70 -3.57 16 2 C -0.10 -3.33 5.14 30.59 0.16 -3.17 16 3 C -0.05 -1.84 1.72 -11.54 -0.02 -1.86 16 4 C -0.11 -3.07 5.16 30.59 0.16 -2.91 16 5 C -0.15 -4.39 9.73 71.98 0.70 -3.69 16 6 C -0.07 -2.75 3.75 -19.87 -0.07 -2.83 16 7 C -0.12 -3.72 8.71 22.27 0.19 -3.52 16 8 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 9 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 10 C -0.15 -5.59 9.25 22.27 0.21 -5.39 16 11 C -0.10 -4.14 5.01 -19.87 -0.10 -4.24 16 12 C 0.25 12.34 1.78 43.42 0.08 12.42 16 13 H 0.01 0.71 6.56 -2.38 -0.02 0.70 16 14 N -0.84 -39.59 7.27 -174.95 -1.27 -40.86 16 15 C -0.60 -33.26 8.08 25.60 0.21 -33.05 16 16 H 0.03 1.62 7.74 -2.91 -0.02 1.60 16 17 C -0.01 -0.42 5.39 84.65 0.46 0.04 16 18 N -0.92 -56.55 13.51 21.45 0.29 -56.26 16 19 Si 1.10 51.70 29.90 68.60 2.05 53.75 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.07 1.75 6.46 -2.39 -0.02 1.74 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 2.05 7.57 -2.39 -0.02 2.03 16 28 H 0.06 2.56 5.31 -2.38 -0.01 2.55 16 29 H 0.07 1.94 6.34 -2.39 -0.02 1.93 16 30 H 0.08 1.87 7.23 -2.39 -0.02 1.85 16 31 H 0.04 1.27 7.38 -2.39 -0.02 1.25 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.14 3.39 7.13 -2.91 -0.02 3.37 16 35 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.11 4.05 6.25 -2.91 -0.02 4.03 16 38 H 0.31 13.21 9.06 -89.69 -0.81 12.40 16 39 H 0.33 14.99 7.28 -89.69 -0.65 14.34 16 40 H 0.28 17.25 6.39 -92.71 -0.59 16.66 16 Total: -1.00 -64.87 313.02 3.92 -60.95 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.25 Total: 41.57 kcal Atomic # 6 Polarization: -62.25 SS G_CDS: 3.11 Total: -59.15 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -0.98 Total: -97.12 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.75 kcal Total: -64.87 3.92 -60.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260268489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.940 kcal (2) G-P(sol) polarization free energy of solvation -64.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds