Wall clock time and date at job start Mon Mar 30 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46989 * 2 1 4 4 C 1.53007 * 109.47277 * 185.59747 * 3 2 1 5 5 C 1.53005 * 109.46656 * 65.35474 * 4 3 2 6 6 C 1.50706 * 109.47036 * 65.60237 * 3 2 1 7 7 C 1.38263 * 119.99753 * 59.72647 * 6 3 2 8 8 C 1.38211 * 119.99618 * 179.78692 * 7 6 3 9 9 C 1.38262 * 120.00253 * 0.44543 * 8 7 6 10 10 C 1.38219 * 119.99730 * 359.80364 * 9 8 7 11 11 C 1.38204 * 120.00062 * 239.99712 * 6 3 2 12 12 C 1.50706 * 120.00217 * 359.97438 * 11 6 3 13 13 H 1.09000 * 109.46671 * 324.99629 * 12 11 6 14 14 N 1.46895 * 109.47282 * 204.99716 * 12 11 6 15 15 C 1.50697 * 109.47044 * 84.99371 * 12 11 6 16 16 H 1.08001 * 120.00406 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99772 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00003 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99749 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47250 * 60.00314 * 19 17 15 21 21 H 1.48501 * 109.46973 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47085 * 299.99860 * 19 17 15 23 23 H 1.09002 * 109.47214 * 64.09986 * 1 2 3 24 24 H 1.08998 * 109.47056 * 184.09316 * 1 2 3 25 25 H 1.09004 * 109.47522 * 304.09868 * 1 2 3 26 26 H 1.08999 * 109.47460 * 239.99903 * 2 1 3 27 27 H 1.08998 * 109.46890 * 119.99837 * 2 1 3 28 28 H 1.08998 * 109.47440 * 305.60061 * 3 2 1 29 29 H 1.08999 * 109.47090 * 185.35293 * 4 3 2 30 30 H 1.08996 * 109.47017 * 305.36021 * 4 3 2 31 31 H 1.08999 * 109.47249 * 293.80930 * 5 4 3 32 32 H 1.09008 * 109.46732 * 53.80734 * 5 4 3 33 33 H 1.09000 * 109.47101 * 173.80664 * 5 4 3 34 34 H 1.07995 * 120.00334 * 359.97438 * 7 6 3 35 35 H 1.08002 * 120.00044 * 180.27170 * 8 7 6 36 36 H 1.07994 * 120.00123 * 179.83344 * 9 8 7 37 37 H 1.07997 * 119.99569 * 180.02562 * 10 9 8 38 38 H 1.00900 * 110.99916 * 176.04376 * 14 12 11 39 39 H 1.00898 * 111.00020 * 300.00105 * 14 12 11 40 40 H 0.96998 * 119.99903 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5635 1.4449 -0.1407 5 6 3.9498 0.8871 -1.5121 6 6 1.6540 2.1117 1.2940 7 6 2.0968 1.5959 2.4979 8 6 1.7465 2.2122 3.6844 9 6 0.9457 3.3392 3.6679 10 6 0.4988 3.8518 2.4646 11 6 0.8528 3.2378 1.2775 12 6 0.3656 3.7968 -0.0345 13 1 1.1343 3.6608 -0.7952 14 7 0.0777 5.2289 0.1202 15 6 -0.8890 3.0746 -0.4533 16 1 -1.2934 2.2895 0.1685 17 6 -1.5206 3.4160 -1.6304 18 7 -1.0280 4.3715 -2.3878 19 14 -3.0762 2.5212 -2.1492 20 1 -4.1234 2.7075 -1.1130 21 1 -3.5555 3.0711 -3.4426 22 1 -2.7858 1.0732 -2.3047 23 1 -0.3634 0.4489 -0.9245 24 1 -0.3633 -1.0250 0.0734 25 1 -0.3634 0.5761 0.8510 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.5970 1.9845 -0.8356 29 1 3.9356 2.4650 -0.0454 30 1 4.0015 0.8238 0.6406 31 1 3.6752 -0.1664 -1.5663 32 1 3.4240 1.4401 -2.2905 33 1 5.0253 0.9901 -1.6564 34 1 2.7189 0.7132 2.5111 35 1 2.0960 1.8119 4.6246 36 1 0.6698 3.8192 4.5951 37 1 -0.1264 4.7323 2.4517 38 1 -0.1891 5.6414 -0.7612 39 1 -0.6324 5.3815 0.8205 40 1 -1.4721 4.6114 -3.2161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260268498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:18 Heat of formation + Delta-G solvation = -17.914917 kcal Electronic energy + Delta-G solvation = -18940.000256 eV Core-core repulsion = 16331.657971 eV Total energy + Delta-G solvation = -2608.342285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73867 -37.21122 -36.47598 -33.48668 -32.54363 -31.40840 -30.65350 -28.01170 -26.91780 -24.70983 -23.60072 -23.05404 -21.25244 -20.32871 -18.50979 -17.75198 -16.61835 -16.27208 -15.84912 -15.46036 -15.24523 -15.01798 -14.73084 -14.68779 -14.13814 -13.76293 -13.37303 -13.24122 -13.14087 -12.90931 -12.76612 -12.66693 -12.53931 -12.46845 -12.10100 -11.85293 -11.75603 -11.56626 -11.37334 -11.01965 -10.89218 -10.59110 -9.42116 -9.30966 -9.03394 -8.04948 -6.26485 0.74062 0.81228 1.35894 1.37897 1.44199 2.38424 3.12455 3.16101 3.94145 3.97232 4.26620 4.33285 4.35706 4.38880 4.48294 4.51351 4.58236 4.68758 4.80558 4.85004 4.95053 5.02129 5.03515 5.11508 5.19776 5.25444 5.29010 5.34964 5.46598 5.48141 5.57078 5.61093 5.68321 5.74393 5.83132 5.90102 6.11342 6.28035 6.43558 6.73979 7.00220 7.14756 7.46288 8.89119 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.009887 C = 0.008098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.708168 B = 2831.225053 C = 3456.947397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.052 4.052 4 C -0.107 4.107 5 C -0.148 4.148 6 C -0.081 4.081 7 C -0.122 4.122 8 C -0.139 4.139 9 C -0.135 4.135 10 C -0.132 4.132 11 C -0.060 4.060 12 C 0.248 3.752 13 H 0.015 0.985 14 N -0.848 5.848 15 C -0.528 4.528 16 H 0.051 0.949 17 C 0.024 3.976 18 N -0.919 5.919 19 Si 0.940 3.060 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.271 1.271 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.344 0.656 39 H 0.316 0.684 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.495 -7.585 7.325 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C -0.070 4.070 4 C -0.145 4.145 5 C -0.205 4.205 6 C -0.081 4.081 7 C -0.140 4.140 8 C -0.157 4.157 9 C -0.152 4.152 10 C -0.150 4.150 11 C -0.061 4.061 12 C 0.138 3.862 13 H 0.033 0.967 14 N -0.377 5.377 15 C -0.567 4.567 16 H 0.070 0.930 17 C -0.175 4.175 18 N -0.560 5.560 19 Si 0.766 3.234 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.196 1.196 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.243 -7.420 7.360 12.715 hybrid contribution -2.214 -0.121 -1.099 2.475 sum 5.029 -7.541 6.260 11.016 Atomic orbital electron populations 1.21749 0.96949 1.00132 1.01118 1.21498 0.95036 0.94886 1.02241 1.20241 0.95872 0.96214 0.94721 1.21505 0.93915 1.00572 0.98500 1.21794 1.01317 1.01314 0.96123 1.19763 0.97529 0.95196 0.95648 1.21104 1.00880 1.00473 0.91573 1.21280 0.99451 0.96426 0.98538 1.21299 0.99068 0.97449 0.97432 1.21041 1.01171 1.00210 0.92571 1.20228 0.95160 0.94851 0.95839 1.17779 0.93591 0.85685 0.89150 0.96710 1.59555 1.48777 1.15816 1.13577 1.21907 1.09863 1.19289 1.05682 0.93034 1.25580 0.99760 0.95845 0.96304 1.69834 1.41045 1.30986 1.14085 0.85892 0.80737 0.79433 0.77291 1.20212 1.21243 1.19643 0.94577 0.92474 0.94300 0.91085 0.90782 0.92436 0.93852 0.90290 0.91412 0.94573 0.91455 0.84563 0.83819 0.84668 0.87161 0.84210 0.87416 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.81 71.98 0.63 -4.51 16 2 C -0.10 -3.09 5.18 30.59 0.16 -2.93 16 3 C -0.05 -1.86 1.81 -11.54 -0.02 -1.88 16 4 C -0.11 -3.18 5.14 30.60 0.16 -3.02 16 5 C -0.15 -3.90 9.53 71.98 0.69 -3.22 16 6 C -0.08 -3.05 3.73 -19.86 -0.07 -3.13 16 7 C -0.12 -3.82 8.70 22.27 0.19 -3.62 16 8 C -0.14 -4.04 10.05 22.27 0.22 -3.81 16 9 C -0.13 -4.33 10.05 22.27 0.22 -4.10 16 10 C -0.13 -5.21 9.27 22.27 0.21 -5.00 16 11 C -0.06 -2.62 4.99 -19.87 -0.10 -2.72 16 12 C 0.25 12.42 2.26 43.42 0.10 12.52 16 13 H 0.02 0.86 6.39 -2.39 -0.02 0.84 16 14 N -0.85 -41.65 8.79 -174.96 -1.54 -43.18 16 15 C -0.53 -27.71 7.44 25.60 0.19 -27.52 16 16 H 0.05 2.75 6.10 -2.91 -0.02 2.73 16 17 C 0.02 1.31 5.38 84.66 0.46 1.76 16 18 N -0.92 -51.03 11.54 21.45 0.25 -50.78 16 19 Si 0.94 43.08 29.54 68.60 2.03 45.10 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H 0.04 1.50 7.47 -2.39 -0.02 1.48 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.04 1.54 6.31 -2.38 -0.02 1.53 16 26 H 0.07 2.00 6.47 -2.39 -0.02 1.98 16 27 H 0.07 1.96 7.19 -2.39 -0.02 1.94 16 28 H 0.06 2.58 5.41 -2.39 -0.01 2.57 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.95 7.60 -2.39 -0.02 1.93 16 31 H 0.07 1.57 6.76 -2.39 -0.02 1.56 16 32 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.14 3.43 7.14 -2.91 -0.02 3.41 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 37 H 0.11 4.38 6.29 -2.91 -0.02 4.36 16 38 H 0.34 18.09 7.08 -89.69 -0.64 17.46 16 39 H 0.32 14.72 7.20 -89.70 -0.65 14.08 16 40 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -57.77 307.92 3.53 -54.24 By element: Atomic # 1 Polarization: 46.05 SS G_CDS: -0.24 Total: 45.81 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 3.03 Total: -51.19 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -1.29 Total: -93.96 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -57.77 3.53 -54.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260268498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.323 kcal (2) G-P(sol) polarization free energy of solvation -57.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds